Metagenome / Metatranscriptome Family F105126

Select file to download:
Download

Basic Information
Family ID	F105126
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	44 residues
Representative Sequence	MALISQPGSDYQIASISLDAGYTRDLILMLIDVHAVLDHLYLDG
Number of Associated Samples	96
Number of Associated Scaffolds	100

Basic Information

Family ID

F105126

Family Type

Metagenome / Metatranscriptome

Number of Sequences

100

Average Sequence Length

44 residues

Representative Sequence

MALISQPGSDYQIASISLDAGYTRDLILMLIDVHAVLDHLYLDG

Number of Associated Samples

Number of Associated Scaffolds

100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	2.00 %
% of genes from short scaffolds (< 2000 bps)	1.00 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	No

Quality Assessment

Transcriptomic Evidence

Yes

Most common taxonomic group

Unclassified

% of genes with valid RBS motifs

100.00 %

% of genes near scaffold ends (potentially truncated)

2.00 %

% of genes from short scaffolds (< 2000 bps)

1.00 %

Associated GOLD sequencing projects

AlphaFold2 3D model prediction

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Hidden Markov Model

Powered by Skylign

Most Common Taxonomy
Group	Unclassified (99.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Taxonomy

Group

Unclassified (99.000 % of family members)

NCBI Taxonomy ID

N/A

Taxonomy

N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.000 % of family members)
Environment Ontology (ENVO)	Unclassified (29.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.000 % of family members)

Most Common Ecosystem

GOLD Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(28.000 % of family members)

Environment Ontology (ENVO)

Unclassified
(29.000 % of family members)

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)
(45.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1NODE_04134952 2JGI12627J18819_101938862 3Ga0062386_1009535572 4Ga0066676_111065261 5Ga0070714_1002609471 6Ga0070710_100945983 7Ga0070711_1005619652 8Ga0070708_1003104443 9Ga0070698_1009197771 10Ga0070730_105842711 11Ga0066700_102236311 12Ga0066903_1075766872 13Ga0070766_100827103 14Ga0075019_111517422 15Ga0075030_1015549052 16Ga0074047_120173012 17Ga0066665_115131462 18Ga0116214_13000571 19Ga0116222_10462641 20Ga0116225_10546203 21Ga0116225_14188721 22Ga0105237_124034882 23Ga0116215_11971631 24Ga0126373_120596652 25Ga0126379_131250722 26Ga0105239_133102002 27Ga0126381_1019220822 28Ga0136449_1018158682 29Ga0126361_100321541 30Ga0137776_16815362 31Ga0151490_15838662 32Ga0137380_101278545 33Ga0137370_101620681 34Ga0126369_135683242 35Ga0134085_105620752 36Ga0132257_1022205781 37Ga0182033_121695702 38Ga0182035_105533113 39Ga0182038_101419791 40Ga0187812_12708172 41Ga0187806_10030171 42Ga0187806_12754811 43Ga0187814_103365612 44Ga0187814_104394222 45Ga0187775_100699731 46Ga0187808_102412072 47Ga0187781_104184551 48Ga0187780_109434803 49Ga0187816_104776412 50Ga0187772_109413811 51Ga0187770_103029692 52Ga0210384_102998591 53Ga0210402_100806743 54Ga0247693_10089103 55Ga0224564_10024851 56Ga0207667_121175872 57Ga0209240_10180694 58Ga0207745_10124341 59Ga0207743_10175701 60Ga0208730_10092251 61Ga0208043_10201864 62Ga0209525_10058173 63Ga0209275_102621982 64Ga0222749_105640831 65Ga0265723_10321781 66Ga0318541_105177691 67Ga0318538_103737802 68Ga0318538_106006912 69Ga0318515_104036161 70Ga0318555_104595061 71Ga0318574_104468141 72Ga0318560_100180803 73Ga0310686_1144191132 74Ga0318502_110179311 75Ga0318492_100573361 76Ga0318494_107994241 77Ga0318535_103603562 78Ga0318552_103893392 79Ga0318529_102016781 80Ga0318497_104530231 81Ga0307478_113733321 82Ga0318499_101129131 83Ga0306919_114654851 84Ga0318551_102334801 85Ga0306923_107974273 86Ga0318562_101998971 87Ga0318563_103812281 88Ga0318569_104070471 89Ga0318575_104650382 90Ga0318505_101906202 91Ga0318513_101553281 92Ga0318525_102362911 93Ga0335082_112130901 94Ga0335078_124302741 95Ga0335080_116266172 96Ga0335070_100564144 97Ga0335081_100824485 98Ga0335075_107520511 99Ga0335077_103507403 100Ga0310914_107458981
Powered by MSAViewer

Full Alignment

Alignment of all the sequences in the family.

IDLabel

.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68

1NODE_04134952

2JGI12627J18819_101938862

3Ga0062386_1009535572

4Ga0066676_111065261

5Ga0070714_1002609471

6Ga0070710_100945983

7Ga0070711_1005619652

8Ga0070708_1003104443

9Ga0070698_1009197771

10Ga0070730_105842711

11Ga0066700_102236311

12Ga0066903_1075766872

13Ga0070766_100827103

14Ga0075019_111517422

15Ga0075030_1015549052

16Ga0074047_120173012

17Ga0066665_115131462

18Ga0116214_13000571

19Ga0116222_10462641

20Ga0116225_10546203

21Ga0116225_14188721

22Ga0105237_124034882

23Ga0116215_11971631

24Ga0126373_120596652

25Ga0126379_131250722

26Ga0105239_133102002

27Ga0126381_1019220822

28Ga0136449_1018158682

29Ga0126361_100321541

30Ga0137776_16815362

31Ga0151490_15838662

32Ga0137380_101278545

33Ga0137370_101620681

34Ga0126369_135683242

35Ga0134085_105620752

36Ga0132257_1022205781

37Ga0182033_121695702

38Ga0182035_105533113

39Ga0182038_101419791

40Ga0187812_12708172

41Ga0187806_10030171

42Ga0187806_12754811

43Ga0187814_103365612

44Ga0187814_104394222

45Ga0187775_100699731

46Ga0187808_102412072

47Ga0187781_104184551

48Ga0187780_109434803

49Ga0187816_104776412

50Ga0187772_109413811

51Ga0187770_103029692

52Ga0210384_102998591

53Ga0210402_100806743

54Ga0247693_10089103

55Ga0224564_10024851

56Ga0207667_121175872

57Ga0209240_10180694

58Ga0207745_10124341

59Ga0207743_10175701

60Ga0208730_10092251

61Ga0208043_10201864

62Ga0209525_10058173

63Ga0209275_102621982

64Ga0222749_105640831

65Ga0265723_10321781

66Ga0318541_105177691

67Ga0318538_103737802

68Ga0318538_106006912

69Ga0318515_104036161

70Ga0318555_104595061

71Ga0318574_104468141

72Ga0318560_100180803

73Ga0310686_1144191132

74Ga0318502_110179311

75Ga0318492_100573361

76Ga0318494_107994241

77Ga0318535_103603562

78Ga0318552_103893392

79Ga0318529_102016781

80Ga0318497_104530231

81Ga0307478_113733321

82Ga0318499_101129131

83Ga0306919_114654851

84Ga0318551_102334801

85Ga0306923_107974273

86Ga0318562_101998971

87Ga0318563_103812281

88Ga0318569_104070471

89Ga0318575_104650382

90Ga0318505_101906202

91Ga0318513_101553281

92Ga0318525_102362911

93Ga0335082_112130901

94Ga0335078_124302741

95Ga0335080_116266172

96Ga0335070_100564144

97Ga0335081_100824485

98Ga0335075_107520511

99Ga0335077_103507403

100Ga0310914_107458981

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1NODE_04134952 2Ga0062386_1009535572 3Ga0066665_115131462 4Ga0207667_121175872
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1NODE_04134952 2Ga0062386_1009535572 3Ga0066665_115131462 4Ga0207667_121175872
Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.91% β-sheet: 11.36% Coil/Unstructured: 47.73%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Predicted Topology & Secondary Structure

Classification:

Globular

Signal Peptide:

Secondary Structure distribution:

α-helix: 40.91% β-sheet: 11.36% Coil/Unstructured: 47.73%

Feature Viewer

Position :

Zoom :

x 1

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF01695	IstB_IS21	63.00
PF02371	Transposase_20	7.00
PF14690	zf-ISL3	2.00
PF00665	rve	2.00
PF01548	DEDD_Tnp_IS110	1.00
PF13683	rve_3	1.00
PF13495	Phage_int_SAM_4	1.00
PF13443	HTH_26	1.00
PF01243	Putative_PNPOx	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	63.00
COG3547	Transposase	Mobilome: prophages, transposons [X]	8.00
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	2.00
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	2.00
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	2.00
COG4584	Transposase	Mobilome: prophages, transposons [X]	2.00

COG ID

Name

Functional Category

% Frequency in 100 Family Scaffolds

COG1484

DNA replication protein DnaC

Replication, recombination and repair [L]

63.00

COG3547

Transposase