NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105061

Metagenome / Metatranscriptome Family F105061

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105061
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 59 residues
Representative Sequence MQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Number of Associated Samples 85
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 68.00 %
% of genes near scaffold ends (potentially truncated) 31.00 %
% of genes from short scaffolds (< 2000 bps) 87.00 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(35.000 % of family members)
Environment Ontology (ENVO) Unclassified
(61.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.45%    β-sheet: 0.00%    Coil/Unstructured: 46.55%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF03592Terminase_2 3.00
PF01541GIY-YIG 3.00
PF01612DNA_pol_A_exo1 1.00
PF04448DUF551 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 3.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.00 %
All OrganismsrootAll Organisms20.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10234237Not Available545Open in IMG/M
3300004097|Ga0055584_102534451Not Available517Open in IMG/M
3300005747|Ga0076924_1214039Not Available657Open in IMG/M
3300006025|Ga0075474_10112823Not Available872Open in IMG/M
3300006025|Ga0075474_10116526Not Available855Open in IMG/M
3300006026|Ga0075478_10142129Not Available751Open in IMG/M
3300006637|Ga0075461_10235332Not Available540Open in IMG/M
3300006802|Ga0070749_10393912Not Available765Open in IMG/M
3300006803|Ga0075467_10152714Not Available1324Open in IMG/M
3300006803|Ga0075467_10234924All Organisms → Viruses → Predicted Viral1002Open in IMG/M
3300006810|Ga0070754_10269583Not Available772Open in IMG/M
3300006810|Ga0070754_10344744Not Available660Open in IMG/M
3300006870|Ga0075479_10143527Not Available976Open in IMG/M
3300006874|Ga0075475_10195590Not Available868Open in IMG/M
3300006916|Ga0070750_10429671Not Available548Open in IMG/M
3300006920|Ga0070748_1093105All Organisms → Viruses → Predicted Viral1153Open in IMG/M
3300007229|Ga0075468_10234093Not Available525Open in IMG/M
3300007234|Ga0075460_10008018All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium4241Open in IMG/M
3300007234|Ga0075460_10277509Not Available553Open in IMG/M
3300007276|Ga0070747_1158008Not Available812Open in IMG/M
3300007345|Ga0070752_1346156Not Available558Open in IMG/M
3300007345|Ga0070752_1404710Not Available503Open in IMG/M
3300007539|Ga0099849_1157509Not Available875Open in IMG/M
3300007540|Ga0099847_1113710Not Available818Open in IMG/M
3300007540|Ga0099847_1149705Not Available695Open in IMG/M
3300007956|Ga0105741_1047863All Organisms → Viruses → Predicted Viral1052Open in IMG/M
3300009000|Ga0102960_1368483Not Available507Open in IMG/M
3300009071|Ga0115566_10333241Not Available888Open in IMG/M
3300009149|Ga0114918_10210684All Organisms → Viruses → Predicted Viral1124Open in IMG/M
3300009149|Ga0114918_10586226Not Available590Open in IMG/M
3300009426|Ga0115547_1172961Not Available685Open in IMG/M
3300009433|Ga0115545_1139524Not Available852Open in IMG/M
3300009433|Ga0115545_1149725Not Available815Open in IMG/M
3300009435|Ga0115546_1264662Not Available588Open in IMG/M
3300009440|Ga0115561_1228301Not Available700Open in IMG/M
3300009472|Ga0115554_1327964Not Available603Open in IMG/M
3300009495|Ga0115571_1179128Not Available875Open in IMG/M
3300009497|Ga0115569_10142152All Organisms → Viruses → Predicted Viral1159Open in IMG/M
3300009498|Ga0115568_10118696Not Available1290Open in IMG/M
3300009505|Ga0115564_10447314Not Available627Open in IMG/M
3300009507|Ga0115572_10345045Not Available839Open in IMG/M
3300009529|Ga0114919_10687045Not Available697Open in IMG/M
3300010148|Ga0098043_1157434Not Available640Open in IMG/M
3300010296|Ga0129348_1094938Not Available1054Open in IMG/M
3300010300|Ga0129351_1183698Not Available816Open in IMG/M
3300010316|Ga0136655_1176596Not Available636Open in IMG/M
3300010368|Ga0129324_10104811Not Available1216Open in IMG/M
3300012952|Ga0163180_11779386Not Available523Open in IMG/M
3300013010|Ga0129327_10821918Not Available529Open in IMG/M
3300016737|Ga0182047_1538700Not Available688Open in IMG/M
3300016791|Ga0182095_1249292Not Available504Open in IMG/M
3300017824|Ga0181552_10097612All Organisms → Viruses → Predicted Viral1634Open in IMG/M
3300017824|Ga0181552_10398368Not Available660Open in IMG/M
3300017950|Ga0181607_10082691Not Available2068Open in IMG/M
3300017950|Ga0181607_10296020Not Available911Open in IMG/M
3300018410|Ga0181561_10097607Not Available1616Open in IMG/M
3300018415|Ga0181559_10157815Not Available1329Open in IMG/M
3300018417|Ga0181558_10068657All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium2304Open in IMG/M
3300018424|Ga0181591_11108578Not Available532Open in IMG/M
3300018428|Ga0181568_10661292Not Available819Open in IMG/M
3300018876|Ga0181564_10181816All Organisms → Viruses → Predicted Viral1234Open in IMG/M
3300020051|Ga0181555_1318589Not Available534Open in IMG/M
3300021957|Ga0222717_10242842All Organisms → Viruses → Predicted Viral1049Open in IMG/M
3300021958|Ga0222718_10068517All Organisms → Viruses → Predicted Viral2178Open in IMG/M
3300021958|Ga0222718_10160200Not Available1262Open in IMG/M
3300021959|Ga0222716_10137449All Organisms → Viruses → Predicted Viral1609Open in IMG/M
3300021959|Ga0222716_10697249Not Available539Open in IMG/M
3300021960|Ga0222715_10011177All Organisms → cellular organisms → Bacteria7139Open in IMG/M
3300021964|Ga0222719_10580406Not Available656Open in IMG/M
3300022053|Ga0212030_1026541Not Available796Open in IMG/M
3300022068|Ga0212021_1010387Not Available1572Open in IMG/M
3300022071|Ga0212028_1048960Not Available788Open in IMG/M
3300022187|Ga0196899_1114516Not Available783Open in IMG/M
3300022905|Ga0255756_1090158All Organisms → Viruses → Predicted Viral1440Open in IMG/M
3300022926|Ga0255753_1168347Not Available964Open in IMG/M
3300023180|Ga0255768_10641200Not Available507Open in IMG/M
3300024262|Ga0210003_1182123Not Available875Open in IMG/M
3300024262|Ga0210003_1292685Not Available627Open in IMG/M
(restricted) 3300024518|Ga0255048_10530229Not Available570Open in IMG/M
3300025543|Ga0208303_1016635Not Available2155Open in IMG/M
3300025630|Ga0208004_1122654Not Available593Open in IMG/M
3300025671|Ga0208898_1015544Not Available3574Open in IMG/M
3300025674|Ga0208162_1200575Not Available507Open in IMG/M
3300025712|Ga0209305_1239571Not Available518Open in IMG/M
3300025751|Ga0208150_1014825All Organisms → cellular organisms → Bacteria2781Open in IMG/M
3300025815|Ga0208785_1124675Not Available613Open in IMG/M
3300025830|Ga0209832_1163749Not Available646Open in IMG/M
3300025832|Ga0209307_1210376Not Available560Open in IMG/M
3300025853|Ga0208645_1048837All Organisms → Viruses → Predicted Viral2033Open in IMG/M
3300025880|Ga0209534_10018404All Organisms → cellular organisms → Bacteria5200Open in IMG/M
3300025887|Ga0208544_10210254Not Available799Open in IMG/M
3300025890|Ga0209631_10013960Not Available6967Open in IMG/M
3300031539|Ga0307380_10464914All Organisms → Viruses → Predicted Viral1122Open in IMG/M
3300031539|Ga0307380_10574217Not Available976Open in IMG/M
3300031565|Ga0307379_10768110Not Available854Open in IMG/M
3300031566|Ga0307378_10251074All Organisms → Viruses → Predicted Viral1701Open in IMG/M
3300031566|Ga0307378_11329720Not Available559Open in IMG/M
3300031578|Ga0307376_10492759Not Available793Open in IMG/M
3300032277|Ga0316202_10022499All Organisms → cellular organisms → Bacteria3080Open in IMG/M
3300034375|Ga0348336_005357Not Available8926Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous35.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh16.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine15.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water7.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil6.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface5.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient5.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007956Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2umEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010148Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaGEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300016737Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011506CT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016791Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018415Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018876Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020051Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022905Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaGEnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025712Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025832Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025887Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1023423723300000117MarineMMTMMQTDNRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0055584_10253445113300004097Pelagic MarineRLMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0076924_121403933300005747MarineVTTMQTDTRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKSYVPKF*
Ga0075474_1011282343300006025AqueousMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0075474_1011652633300006025AqueousMKTDNRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0075478_1014212943300006026AqueousVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0075461_1023533233300006637AqueousMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVP
Ga0070749_1039391233300006802AqueousMKQYSYGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQK
Ga0075467_1015271443300006803AqueousMVTTMKTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0075467_1023492443300006803AqueousMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0070754_1026958333300006810AqueousMKQYSYGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGK
Ga0070754_1034474433300006810AqueousMKTDNRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYRAVKNLQMKGMRYVPRF*
Ga0075479_1014352733300006870AqueousMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0075475_1019559033300006874AqueousMFGRLMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0070750_1042967123300006916AqueousMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0070748_109310523300006920AqueousMKQYSYGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0075468_1023409313300007229AqueousQYSYGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0075460_1000801813300007234AqueousMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVP
Ga0075460_1027750913300007234AqueousMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVP
Ga0070747_115800833300007276AqueousMKQYSYGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKGGKSYVPRF*
Ga0070752_134615633300007345AqueousMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0070752_140471033300007345AqueousMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQK
Ga0099849_115750923300007539AqueousMIKDDRLLYVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQMKGMRYVPRF*
Ga0099847_111371033300007540AqueousMQTDNRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0099847_114970543300007540AqueousMIKDDRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0105741_104786343300007956Estuary WaterMVKDDRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0102960_136848323300009000Pond WaterMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKSYVPRF*
Ga0115566_1033324123300009071Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0114918_1021068443300009149Deep SubsurfaceMKTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0114918_1058622633300009149Deep SubsurfaceMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGK
Ga0115547_117296143300009426Pelagic MarineMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAEIDAKHREYMLVKNLQKEGKPYVPRF*
Ga0115545_113952453300009433Pelagic MarineMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMLVKNLQKEGKSYV
Ga0115545_114972523300009433Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKPYVPRF*
Ga0115546_126466213300009435Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAEIDAKHREYMLVKNLQKEGKPYVPRF*
Ga0115561_122830143300009440Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQMKG
Ga0115554_132796423300009472Pelagic MarineMQTDNRLVCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0115571_117912833300009495Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKSYVPRF*
Ga0115569_1014215213300009497Pelagic MarineMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEVKAYVPRF*
Ga0115568_1011869643300009498Pelagic MarineMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0115564_1044731443300009505Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQK
Ga0115572_1034504523300009507Pelagic MarineMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMLVKNLQKEGKAYVPRF*
Ga0114919_1068704523300009529Deep SubsurfaceMQTDNRLLCVDEEIRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF*
Ga0098043_115743423300010148MarineMSKDHRLLYVDEEVRRLMREYGDLCFERADQALIDAKHDQYMFVKNLQRKGVYYVPNF*
Ga0129348_109493833300010296Freshwater To Marine Saline GradientMQTDNRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0129351_118369843300010300Freshwater To Marine Saline GradientVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0136655_117659623300010316Freshwater To Marine Saline GradientMFKDDRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF*
Ga0129324_1010481143300010368Freshwater To Marine Saline GradientMKTDNRLLNVDEEVRRLMRGFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF*
Ga0163180_1177938623300012952SeawaterMSKDHRLLYVDEEVRRLMREYGDLCFERADQALINAKHDQYMFVKNLQRKGVYYVPNF*
Ga0129327_1082191833300013010Freshwater To Marine Saline GradientMFKDDRLLCVDEEVRRLMREFGDMCFDQADQEEIDAKHREYMAVKNLQMKGMRYVPRF
Ga0182047_153870043300016737Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMTVKNLQMKGMRYVPRF
Ga0182095_124929213300016791Salt MarshIKDDRLLYVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMLVKNLQKEGKSYVPRF
Ga0181552_1009761233300017824Salt MarshMKTDNRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMAVKNLQMKGMRYVPRF
Ga0181552_1039836833300017824Salt MarshMFGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMAVKNLQRKGMRYVPRF
Ga0181607_1008269143300017950Salt MarshMKTDNRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYIAVKNLQRKGMRYVPRF
Ga0181607_1029602033300017950Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMAVKNLQMKGMRYVPRF
Ga0181561_1009760733300018410Salt MarshVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMAVKNLQRKGMRYVPR
Ga0181559_1015781533300018415Salt MarshMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMAVKNLQRKGMRYVPRF
Ga0181558_1006865723300018417Salt MarshMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMAVKNLQRKGMRYVPRF
Ga0181591_1110857833300018424Salt MarshMKTDNRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMAVKNLQRKGMRYVPRF
Ga0181568_1066129233300018428Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMAVKNLQRKGMRYVPRF
Ga0181564_1018181633300018876Salt MarshMQTDNRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMAVKNLQMKGMRYVPRF
Ga0181555_131858933300020051Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMLVKNLQ
Ga0222717_1024284213300021957Estuarine WaterMTMFKDDRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKS
Ga0222718_1006851713300021958Estuarine WaterMTMFKDDRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEG
Ga0222718_1016020023300021958Estuarine WaterMKQYSYGRLMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0222716_1013744973300021959Estuarine WaterMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKSYVPRF
Ga0222716_1069724933300021959Estuarine WaterMTMFKDDRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0222715_1001117743300021960Estuarine WaterMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0222719_1058040633300021964Estuarine WaterMMTMMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0212030_102654113300022053AqueousMQTDNKLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF
Ga0212021_101038743300022068AqueousMKTDNRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF
Ga0212028_104896013300022071AqueousTGRLKTCGRLMMTMMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0196899_111451613300022187AqueousFGRLMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0255756_109015853300022905Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMLVKNLQKEGKSYVPRF
Ga0255753_116834753300022926Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKYREYMAVKNLQMKGMR
Ga0255768_1064120023300023180Salt MarshMTMIKDDRLLYVDEEVRRLMREFGDMCFDQADQDAIDAKYREYMLVKNLQKEGKSYVPR
Ga0210003_118212343300024262Deep SubsurfaceMMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKPYVPRF
Ga0210003_129268513300024262Deep SubsurfaceMKTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF
(restricted) Ga0255048_1053022933300024518SeawaterKDDRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF
Ga0208303_101663553300025543AqueousMQTDNRLLYVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF
Ga0208004_112265433300025630AqueousMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0208898_101554423300025671AqueousMFGRLMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0208162_120057533300025674AqueousMTMIKDDRLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF
Ga0209305_123957113300025712Pelagic MarineGKPRRLMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF
Ga0208150_101482513300025751AqueousLLNVDEEVRRLMREFGDMCFDQVEQEEIDAKHREYMAVKNLQMKGMRYVPRF
Ga0208785_112467533300025815AqueousQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0209832_116374933300025830Pelagic MarineMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF
Ga0209307_121037633300025832Pelagic MarineMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF
Ga0208645_104883743300025853AqueousVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPR
Ga0209534_1001840473300025880Pelagic MarineVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPR
Ga0208544_1021025433300025887AqueousMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0209631_1001396043300025890Pelagic MarineMFGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDTIDAKHREYMLVKNLQKEGKSYVPRF
Ga0307380_1046491423300031539SoilMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMLVKNLQKEGKAYVPKF
Ga0307380_1057421743300031539SoilMTMIKDDRLLNVDEEVRRLMREFGDMCFDQDQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0307379_1076811043300031565SoilMVTTMQTDNRLLNVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMLVKNLQKEGKAYVPKF
Ga0307378_1025107443300031566SoilMKTDNRLLCVDEEVRRLMREFGDMCFDQADQAAIDAKHREYMSVKNLQKEGKAYVPRF
Ga0307378_1132972033300031566SoilMTMIKDDRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQK
Ga0307376_1049275913300031578SoilMTMIKDDRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKPY
Ga0316202_1002249963300032277Microbial MatMKQYSYGRLMVTTMQTDNRLLCVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF
Ga0348336_005357_1160_13363300034375AqueousMQTDNRLLNVDEEVRRLMREFGDMCFDQADQDAIDAKHREYMLVKNLQKEGKSYVPRF


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