NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105042

Metagenome / Metatranscriptome Family F105042

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105042
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 53 residues
Representative Sequence MPRGQLTKDEMKYQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKINEYAR
Number of Associated Samples 79
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 71.00 %
% of genes near scaffold ends (potentially truncated) 28.00 %
% of genes from short scaffolds (< 2000 bps) 75.00 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (32.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(16.000 % of family members)
Environment Ontology (ENVO) Unclassified
(30.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(35.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.68%    β-sheet: 0.00%    Coil/Unstructured: 54.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00504Chloroa_b-bind 23.00
PF13529Peptidase_C39_2 16.00
PF08534Redoxin 5.00
PF00124Photo_RC 4.00
PF01755Glyco_transf_25 4.00
PF12849PBP_like_2 4.00
PF04966OprB 3.00
PF00959Phage_lysozyme 2.00
PF12850Metallophos_2 1.00
PF00149Metallophos 1.00
PF01764Lipase_3 1.00
PF13884Peptidase_S74 1.00
PF13489Methyltransf_23 1.00
PF01370Epimerase 1.00
PF09612HtrL_YibB 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3306Glycosyltransferase involved in LPS biosynthesis, GR25 familyCell wall/membrane/envelope biogenesis [M] 4.00
COG3659Carbohydrate-selective porin OprBCell wall/membrane/envelope biogenesis [M] 3.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.00 %
UnclassifiedrootN/A32.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000756|JGI12421J11937_10008457All Organisms → Viruses → Predicted Viral4003Open in IMG/M
3300000756|JGI12421J11937_10077530All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes972Open in IMG/M
3300001580|Draft_10191706All Organisms → Viruses944Open in IMG/M
3300001580|Draft_10370585Not Available597Open in IMG/M
3300002145|S2t7BSb_10589971All Organisms → Viruses → Predicted Viral1282Open in IMG/M
3300002368|B570J29647_101302All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae846Open in IMG/M
3300003430|JGI25921J50272_10030158All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300004112|Ga0065166_10182674All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300005582|Ga0049080_10104864All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria961Open in IMG/M
3300005662|Ga0078894_11650851Not Available527Open in IMG/M
3300005805|Ga0079957_1033242All Organisms → Viruses → Predicted Viral3383Open in IMG/M
3300005805|Ga0079957_1077591All Organisms → cellular organisms → Bacteria1892Open in IMG/M
3300005805|Ga0079957_1359452All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes634Open in IMG/M
3300005943|Ga0073926_10079293Not Available657Open in IMG/M
3300006639|Ga0079301_1104357Not Available866Open in IMG/M
3300007547|Ga0102875_1070307All Organisms → Viruses → Predicted Viral1133Open in IMG/M
3300007973|Ga0105746_1070578All Organisms → Viruses → Predicted Viral1120Open in IMG/M
3300008110|Ga0114343_1093313All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300008267|Ga0114364_1100966Not Available898Open in IMG/M
3300008448|Ga0114876_1081560All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Mazuvirus → Mazuvirus scam71341Open in IMG/M
3300008996|Ga0102831_1252760Not Available582Open in IMG/M
3300009051|Ga0102864_1105254All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes770Open in IMG/M
3300009075|Ga0105090_10168143All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1364Open in IMG/M
3300009085|Ga0105103_10443419All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae723Open in IMG/M
3300009086|Ga0102812_10039963All Organisms → Viruses → Predicted Viral2641Open in IMG/M
3300009149|Ga0114918_10164956All Organisms → Viruses → Predicted Viral1311Open in IMG/M
3300009149|Ga0114918_10253774Not Available999Open in IMG/M
3300009149|Ga0114918_10324152Not Available855Open in IMG/M
3300009168|Ga0105104_10833571All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes537Open in IMG/M
3300009170|Ga0105096_10349692Not Available758Open in IMG/M
3300009451|Ga0127402_1131168All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01511Open in IMG/M
3300009504|Ga0114946_10215412All Organisms → Viruses1033Open in IMG/M
3300009504|Ga0114946_10460807Not Available653Open in IMG/M
3300013004|Ga0164293_10003423All Organisms → Viruses13529Open in IMG/M
3300013372|Ga0177922_10820136All Organisms → Viruses → Predicted Viral1322Open in IMG/M
3300017766|Ga0181343_1090596All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01872Open in IMG/M
3300017766|Ga0181343_1103333Not Available808Open in IMG/M
3300017963|Ga0180437_10142305All Organisms → Viruses → Predicted Viral1954Open in IMG/M
3300018682|Ga0188851_1002723All Organisms → Viruses → Predicted Viral2781Open in IMG/M
3300019096|Ga0188835_1001068All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3557Open in IMG/M
3300019122|Ga0188839_1022614All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Atlauavirus646Open in IMG/M
3300020048|Ga0207193_1671702Not Available687Open in IMG/M
3300020074|Ga0194113_10233391All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1443Open in IMG/M
3300020141|Ga0211732_1001830All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9067Open in IMG/M
3300020141|Ga0211732_1094141All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes823Open in IMG/M
3300020151|Ga0211736_10428730All Organisms → Viruses → Predicted Viral1411Open in IMG/M
3300020151|Ga0211736_11012324All Organisms → Viruses → Predicted Viral2390Open in IMG/M
3300020160|Ga0211733_10455047All Organisms → Viruses → Predicted Viral3880Open in IMG/M
3300020161|Ga0211726_10606682All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus774Open in IMG/M
3300020499|Ga0208084_1000055Not Available28134Open in IMG/M
3300021961|Ga0222714_10106209All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS11765Open in IMG/M
3300021961|Ga0222714_10129103Not Available1549Open in IMG/M
3300021962|Ga0222713_10560601Not Available673Open in IMG/M
3300021963|Ga0222712_10001027Not Available35804Open in IMG/M
3300021963|Ga0222712_10004347Not Available14866Open in IMG/M
3300021963|Ga0222712_10040810All Organisms → Viruses → Predicted Viral3551Open in IMG/M
3300022407|Ga0181351_1068459All Organisms → Viruses → Predicted Viral1443Open in IMG/M
3300022407|Ga0181351_1140598All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01881Open in IMG/M
3300024262|Ga0210003_1003497All Organisms → Viruses12739Open in IMG/M
3300024262|Ga0210003_1288882Not Available633Open in IMG/M
3300025135|Ga0209498_1256573Not Available610Open in IMG/M
3300027205|Ga0208926_1049736Not Available621Open in IMG/M
3300027211|Ga0208307_1042257All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes701Open in IMG/M
3300027213|Ga0208555_1002805All Organisms → Viruses → Predicted Viral2689Open in IMG/M
3300027217|Ga0208928_1065731Not Available526Open in IMG/M
3300027227|Ga0208929_1046615All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae914Open in IMG/M
3300027261|Ga0208933_1081689Not Available519Open in IMG/M
3300027608|Ga0208974_1123546Not Available674Open in IMG/M
3300027675|Ga0209077_1024147All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1635Open in IMG/M
3300027683|Ga0209392_1199968Not Available608Open in IMG/M
3300027743|Ga0209593_10019258All Organisms → Viruses → Predicted Viral2770Open in IMG/M
3300027797|Ga0209107_10048114All Organisms → Viruses2411Open in IMG/M
3300031519|Ga0307488_10265085All Organisms → Viruses → Predicted Viral1125Open in IMG/M
3300031539|Ga0307380_10627638Not Available919Open in IMG/M
3300031566|Ga0307378_10091981All Organisms → Viruses → Predicted Viral3187Open in IMG/M
3300031669|Ga0307375_10770549All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01547Open in IMG/M
3300031673|Ga0307377_10242519All Organisms → Viruses → Predicted Viral1385Open in IMG/M
3300031673|Ga0307377_10268143All Organisms → Viruses → Predicted Viral1303Open in IMG/M
3300031707|Ga0315291_10131874All Organisms → Viruses → Predicted Viral2644Open in IMG/M
3300031707|Ga0315291_10408622All Organisms → Viruses → Predicted Viral1288Open in IMG/M
3300031746|Ga0315293_10539120Not Available894Open in IMG/M
3300031772|Ga0315288_11120924All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes686Open in IMG/M
3300031885|Ga0315285_10375198Not Available1028Open in IMG/M
3300031951|Ga0315904_11080082Not Available628Open in IMG/M
3300031997|Ga0315278_10166522All Organisms → Viruses → Predicted Viral2258Open in IMG/M
3300032053|Ga0315284_10267418All Organisms → Viruses → Predicted Viral2171Open in IMG/M
3300032053|Ga0315284_10573517All Organisms → Viruses → Predicted Viral1352Open in IMG/M
3300032053|Ga0315284_11094260Not Available887Open in IMG/M
3300032093|Ga0315902_11168618All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae557Open in IMG/M
3300032163|Ga0315281_10203888All Organisms → Viruses → Predicted Viral2203Open in IMG/M
3300032342|Ga0315286_10796467Not Available957Open in IMG/M
3300032342|Ga0315286_11196442All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01744Open in IMG/M
3300032401|Ga0315275_12119100All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes590Open in IMG/M
3300032516|Ga0315273_10611860All Organisms → Viruses → Predicted Viral1444Open in IMG/M
3300032516|Ga0315273_13135770Not Available513Open in IMG/M
3300033233|Ga0334722_10002163Not Available22642Open in IMG/M
3300033521|Ga0316616_100338856All Organisms → Viruses → Predicted Viral1624Open in IMG/M
3300033980|Ga0334981_0011836All Organisms → Viruses → Predicted Viral4944Open in IMG/M
3300034021|Ga0335004_0618093All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Shandvirus → unclassified Shandvirus → Cyanophage S-RIM4571Open in IMG/M
3300034061|Ga0334987_0083334All Organisms → Viruses → Predicted Viral2515Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment16.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake10.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine10.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment7.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water6.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface5.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil5.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment3.00%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment3.00%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater2.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton2.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.00%
Hydrocarbon Resource EnvironmentsEngineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments2.00%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment1.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.00%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine1.00%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond1.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.00%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand1.00%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300001580Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6EngineeredOpen in IMG/M
3300002145S2t7BSb (114f)EnvironmentalOpen in IMG/M
3300002368Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnionEnvironmentalOpen in IMG/M
3300003430Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SDEnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300005943Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14EnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300007547Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02EnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009051Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02EnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009451Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300009504Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep SedimentEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300018682Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1EnvironmentalOpen in IMG/M
3300019096Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p1EnvironmentalOpen in IMG/M
3300019122Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1EnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020499Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025135Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes)EnvironmentalOpen in IMG/M
3300027205Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027211Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027213Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027217Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027227Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027261Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027675Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027683Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027743Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027797Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031885Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033521Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_BEnvironmentalOpen in IMG/M
3300033980Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007EnvironmentalOpen in IMG/M
3300034021Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_10008457103300000756Freshwater And SedimentMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYAR*
JGI12421J11937_1007753023300000756Freshwater And SedimentMPRGQLTRDEMKYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYSR*
Draft_1019170623300001580Hydrocarbon Resource EnvironmentsMPRGQLTKDEMKYQVLKIKQRLQNEHIGYTSDPKALADQYLNMVLDKINEYAR*
Draft_1037058523300001580Hydrocarbon Resource EnvironmentsMPRGQLTKDEMKYQVLKIKQRLQNEHIGYTSDPKALADQYLNMVLDKISEYAR*
S2t7BSb_1058997123300002145MarineMPRGQLTKEEMKYQVLKLKQKLQNEHIGYTSDPKALADQYLNMLLDKINEYSR*
B570J29647_10130223300002368FreshwaterMPRGQLTKDEIKYQVXKLKQKLQNEHIGYTSDPKSLADQYLNMVLDKINEYAR*
JGI25921J50272_1003015843300003430Freshwater LakeMPRGQLTKDEIKHQVLKLKQKLQTEQIGYTSDPKSLADQYLNMVLDKIDEYAR*
Ga0065166_1018267423300004112Freshwater LakeMPRGQLTKDEMKTQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKIDEYRV*
Ga0049080_1010486423300005582Freshwater LenticMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINEYSR*
Ga0078894_1165085113300005662Freshwater LakeLNTEAEFFSIMPRGQLTKDEMKHQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKINEYSR*
Ga0079957_103324233300005805LakeMPRGHLTKDEMKVEVLKLKQKLYNEKMGYTSDPKALADQYLNMVLDKINEYAR*
Ga0079957_107759123300005805LakeMPRGQLTKDEMKCQVLKLKQKLQNEHIGYTSDPKSLADQYLNMVLDKINEYAR*
Ga0079957_135945223300005805LakeKLTKDIIKCEVLKIKRDLYNENIHWTSNPKGLADKYLNRVLDKINEYRE*
Ga0073926_1007929313300005943SandMPRGQLTKEEMKYQVLKLKQKLQNEHITYTSDPKALADQYLNMVLDKINEYSC*
Ga0079301_110435713300006639Deep SubsurfaceMPRGQLTKDEMKYQVLKLKQKLQNEHIGYTSDPKSLADQYLNMVLDKINEYAR*
Ga0102875_107030743300007547EstuarineMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKALADQYLNMVLDKINEYSC*
Ga0105746_107057813300007973Estuary WaterERRIFCMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKELADQYLNMVLDKINEYSR*
Ga0114343_109331323300008110Freshwater, PlanktonMGAEFFNIMPRGQLTKEEIKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINEYSR*
Ga0114364_110096613300008267Freshwater, PlanktonYYMPRGQLTKDQMKYHILKLKQELYNEKISYTSDPKALADQYLNMVLDKINEYAN*
Ga0114876_108156013300008448Freshwater LakeMPRGRLTKDEMRVNVLKLKQELQKESIGYTSDPKALANQYLN
Ga0102831_125276023300008996EstuarineMPRGQLTKDTMKCEVLKIKDKLYKQDISWTSDPKLLAHQYLNMVLDKIEEYNY*
Ga0102864_110525413300009051EstuarineMPRGQLTKDEIKCWVLKLKQKLYNENIGYTSDPKALADSYLNKVLEKIEECQR*
Ga0105090_1016814343300009075Freshwater SedimentMPRCNLTKDEMKVHVMKLKHKLHNESFSYTSDPKSLADQYLNMVLAKIEEYAR*
Ga0105103_1044341933300009085Freshwater SedimentMERRIFYMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKINEYGA
Ga0102812_1003996313300009086EstuarineMIFCMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKALADQYLNMVLDKINEYSC*
Ga0114918_1016495613300009149Deep SubsurfaceMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKAL
Ga0114918_1025377423300009149Deep SubsurfaceEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKINEYSR*
Ga0114918_1032415223300009149Deep SubsurfaceMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKINEYSR*
Ga0105104_1083357113300009168Freshwater SedimentMERRIFYMPRGQLTKEEMKYQVLKLKQKLQNEHIGYTSDPKALADQYLNMVLDKINEYYR
Ga0105096_1034969223300009170Freshwater SedimentMPRGQLTKEEMKYQVLKLKQKLQNEHIGYTSDPKALADQYLNMVLDKINEHYR*
Ga0127402_113116813300009451Meromictic PondMPRGQLTKEEMKYQVLKLKQKLQSEQIGYTSDPKALANKYLNEVLDKIEEY
Ga0114946_1021541223300009504SedimentMPRGQLTKDEMKYQVLKLKQKLQNEQIGYTSDPKALADQYLNMVLDKIDEYVR*
Ga0114946_1046080713300009504SedimentMPRGQITKDEVKYQVMKLKQKLYNEDVTYTSDPKALANKYFNLLLERIDEYAR*
Ga0164293_1000342383300013004FreshwaterMPRGQLTKDEIKYQVLKLKQKLQNEHIGYTSDPKSLADQYLNMVLDKINEYAR*
Ga0177922_1082013623300013372FreshwaterMSRGQLTKEEMKYQILKLKQKLQNEQITYTSDPKALADQYLNMVLDKINEYSR*
Ga0181343_109059623300017766Freshwater LakeMPRGQLTKDEMKTQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKIDEYRV
Ga0181343_110333323300017766Freshwater LakeMPRGQLTKDEIKHQVLKLKQKLQTEQIGYTSDPKSLADQYLNMVLDKIDEYAR
Ga0180437_1014230553300017963Hypersaline Lake SedimentMPRGQLTKQEIKIILLTYKKELYEENVSYTSDPKALANKYLNKILEKIEEYAR
Ga0188851_100272353300018682Freshwater LakeMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKINEYGA
Ga0188835_100106823300019096Freshwater LakeMPRGQLTKDEMKYQVLKLKQKLQSEQIGYTSDPKALANKYLNEVLDKIEEYRVQ
Ga0188839_102261423300019122Freshwater LakeRIFCMPRGQLTKEEMKYQVLKLKQKLQNEHIGYTSDPKALADQYLNMLLDKINEYSR
Ga0207193_167170213300020048Freshwater Lake SedimentFMPRGQLTKDEMKVQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKINEYRV
Ga0194113_1023339133300020074Freshwater LakeMPRAQLTKDEIKCQVLKLKQKLQTEQIEYTSDPKSLADKYLNLVLDKINEYYR
Ga0211732_1001830103300020141FreshwaterMERRIFCMPRGQLTKDEMKYQVLKLKQKLQNEHIGYTSDPKALADQYLNMVLDKINEYYR
Ga0211732_109414123300020141FreshwaterMESRIFYMPRGQLTRDEMEYQVLKLKQKLQNEHIGYTSDPKALADEYLNMVLDKINEYSR
Ga0211736_1042873053300020151FreshwaterMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYAR
Ga0211736_1101232443300020151FreshwaterMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINEYSR
Ga0211733_1045504723300020160FreshwaterMPRGQLTRDEMEYQVLKLKQKLQNEHIGYTSDPKALADEYLNMVLDKINEYSR
Ga0211726_1060668213300020161FreshwaterMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKINEYSR
Ga0208084_1000055153300020499FreshwaterMPRGQLTKDEIKYQVLKLKQKLQNEHIGYTSDPKSLADQYLNMVLDKINEYAR
Ga0222714_1010620923300021961Estuarine WaterMPRGQLTKDEMKYQILKLKQKLQNECIRYTSDPKALADQYLNKLLDKIEEYRV
Ga0222714_1012910323300021961Estuarine WaterMESRIFYMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYSR
Ga0222713_1056060123300021962Estuarine WaterMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKIEEYAQ
Ga0222712_10001027693300021963Estuarine WaterMPRGQLTKEEMKYQVLKLKQKLQTEYIGYTSDPKALADQYLNMVLDKINEYSC
Ga0222712_10004347163300021963Estuarine WaterMPRGQLTKDEMKSQVLKLKQKLQNEQIGYTSDPKSLADQYLNMVLDKINEYAR
Ga0222712_1004081033300021963Estuarine WaterMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYSR
Ga0181351_106845933300022407Freshwater LakeMPRGQLTKDEIKYQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKINEYAR
Ga0181351_114059823300022407Freshwater LakeMPRGQLTKDEMKVQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKINEYRV
Ga0210003_1003497173300024262Deep SubsurfaceMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKI
Ga0210003_128888223300024262Deep SubsurfacePLNTERRIFCMPRGQLTKEEMKYQVLKLKQKLQTEQITYTSDPKALADQYLNMVLDKINEYSR
Ga0209498_125657323300025135SedimentMSRGQLTKDEMKYQVLKLKQKLQNEQIGYTSDPKALADQYLNMVLDKIDEYVR
Ga0208926_104973623300027205EstuarineMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKALADQYLNMVLDKINEYSI
Ga0208307_104225723300027211EstuarineMPRGQLTKDEIKCWVLKLKQKLYNENIGYTSDPKALADSYLNKVLEKIEECQR
Ga0208555_100280583300027213EstuarineMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKELADQYLNMVLDKINEYSR
Ga0208928_106573123300027217EstuarineMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKALADQYLNMVLDKINEYSC
Ga0208929_104661513300027227EstuarineMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKAL
Ga0208933_108168913300027261EstuarineRIFCMPRGQLTKEEMKYQVLKLKQKLQNEQITYTSDPKALADQYLNMVLDKINEYSC
Ga0208974_112354623300027608Freshwater LenticMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVL
Ga0209077_102414743300027675Freshwater SedimentMPRCNLTKDEMKVHVMKLKHKLHNESFSYTSDPKSLADQYLNMVLAKIEEYAR
Ga0209392_119996813300027683Freshwater SedimentMPRGQLTKEEMKYQVLKLKQKLQNEHIGYTSDPKALADQYLNMVLDKINEHYR
Ga0209593_1001925813300027743Freshwater SedimentMGEGFFYMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINEYSR
Ga0209107_1004811413300027797Freshwater And SedimentMESRIFYMPRGQLTRDEMKYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYSR
Ga0307488_1026508523300031519Sackhole BrineMPRGQLTRDEMKYQVLKLKDKLQNEQITYTSDPKALADQYLNMVLDKINQYSR
Ga0307380_1062763823300031539SoilMPRGQLTKDEMKCQVLKLKQKLQSEQIGYTSDPKALADQYLNMVLDKINEYSR
Ga0307378_1009198123300031566SoilMPRGQLTKDEMKCQVLKLKQKLQSEQIGYTSDPKALANKYLNEVLDKIEEYRVQ
Ga0307375_1077054923300031669SoilTESGIFFMPRGQLTKDEMKCQVLKLKQKLQSEQIGYTSDPKALADQYLNMVLDKINEYSR
Ga0307377_1024251923300031673SoilMERRIFCMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINQYSR
Ga0307377_1026814323300031673SoilMESRIFYMPRGQLTKEEMEYQVLKLKQKLQNEHIGYTSDPKALADQYLNMVLDKINQYSR
Ga0315291_1013187413300031707SedimentMPRGQLTKDEMKYQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKI
Ga0315291_1040862223300031707SedimentMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKSLADEYLNMVLDKINEYAR
Ga0315293_1053912013300031746SedimentMPRGQLTKDEMKYQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKINEYAR
Ga0315288_1112092423300031772SedimentMPRGQLTKDEMKYQVLKLKQKLQTEQIGYTSDPKALADQYLNMVLDKIN
Ga0315285_1037519813300031885SedimentMESRIFYMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKSLADEYLNMVLDKINEYAR
Ga0315904_1108008223300031951FreshwaterMPRGRLTKDEMRVNVLKLKQELQKESIGYTSDPKALANQYL
Ga0315278_1016652263300031997SedimentGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKSLADEYLNMVLDKINEYAR
Ga0315284_1026741833300032053SedimentMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKIEEYAQ
Ga0315284_1057351713300032053SedimentNMESRIFYMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKSLADEYLNMVLDKINEYA
Ga0315284_1109426023300032053SedimentMPRGQLTKDEMKYQVLKLKQRLQHEQNGYTSDPKALADQYLNMVLDKIEEYAR
Ga0315902_1116861813300032093FreshwaterMGAEFFNIMPRGQLTKEEIKYQVLKLKQKLQTEHIGYTSDPKALADQYLN
Ga0315281_1020388833300032163SedimentMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINEYAR
Ga0315286_1079646723300032342SedimentMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADQYLNMVLDKINEYAR
Ga0315286_1119644213300032342SedimentMERRIFYMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKIEEYAQ
Ga0315275_1211910023300032401SedimentMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADQYL
Ga0315273_1061186023300032516SedimentMESRIFYMPRGQLTRDEMEYQVLKLKDKLQNEHIGYTSDPKALADEYLNMVLDKINEYAR
Ga0315273_1313577023300032516SedimentGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKIEEYAQ
Ga0334722_1000216333300033233SedimentMPRGQLTKDEMKYQVLKLKQKLQTEKMGYISDPKALADQYLNMVLGKINEYAR
Ga0316616_10033885643300033521SoilMPRNKLTKDEMKCAVLKLKRNLHNENIGWTSDPKGLAQRYLNHVLDIIEEYRE
Ga0334981_0011836_3217_33783300033980FreshwaterMPRGQLTKEEMKYQVLKLKQKLQTEHIGYTSDPKALADQYLNMVLDKINEYSC
Ga0335004_0618093_3_1133300034021FreshwaterMPRGQLTKDEIKYQVLKLKQKLQNEHIGYTSDPKSLA
Ga0334987_0083334_1700_18613300034061FreshwaterMPRGQLTKDEIKYQVLKLKTKLQEEKINYTSDPKSLANQYLNMVLDKINEYSW

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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