Metagenome / Metatranscriptome Family F104951

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104951
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	140 residues
Representative Sequence	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVKLPDIALLVLNTYGTGIDVGDLIRRVRAAKPGLPVLHIGSTVPHGLPDDVPTLDETFTPDQLLVAVGALIERRRRARSA
Number of Associated Samples	81
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.00 %
% of genes near scaffold ends (potentially truncated)	53.00 %
% of genes from short scaffolds (< 2000 bps)	92.00 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (27.000 % of family members)
Environment Ontology (ENVO)	Unclassified (39.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.70% β-sheet: 14.47% Coil/Unstructured: 52.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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SCOP family	SCOP domain	Representative PDB	TM-score
c.23.1.0: CheY-like	d3hv2a_	3hv2	0.87
c.23.1.0: CheY-like	d3jtea1	3jte	0.87
c.23.1.0: CheY-like	d3hv2a_	3hv2	0.87
c.23.1.0: CheY-like	d3jtea1	3jte	0.87
c.23.1.1: CheY-like	d1w25a1	1w25	0.86
c.23.1.0: CheY-like	d3h5ia_	3h5i	0.86
c.23.1.1: CheY-like	d1w25a1	1w25	0.86
c.23.1.0: CheY-like	d3h5ia_	3h5i	0.86
c.23.1.0: CheY-like	d2rjna_	2rjn	0.85
c.23.1.0: CheY-like	d2rjna_	2rjn	0.85

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF13977	TetR_C_6	2.00
PF02224	Cytidylate_kin	2.00
PF00072	Response_reg	1.00
PF01966	HD	1.00
PF13493	DUF4118	1.00
PF01068	DNA_ligase_A_M	1.00
PF09335	SNARE_assoc	1.00
PF08327	AHSA1	1.00
PF14534	DUF4440	1.00
PF00351	Biopterin_H	1.00
PF03952	Enolase_N	1.00
PF00589	Phage_integrase	1.00
PF00892	EamA	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0283	Cytidylate kinase	Nucleotide transport and metabolism [F]	2.00
COG0148	Enolase	Carbohydrate transport and metabolism [G]	1.00
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.00
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.00
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.00
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.00
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.00
COG3186	Phenylalanine-4-hydroxylase	Amino acid transport and metabolism [E]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	81.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	81.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	80.00 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.00 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.00 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.00 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.00 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	80.00 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.00 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.00 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.00 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	80.00 %
Acetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter	3.00 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.00 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1.00 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	1.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	80.00 %
Acetobacter pasteurianus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter pasteurianus	2.00 %
Acetobacter malorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter malorum	1.00 %
Comamonadaceae bacterium URHA0028	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	1.00 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	1.00 %
Pseudomonas putida group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group	1.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	80.00 %
Acetobacter pasteurianus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter pasteurianus	2.00 %
Sphingomonas sp. ATCC 31555	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. ATCC 31555	1.00 %
Pseudomonas fulva	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas fulva	1.00 %
Acetobacter malorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter malorum	1.00 %
Comamonadaceae bacterium URHA0028	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	1.00 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.00 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9035413	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1849	Open in IMG/M
3300000890\|JGI11643J12802_10756712	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2779	Open in IMG/M
3300000956\|JGI10216J12902_104056271	All Organisms → cellular organisms → Bacteria → Proteobacteria	2172	Open in IMG/M
3300000956\|JGI10216J12902_111891533	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300004153\|Ga0063455_100008620	All Organisms → cellular organisms → Bacteria	2227	Open in IMG/M
3300004479\|Ga0062595_101947266	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	565	Open in IMG/M
3300004480\|Ga0062592_100539638	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	975	Open in IMG/M
3300004778\|Ga0062383_10080183	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1356	Open in IMG/M
3300004778\|Ga0062383_10185433	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	952	Open in IMG/M
3300005336\|Ga0070680_100410329	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300005341\|Ga0070691_10321667	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	851	Open in IMG/M
3300005343\|Ga0070687_100767396	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	680	Open in IMG/M
3300005439\|Ga0070711_100803411	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300005445\|Ga0070708_100782424	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300005467\|Ga0070706_101433133	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	632	Open in IMG/M
3300005536\|Ga0070697_100829375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	819	Open in IMG/M
3300005549\|Ga0070704_101947850	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	545	Open in IMG/M
3300005564\|Ga0070664_101014489	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	780	Open in IMG/M
3300005616\|Ga0068852_102819614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter pasteurianus	504	Open in IMG/M
3300005841\|Ga0068863_101757589	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	630	Open in IMG/M
3300005843\|Ga0068860_100786093	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	965	Open in IMG/M
3300005844\|Ga0068862_101220882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter pasteurianus	751	Open in IMG/M
3300005844\|Ga0068862_102769726	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300006755\|Ga0079222_10014112	All Organisms → cellular organisms → Bacteria	3014	Open in IMG/M
3300006804\|Ga0079221_10224875	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1047	Open in IMG/M
3300006806\|Ga0079220_10595239	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	784	Open in IMG/M
3300006845\|Ga0075421_100385655	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1686	Open in IMG/M
3300006845\|Ga0075421_102244042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter malorum	575	Open in IMG/M
3300006847\|Ga0075431_101078697	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	768	Open in IMG/M
3300006852\|Ga0075433_10334211	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300006904\|Ga0075424_102423068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. ATCC 31555	550	Open in IMG/M
3300006904\|Ga0075424_102717866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	516	Open in IMG/M
3300006954\|Ga0079219_10007838	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3415	Open in IMG/M
3300006972\|Ga0075518_1045646	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	878	Open in IMG/M
3300007004\|Ga0079218_10987355	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	841	Open in IMG/M
3300009174\|Ga0105241_10894804	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	824	Open in IMG/M
3300009789\|Ga0126307_11014540	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	671	Open in IMG/M
3300009818\|Ga0105072_1127534	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	524	Open in IMG/M
3300010040\|Ga0126308_10373254	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	948	Open in IMG/M
3300010045\|Ga0126311_10328791	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1159	Open in IMG/M
3300010045\|Ga0126311_10534510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	921	Open in IMG/M
3300010399\|Ga0134127_10757676	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1016	Open in IMG/M
3300010401\|Ga0134121_13270767	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300010403\|Ga0134123_11051969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	834	Open in IMG/M
3300011003\|Ga0138514_100124757	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	567	Open in IMG/M
3300011003\|Ga0138514_100125570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas fulva	565	Open in IMG/M
3300012045\|Ga0136623_10156516	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	987	Open in IMG/M
3300012212\|Ga0150985_122802861	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1659	Open in IMG/M
3300012469\|Ga0150984_100570866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1388	Open in IMG/M
3300012529\|Ga0136630_1039340	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300012929\|Ga0137404_11912763	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	552	Open in IMG/M
3300012951\|Ga0164300_10179799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1018	Open in IMG/M
3300014325\|Ga0163163_13029722	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	524	Open in IMG/M
3300017789\|Ga0136617_10115988	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2308	Open in IMG/M
3300018429\|Ga0190272_10495929	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1035	Open in IMG/M
3300018429\|Ga0190272_10504993	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1028	Open in IMG/M
3300018429\|Ga0190272_11196926	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	746	Open in IMG/M
3300019377\|Ga0190264_12242006	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	510	Open in IMG/M
3300021090\|Ga0210377_10532477	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	673	Open in IMG/M
3300025524\|Ga0209817_1078377	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	548	Open in IMG/M
3300025917\|Ga0207660_11109015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	645	Open in IMG/M
3300025918\|Ga0207662_10733682	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	694	Open in IMG/M
3300026067\|Ga0207678_11186170	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	676	Open in IMG/M
3300027843\|Ga0209798_10157862	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1134	Open in IMG/M
3300027909\|Ga0209382_11688818	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	622	Open in IMG/M
3300028592\|Ga0247822_10916572	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	720	Open in IMG/M
3300028807\|Ga0307305_10231409	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	846	Open in IMG/M
3300028812\|Ga0247825_10728383	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	714	Open in IMG/M
3300028872\|Ga0307314_10278372	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	527	Open in IMG/M
3300030006\|Ga0299907_10640706	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	821	Open in IMG/M
3300030336\|Ga0247826_11803277	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	501	Open in IMG/M
3300030619\|Ga0268386_10257765	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1280	Open in IMG/M
3300030987\|Ga0308155_1012105	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300030988\|Ga0308183_1014077	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300030988\|Ga0308183_1103774	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	651	Open in IMG/M
3300030988\|Ga0308183_1157084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	564	Open in IMG/M
3300030990\|Ga0308178_1009409	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300030990\|Ga0308178_1012427	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1224	Open in IMG/M
3300030990\|Ga0308178_1022246	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1017	Open in IMG/M
3300030990\|Ga0308178_1044358	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	810	Open in IMG/M
3300031095\|Ga0308184_1002705	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300031099\|Ga0308181_1036875	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	875	Open in IMG/M
3300031099\|Ga0308181_1084062	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	664	Open in IMG/M
3300031124\|Ga0308151_1043244	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	533	Open in IMG/M
3300031229\|Ga0299913_10083510	All Organisms → cellular organisms → Bacteria	3102	Open in IMG/M
3300031422\|Ga0308186_1031588	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	551	Open in IMG/M
3300031423\|Ga0308177_1013950	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	649	Open in IMG/M
3300031423\|Ga0308177_1019481	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	589	Open in IMG/M
3300031547\|Ga0310887_11015436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	530	Open in IMG/M
3300031824\|Ga0307413_11008801	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	714	Open in IMG/M
3300031852\|Ga0307410_10528985	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	974	Open in IMG/M
3300031995\|Ga0307409_102769564	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	518	Open in IMG/M
3300032002\|Ga0307416_101114919	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	894	Open in IMG/M
3300032002\|Ga0307416_101597975	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	757	Open in IMG/M
3300032004\|Ga0307414_10044248	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3039	Open in IMG/M
3300032004\|Ga0307414_10213783	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1578	Open in IMG/M
3300032004\|Ga0307414_10568359	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1013	Open in IMG/M
3300032144\|Ga0315910_10887137	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	695	Open in IMG/M
3300033412\|Ga0310810_10957459	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	740	Open in IMG/M
3300034644\|Ga0370548_021264	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	992	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.00%
Host-Associated	Host-Associated	26.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.00%
Plants	Host-Associated → Plants	26.00%
Aquatic	Environmental → Aquatic	7.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.00%
Freshwater	Environmental → Aquatic → Freshwater	7.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.00%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.00%
Roots	Host-Associated → Plants → Roots	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.00%
Loam	Environmental → Terrestrial → Soil → Loam	11.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.00%
Ice	Environmental → Aquatic → Freshwater → Ice	3.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.00%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.00%
Sand	Environmental → Terrestrial → Soil → Sand	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.00%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.00%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.00%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	3.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.00%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.00%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.00%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.00%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	27.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.00%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.00%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.00%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	3.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.00%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.00%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.00%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.00%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.00%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006972	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025524	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01969040	2088090015	Soil	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVELPDIALLVLNTYGTGIHVGDLIRRVRVAKPGLPVLHIGSTIPHGLPSDVPTLDETFTPDQLLVAVGALIERRRGPRSTGDLRVAFSPRADVGGMRSGQASTTTLANAGRRL
JGI11643J12802_107567123	3300000890	Soil	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVELPDIALLVLNTYGTGIHVGDLIRRVRVAKPGLPVLHIGSTIPHGLPSDVPTLDETFTPDQLLVAVGALIERRRGPRSTGDLRVAFSPRADVGGMRSGRASTTTLANAGRRL*
JGI10216J12902_1040562714	3300000956	Soil	MSSSPYRPRLDGRIVICDYNALLLSVTGLLRMAGYCVFQAYDGHAAEELCGGLPNISLLILNTTGTGIDLGELIQEVRERIPGLPVLHIGPSAPLGIPADVPTISEDFTPDHLLTTVGSLIQQRA*
JGI10216J12902_1118915331	3300000956	Soil	MSHELPVPPSEGRRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCLLLPNIDLLVLNTYGTGIDVSELCRSVRHAKRGLPILHIGSTTPPGLPSDVPTLAEQFTADSLLLTVQGLIEPALRRRDPVQQPAKN
Ga0063455_1000086202	3300004153	Soil	MSAQRSALLSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHNGSAAEELCVELPKISLLVLNTYGTGVEVGGLIRRVRIAKPGMPVLHIGFTIPEGLPADVPTLAETFTPEQLLLAVSALMERRRSSRTAGDEVGIDYSPAPRVVK*
Ga0062595_1019472662	3300004479	Soil	MSHELPVPPSEGRRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCLLLPNIDLLVLNTYGTGIDVSELCRSVRHAKRGLPILHIGSTTPPGLPSDVPTLAEQFTADSLLFTVQGLIEPA
Ga0062592_1005396382	3300004480	Soil	MSSPPPRPRMNGRIVICDYNALLLSVTGLLRMAGYCVFQAYDGHAAEELCRGLPNIGLLILNTVGTGIDLGELIRDVREGVPGLPVLHIGPTTPLGIPADVPTIDEDFTPDQLLMTVKAMIESRA*
Ga0062383_100801831	3300004778	Wetland Sediment	MLVQRPVPSSEGRRIVICDYNALLLSVTGLLRMSNYCVFQAHDGIAAEELCARMPEIALLVLNTHGTGIDVAGLVGRVRLASPGIQVLHIGSTIPDGLPEDVPTLPEVFTPDFLLSTVSRLIERRRNPGLQRDARLAAPSPAEAPADRRRASLVSSRS*
Ga0062383_101854332	3300004778	Wetland Sediment	MLAQRPIPSREGRRIVICDYNALLLSVTGLLRMSGYCVFQAYDGHAVLELCARLPDSELVVLNTYGTGMDTGAPVRQIRETTRGMPVLHIGSSIPEGVPDDVPTIPEGFTADQLLTMVTRLMPAPADMVIDVPVVRPGASVG*
Ga0070680_1004103292	3300005336	Corn Rhizosphere	MPGQRPVPSSEGRRIVICDYNALLLSVTGLLRMSNYCVFQAHDGLAAEELCARMPEISLLVLNTFGTGIDVGGLVRRVRLASPKLQVLHIGSSIPDGLPEDVPSIPERFTSEFLLSTVSALIERRLNPRPAGASYRDACSPAQAFEA*
Ga0070691_103216672	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSHEFPVAPSEGRRIVICDYNALLLSVTGLLRMSGYTVFQAHDGWAAQELCLLLPNIDLLVLNTYGTGIDVSELCRSVRHGKRGLPILHIGSTTPPGLPSDVPTLAEQFTADSLLLTVQGLIEPALRR
Ga0070687_1007673961	3300005343	Switchgrass Rhizosphere	MLPQRPVPSPEGRRIVICDYNALLLSVTGLLRMSGYSVFQAHDGWAAQELCVLLPNIELLVLNTYGTGIDVGQLCRNVRTSKRGLPILHIGANTPVGLPADVPSLEEDFNAETLLS
Ga0070711_1008034111	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLAQRPVPSSEGRRIVICDYNALLLSVTGLLRMSGYCVFQAHDGRAAQELCIKLPEISLLVLNTYGTGIDTGDLVRRVREVNPRLAVLHIGSSIPAGLPDDVPTLAEVFTPDHLLMTVSALIERRVIPRAGGETLKEACSPAQASNE
Ga0070708_1007824241	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSAEHPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHNGRAAEELCLRMPDIALLVLNTYGTGIDVGGLVRRVRMANPGIRVLHIGSSIPDGLPDDVPSIPEVFTPEFLLNTVSTLLDRR
Ga0070706_1014331332	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLAQRPAPSSEGRRIVICDYNALLLSVTGLLRMSGYCVFQAHDGRAAQELCIQLPEISLLVLNTYGTGLDVGDLIREVRAVKPTLAVLHIGSDIPAGLPTDVPTLPEPFTPDELLLAVQALIPAVAPRTPPRLIGVA*
Ga0070697_1008293751	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MFGPRPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHDGLAAEELCARMPEISLLVLNTFGTGIDVGGLVRRVRLASPKLQVLHIGSSIPEGLPEDVPTIPERFTSEFLLSTVSALIERRLIPRPPGGSFGDAYSPAQAFEV*
Ga0070704_1019478501	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VVAGPKVSKMSVERPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHNGRAAEELCLRMPDIALLVLNTYGTGIDVGGLVQRVRAANPEIRVLHIGSSIPDGLPDDVPSIPEVFTPEFLLNTVSTLLDRRVIPRAPSATLRDVFSPAQAPTEMKM*
Ga0070664_1010144892	3300005564	Corn Rhizosphere	MSAQRLVPSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVELPDIVLLVLNTYGTGIHVGDLIRRVRVAKPGLPVLHIGSTIPHGLPDDVPTLDETFTPDQLL
Ga0068852_1028196141	3300005616	Corn Rhizosphere	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVKLPDIALLVLNTYGTGIDVGDLIRRVRAAKPGLPVLHIGSTVPHGLPDDVPTLDETFTPDQLLVAVGALIERRRRARSA
Ga0068863_1017575891	3300005841	Switchgrass Rhizosphere	AIPAVVAGLRVPQMSAEHPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHNGRAAEELCLRMPDIALLVLNTYGTGIDVGGLVRRVRMANPGIRVLHIGSSIPDGLPDDVPSIPEVFTPEFLLNTVSTLLDRRVIPRAPSATLRDVFSPAQAPTEMKM*
Ga0068860_1007860931	3300005843	Switchgrass Rhizosphere	MLPQRPVPSPEGRRIVICDYNALLLSVTGLLRMSGYSVFQAHDGWAAQELCVLLPNIELLVLNTYGTGIDVGQLCRNVRTSKRGLPILHIGANTPVGLPADVPSLEEDFNAETLLSAVGALIESG
Ga0068862_1012208821	3300005844	Switchgrass Rhizosphere	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGPAAEELCVELPDIALLVLNTYGTGIDVGDLIRRVRVAKPGLPVLHIGLTIPHGLPDDVPTLDETFTPDQLLVAVGALIERRRRPRSAGDDLRVAFSPAPALTE*
Ga0068862_1027697262	3300005844	Switchgrass Rhizosphere	MSGQRPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHDGIAAEELCARMPEIALLVLNTFGTGIDVGGLVRRVRAATPTIQILHIGSSIPDGLPEDVPTIPENFTSGFLLSTVSALV
Ga0079222_100141124	3300006755	Agricultural Soil	MLAQRPVPSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGLAAKELCRQLPEISLLILNTYGTGIDVGTLIRDAREAKPGLPVLHIGSSIPEGMPADVPTLDEAFTPDQLLMTVGALMERRLIPRSLPSTTGVS*
Ga0079221_102248752	3300006804	Agricultural Soil	MLAQRPVPSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGLAAKELCRQLPEISLLILNTYGTGIDVGTLIRDAREAKPGLPVLHIGSSIPEGMPSDVPTLDEAFTPDQLLMTVGALIERRLIPRSLPSTTGVS*
Ga0079220_105952391	3300006806	Agricultural Soil	MLAQRPVPSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGLAAKELCRQLPEISLLILNTYGTGIDVGTLIRDAREAKPGLPVLHIGSSIPEGMPADVPTIDEAFTPDLLLITVGALMERRLIPRSLPSTTGVS*
Ga0075421_1003856553	3300006845	Populus Rhizosphere	MSAQRPALGSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGRAAEELCKQMPEIALLVVNTYGTGIDVGDLVRRVRVASPGIQVLHIGSTLPEGLPDDVPSVPEVFTPEFLLQTVSKLIERRVIPRLPGASLRDAFSPAAGPAP*
Ga0075421_1022440421	3300006845	Populus Rhizosphere	EGRRIVICDYNALLLSVTGLLRMANYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGIDVGGLVRRVRLASPEIQVLHIGSTIPEGLPDDVLTISEVFTPQFLLNTVNALIERRLIPRLPGAPWPDAVPPAPALAG*
Ga0075431_1010786971	3300006847	Populus Rhizosphere	MPSQRPAPSSEGRRIVICDYNALLLSVTGLLRMANYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGIDVGGLVRRVRLASPEIQVLHIGSTIPEGLPDDVLTISEVFTPQFLLNTVNALIERRLIPRLPGAPWLDAVPPAPALAG*
Ga0075433_103342112	3300006852	Populus Rhizosphere	MSAEHPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHNGRAAEELCLRMPDIALLVLNTYGTGIDVGGLVQRVRAANPEIRVLHIGSSIPDSLPDDVPTIPEVFTPEFLLNTVSTLLDRRVIPRVPRATLREAFSPAQTPTAMKM*
Ga0075424_1024230681	3300006904	Populus Rhizosphere	MQSQHSGAPSGGRRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAARELCVFLPHIDLLVLNTYGTGIDVGELCRNVRSSKRGLPILHIGSTSPPGLPSDVPTLSEEFTADSLLLTVQ
Ga0075424_1027178661	3300006904	Populus Rhizosphere	ASPKRLLPSRPSSPDLRFPKMSAEHPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHNGRAAEELCLRMPDIALLVLNTYGTGIDVGGLVQRVRAANPEIRVLHIGSSIPDSLPDDVPTIPEVFTPEFLLNTVSTLLDRRVIPRVPRATLREAFSPAQTPTAMKM*
Ga0079219_100078387	3300006954	Agricultural Soil	GTGAAHSEAYLSRDLRGSFTLPHRSISRRGRLSSPDLRIHMSAQRPVPSSEGRRIVICDYNALLLSLTGLLRMSRYCVFQAHDGLAAKELCRQLPEISLLILNTYGTGIDLGTLIRDAREAKPGLPVLHIGSSIPEGMPADVPTLDEAFTPDQLLMTVGALMERRLIPRSLPSTTGVS*
Ga0075518_10456461	3300006972	Arctic Peat Soil	MSPQHPVLSTEGRRIVICDYNALLLSVTGLLRMSGYQVFQAYNGPAVLELCHQLPNIELLILNTYGAGIDTGDLIRKVRATHHDLAVLHIGTCEPDGLPSDVPTLFEGFSSEELLAIVGRLINPMIAIESRPWLVRNQD*
Ga0079218_109873552	3300007004	Agricultural Soil	HTSCQGRPSPPDASSHMSSQRPVPSGQGQRIVICDNNALLLSVTGLLRMSNYCVFQAHDGLAAEELCWRMPKIALLVLNTYGTGIDVGGLVQRVRLASPEIQILHIGSTIPDGMPDDVPTIPEVFTPEFLLDTVRTLIERRLVPRLPDSPLPDTLAPAGASVG*
Ga0105241_108948042	3300009174	Corn Rhizosphere	IVICDYNALLLSVTGLLRMSNYCVFQAHDGLAAEELCARMPEISLLVLNTFGTGIDVGGLVRRVRLASPKLQVLHIGSSIPDGLPEDVPSIPERFTSEFLLSTVSALIERRLNPRPAGASYRDACSPAQAFEA*
Ga0126307_110145401	3300009789	Serpentine Soil	MSGQRPVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGRAAEELCLRLPDIALLVLNTFGTGVDVGGLVGRVQLAAPEIRILHIGATIPDGLPDNVPTIPEEFTAEFLLATVSGLIERRSFPRDPGASLRGALTPAQAFEV*
Ga0105072_11275341	3300009818	Groundwater Sand	MSSQRPVPSSEGRRIVICDYNALLLSVTGLLRMGNYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGIDIGGLVRRVRLASPGIQVLHIGSTIPDGLPDDVLTIPEVFTPEFLLNTVSTLIERRLIP
Ga0126308_103732542	3300010040	Serpentine Soil	MPGQRPVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGRAAEELCLRLPDIALLVLNTFGTGIDVGGLVGRVQLAAPEIRILHIGATIPDGLPDNVPTIPEEFTAEFLLATVSGLIERRSVPRDLGASLRGALTPAQSFEA*
Ga0126311_103287911	3300010045	Serpentine Soil	MSHELPVPPSEGRRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCLLLPNIDLLVLNTYGTGIDVSELCGSVRHAKRGLPILHIGSTTPPGLPSDVPTLAEQFTADTLLLTVQG
Ga0126311_105345102	3300010045	Serpentine Soil	MLHELPVPPSEGKRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCLLLPNIDLLVLNTYGTGIDVSELCQSVRHAKRGLPILHIGSTTPPGLPSDVPTLAEQFTADTLLLTVQG
Ga0134127_107576761	3300010399	Terrestrial Soil	MPGQRPVPSSEGRRIVICDYNALLLSVTGLLRMSNYCVFQAHDGLAAEELCARMPEISLLVLNTFGTGIDVGGLVRRVRLASPKLQVLHIGSSIPDGLPEDVPSIPERFTSEFLLSTVSALIERRLNPRPAGASCRDACSPAQAFEV*
Ga0134121_132707671	3300010401	Terrestrial Soil	MQPQYPGRRIDGRRIVICDYNALLLSVTGLLRMSGYTVFQAHDGWAAQELCVLLPDIELMVLNTYGTGIDVGELCRSVRSSKRNLPILHIGATTPEGLPNDVPTLSEQFTADSLLSTVRTLMGPALLS
Ga0134123_110519691	3300010403	Terrestrial Soil	MLPQRPVPSPEGRRIVICDYNALLLSVTGLLRMSGYSVFQAHDGWAAQELCVLLPNIELLVLNTYGTGIDVGQLCRNVRTSKRGLPILHIGANTPVGLPADVPSLEEDFNAETLL
Ga0138514_1001247571	3300011003	Soil	MSVQRSLPSVEGRRIVICDYNALLLSVTGLLRMTGYCVFQAHDGYAAQELCLELPKIDLLILNTYGTGIDTGDLVRGVRAIKPGFPVLHIGLSEVAGLPADVPTLLEGFTPEELLREVDALLHPKPVLRAAS*
Ga0138514_1001255701	3300011003	Soil	SPDLRTHMLAQRPVPSSEGRRIVICDYNALLLSVTGLLRMSGYCVFQAHDGLAAQELCIQLPDIELLVLNTFGTGIHVGDLIHRARSAKPGLAVLHIGSSIPEGLPPDVPTLPEVFTPDELLTTVSGLLDGELVRGAEGNTLAYAS*
Ga0136623_101565162	3300012045	Polar Desert Sand	MLSQRPVPSSEGRRIVICDYNALLLSVTGLLRIGNYCVFQAHDSCAAEELWGRMPAVDVGDLVRRVRITSPGIQILHIGSSIPDGLPEDVPTIPEVFTPAFLLDTVSTLLERPRIEGVETLSTFSPVSSQP*
Ga0150985_1228028611	3300012212	Avena Fatua Rhizosphere	MLSQRSEPSSEGRRIVVCDYNALLLSITGLLRMSRYCVFQAHDGLAAEELCRQLPEIVLLVVNTYGTGVNVGDLVRRVRLASPGIQVLHIGSTVPPELPDDVPTLPEVFTPEFLLSYVATLLERRRTPRLPGDGLRLAIPLGPPIIA*
Ga0150984_1005708661	3300012469	Avena Fatua Rhizosphere	MLSQRSEPSSEGRRIVVCDYNALLLSITGLLRMNRYCVFQAHDGLAAEELCRQLPEIVLLVVNTYGTGVNVGDLVRRVRLASPGIQVLHIGSTVPPELPDDVPTLPEVFTPEFLLSYVATLLERRRTPRLPGDGLRLAIPLGPPIVA*
Ga0136630_10393403	3300012529	Polar Desert Sand	MLPQRPVPSSEGRRIVICDYNALLLSVTGLLRIGNYCVFQAHDSCAAEELWGRMPAVDVGDLVRRVRITSPGIQILHIGSSIPDGLPEDVPTIPEVFTPAFLLDTVSTLLERPRIEGVETLSTFSPVSSQP*
Ga0137404_119127631	3300012929	Vadose Zone Soil	DYNALLLSVTGLLRMSGYCVFQAHNGLAAQELYIELPEISLLVLNTYGTGIDVGDLIRGARAARRGLPVLHIGSAIPGGLPPDVPTLPEPFTPDELLFAVQALMPAVASSTPRLIGAA*
Ga0164300_101797991	3300012951	Soil	MLTDRLVPSTKGRRIVICDYNALLLSVTGLLRMSDYSVFQAHDGWAAQELCTMLPNIELLVLNTYRTGIDVGELCNNVRARKSGLPSLHIGSTIPDGLPDDVPTLPEDFTAESLLLTVRALVEPEL
Ga0163163_130297221	3300014325	Switchgrass Rhizosphere	MQRQYPDRPINGRRIVICDYNALLLSVTGLLRMSGYTVFQAHDGWAAQELCLLLPNIDLLVLNTYGTGIDVSELCRSVRHGKRGLPILHIGSTTPPGLPSDVPTLAEQFTADSLLLTVQGLIEPALRR
Ga0136617_101159883	3300017789	Polar Desert Sand	MLSQRPVPSSEGRRIVICDYNALLLSVTGLLRIGNYCVFQAHDSCAAEELWGRMPAVDVGDLVRRVRITSPGIQILHIGSSIPDGLPEDVPTIPEVFTPAFLLDTVSTLLERPRIEGVETLSTFSPVSSQP
Ga0190272_104959292	3300018429	Soil	MLPQRPHPSSDGRRIVICDYNALLLSVTGLLRMSGYSVFQAHDGYAAEELCVSLPDIELLVVNTYGTGLDVGVLCRSVRAAKPGLPVLHIGSSIPESLPPDVPTLSEEFSPECLLQTVVAMIDPDVLGGVPVDSAGVGAGAALR
Ga0190272_105049932	3300018429	Soil	MLVQRLPPSNEGQRIVICDYNALLQSVTGLLRMSGYSVFQAHDGYAAQELCLSLPDIKLLVVNTYGTGLEVGELCRNVRAAKPGFPVLHIGSSIPGTLPIDVPTLAEVFTAARLLTTVEAMIDPALMTIGADAALRYGLNAPARTNLLA
Ga0190272_111969262	3300018429	Soil	MPAQRPVPSTEGRRIVVCDHSALLQSVTGLLRLEHYCVFQAHDARAAEELCTRMPDIALLVPNTYGPALAVGELTRRVRLASPRIKILHIGLLVPDGKPDDVSTIPEEFTSEFLVTTVRTLIERRLVPRLPGAHLTDASGRPALGQGDRLRPRA
Ga0190264_122420061	3300019377	Soil	MSSQRPVPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGINVGGLVRRVRLASPEIQVLHIGSTIPEGLPPDVPTIPEVFTPKFLLDTVSTLIDQRSIPRPPGAPW
Ga0210377_105324771	3300021090	Groundwater Sediment	PRHARPPSPDPRTHMPSQHHFPPNEGRRIVICDYNSLLLSVTGLLRMSGYSVFQAYDGHAAQELCVVLPEIELLVVNTYELGIGVGDLIRHVRAVKPGLPILHIGPSIPDGLPLDVLTLSEGFTPDRLLTTVEAMIAARRA
Ga0209817_10783771	3300025524	Arctic Peat Soil	MSPQHPVLSTEGRRIVICDYNALLLSVTGLLRMSGYQVFQAYNGPAVLELCHQLPNIELLILNTYGAGIDTGDLIRKVRATHHDLAVLHIGTCEPDGLPSDVPTLFEGFSSEELLAIVGRLINPMIAIESRPWLVRNQD
Ga0207660_111090152	3300025917	Corn Rhizosphere	MPGQRPVPSSEGRRIVICDYNALLLSVTGLLRMSNYCVFQAHDGLAAEELCARMPEISLLVLNTFGTGIDVGGLVRRVRLASPKLQVLHIGSSIPDGLPEDVPSIPERFTSEFLLSTVSALIERRLNPRPAGASYRDACSPAQAFEA
Ga0207662_107336821	3300025918	Switchgrass Rhizosphere	MLPQRPVPSPEGRRIVICDYNALLLSVTGLLRMSGYSVFQAHDGWAAQELCVLLPNIELLVLNTYGTGIDVGQLCRNVRTSKRGLPILHIGANTPVGLPADVPSLEEDFNAETLLSAVGALI
Ga0207678_111861701	3300026067	Corn Rhizosphere	MPGQRPVPSSEGRRIVICDYNALLLSVTGLLRMSNYCVFQAHDGLAAEELCARMPEISLLVLNTFGTGIDVGGLVRRVRLASPKLQVLHIGSSIPDGLPEDVPSIPERFTSEFLLSTVSALIERRLNPRPAGASYRDACSPA
Ga0209798_101578624	3300027843	Wetland Sediment	MLVQRPVPSSEGRRIVICDYNALLLSVTGLLRMSNYCVFQAHDGIAAEELCARMPEIALLVLNTHGTGIDVAGLVGRVRLASPGIQVLHIGSTIPDGLPEDVPTLPEVFTPDFLLSTVSRLIERRRNPGLQRDARLAAPSPAEAPADRRRASLVSSRS
Ga0209382_116888181	3300027909	Populus Rhizosphere	MPSQRPAPSSEGRRIVICDYNALLLSVTGLLRMANYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGIDVGGLVRRVRLASPEIQVLHIGSTIPEGLPDDVLTISEVFTPQFLLNTVNALIERRLIPRLPGAPWPDAVPPAPALAG
Ga0247822_109165721	3300028592	Soil	MSPAHPFSSSEGRRIVICDYNALLLSVTGLLRMSGYCVFQAHDGLAVEELCSTLPHIDLLVLNTHGSGIEVGELIRRVRVVNPGLPVLHIGSTVPLGLPANVPTLSETFSAGHLLETVAGIVRKPLAIRPVPPAA
Ga0307305_102314092	3300028807	Soil	MLAQHPVPSTEGRRIVVSDHSALLQSVTGLLRLEHYCVFQAHDGRAAEELCARMPDIALLVVNSHGLGLDVGDLIRRVRLASPAIKILHIGSTIPAGKPDNVPTISEEFTAASLVTTVRTLIERRLIPRLPGAMDASGRRMLGQDGRAGPRA
Ga0247825_107283832	3300028812	Soil	MSPAHPFSSSEGRRIVICDYNALLLSVTGLLRMSGYCVFQAHDGLAVEELCSTLPHIDLLVLNTHGSGIEVGELIRRVRVVNPGLPVLHIGSTVPLGLPANVPTLSETFSAGYLLETVAGIVRKPLAIRPVPPAA
Ga0307314_102783721	3300028872	Soil	RVPHRSISRHGRLSSPDPRIHMSAQRPVPSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0299907_106407062	3300030006	Soil	DYNALLLSVTGLLRMDNYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGIDVGGLVRRVRLASPGIQVLHIGSTIPDGLPDDVPTIPEVFTPEFLLNTVSTLIERRLIPRLPGAPWLDAVPAPASAE
Ga0247826_118032771	3300030336	Soil	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVKLPDIALLVLNTYGTGIDVGDLIRRVRAAKPGLPVLHIGSTIPHGLPDDVPTLDETFNPDQLLGAVGTLIDRRRRPRSA
Ga0268386_102577651	3300030619	Soil	MSSQRPVPSSEGRRIVICDYNALLLSVTGLLRMDNYCVFQAHDGLAAEELCVRMPKIALLVLNTYGTGIDVGGLVRRVRLASPGIQVLHIGSTIPDGLPDDVPTIPEVFTPEFLLNTVSTLIERRLISRLPGAPWLDAVPAPASAE
Ga0308155_10121051	3300030987	Soil	QRPVPSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0308183_10140772	3300030988	Soil	AQRPVPSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0308183_11037741	3300030988	Soil	RRISCRARPSSPDLRSHMSGQRPVPSNKGRRIVICDYNALLLSVTGLLRMSAYRVFQAHDGIAAEELCARMPEIALLVLNTYGTGIDVGGLVRRVRTANPAIQVLHIGSSIPDGLPEDVPTIPEQFTSEFLLSTVSALIDRRLIPRPPAGSLWGAFTPSQAFEA
Ga0308183_11570841	3300030988	Soil	MLAQRSVSSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGRAAEELCQRLPEIALLVMNTHGTGIDVGGLVRRVRSASPGIQVLHIGSTVPGGLPDDVPTIGEEFDPVFLLETVSTLIERRRKPRMAGDELRSHVSPARMDPCPVLE
Ga0308178_10094092	3300030990	Soil	PAMAGCLRRTQGSTCRTQRPVPSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0308178_10124271	3300030990	Soil	AKTRLSPPVLRTHMSGQRPVPSSEGRRIVICDNNALLQSVTGLLRISRYCVFQAHDGLAAQELCIQLPKISLLILNTHGTGIDICDLIRDARAAKPALPVLHIGSDIPSGLPADVPTLLEPFTPDDLLLAVKALITRGVLTTSPVLVGAA
Ga0308178_10222462	3300030990	Soil	MSAQRSALFSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGSAAEELCVELPDISLLVLNTYGTGIEVGGLIRRVRIAKPGMPVLHIGLTIPDGLPADVPTLAETFTPEQLLLAVSALMQRRRSSRSTGDELGAELSPAPGGEMTVGP
Ga0308178_10443582	3300030990	Soil	MSGQRPALSSEGRRIVICDYNALLLSVTGLLRMCRYCVFQAHDGHAAAELCERMPDIALLVLNTHGTGIEVGSLVQRVRTANPEMQVLHIGSTIPDGLPADVPTIPEEFTPEFLLQTVSKLIERRAMPRLPGASLSGSLSNAFSPTEAPV
Ga0308184_10027053	3300031095	Soil	MLAQRSVSSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0308181_10368751	3300031099	Soil	QRPVPSSEGRRIVICDYNALLQSVSGLLRMSRYCVFQAHDGLAAQELCIELPEISLLILNTYGTGIDVGDLIRRVRVTKPGLPVLHIGSAIPSGLPADVPTLSESFTPDDLLGVVQALMPAVAPTTLLPLTLTVSA
Ga0308181_10840621	3300031099	Soil	RPSSPDLRSHMSGQRPVPSNKGRRIVICDYNALLLSVTGLLRMSAYRVFQAHDGIAAEELCARMPEIALLVLNTYGTGIDVGGLVRRVRTANPAIQVLHIGSSIPDGLPEDVPTIPEQFTSEFLLSTVSALIDRRLIPRPPAGSLWGAFTPSQAFEA
Ga0308151_10432441	3300031124	Soil	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVKLPDIALLVLNTYGTGIDVGDLIRRVRAAKPGLPVLHIGSTIPHGLPDDVPTLDETFTPDQLLVAVGALIERRRRPRSAGDDLRVAFSPALALAE
Ga0299913_100835104	3300031229	Soil	MSAQRPVPSSEGRRIVICDYNALLLSVTGLLRMDNYCVFQAHDGLAAEELCGRMPKIALLVLNTYGTGIDVGDLVRRVRLASPEIQILHIGSTIPDGLPDDVPTIPEVFTPEFLLDTVRTLIERRLVPRLPGTPRPVALSPAGASAE
Ga0308186_10315881	3300031422	Soil	AMAGCLRRTQGSTCRTQRPVPSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0308177_10139501	3300031423	Soil	ASPAKTRLSPPVLRTHMSGQRPVPSSEGRRIVICDNNALLQSVTGLLRISRYCVFQAHDGLAAQELCIQLPKISLLILNTHGTGIDICDLIRDARAAKPALPVLHIGSDIPSGLPADVPTLLEPFTPDDLLLAVKALITRGVLTTSPVLVGAA
Ga0308177_10194811	3300031423	Soil	SPDPRIHMSAQRPVPSSEGRRIVICDYNALLQSVTGLLRMSRYCVFQAHDGLAAQELCIRLPEISLLVLNTYGTGIEVGDLISNARAGKPGLPVLHIGSDIPVGLPADVPTLPEPFTPDELLLAVQALMPAATPSIPQLIGAV
Ga0310887_110154361	3300031547	Soil	MSAQRSVLSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGHAAEELCVELPDIALLVLNTYGTGIHVGDLIRRVRAAKPGLPVLHIGSTVPHGLPDDVPTLDETFTPDQLLL
Ga0307413_110088011	3300031824	Rhizosphere	MSGQRPIPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHDGHAAEELCVRLPEIALLVLNTYGTGIDVGDLIRRVRIAKPGLPVLHIGSTIPDGMPGDVPTLAEVFTPDHLLLAVSTLIERRQKERIPGDGLRGASSPAAVLVESGT
Ga0307410_105289852	3300031852	Rhizosphere	MLHELPVPPSEGKRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCILLPHINLLVLNTYGTGIDVSELCRTVRHAKRGLPILHIGSTTPPGLPSDVPTLAEQFTADSLLSTVQRLIEPALRRP
Ga0307409_1027695641	3300031995	Rhizosphere	MSGQRPIPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHDGHAAEELCVRLPEIALLVLNTYGTGIDVGDLIRRVRIAKPGLPVLHIGSTIPDGMPGDVPTLAEVFTPDHLLLAVSTLIERRQKERIPGDGLRGASSPAAVLAESGK
Ga0307416_1011149193	3300032002	Rhizosphere	MMTERPVPSTEGCRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCMLLPDIELLVLNTYGTGINVGELCRNVRSSKRGLPILHIGSTVPEGMPDDVPNLPEDFNADGLLLTVEALLKPALMRGGSPSREADQV
Ga0307416_1015979751	3300032002	Rhizosphere	MMTERPVPSSEGRRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAARELCILLPEIELLVLNTYGTGIDVGELCRNVRDSKHGLPILHIGSTVPEGLPADVPTLSENFTADGLLMTVGALIQPALMRVGA
Ga0307414_100442481	3300032004	Rhizosphere	MLHELPVPPSEGKRIVICDYNALLLSVTGLLRMSSYSVFQAHDGWAAQELCILLPDIELLVLNTYRTGIDVGELCNNVRARKPGMTILHIGSTIPDGLPDDVPTLPEDFTAESLLLTVRALVEP
Ga0307414_102137831	3300032004	Rhizosphere	MSGQRPIPSSEGRRIVICDYNALLLSVTGLLRMSDYCVFQAHDGHAAEELCVRLPEIALLVLNTYGTGIDVGDLIRRVRIAKPGLPVLHIGSTIPDGMPGDVPTLAEVFTPDHLLLAVSTLIERRRKERIPGDGLRSASSPAAVLAESGK
Ga0307414_105683591	3300032004	Rhizosphere	MMTERPVPSSEGRRIVICDYNALLLSVTGLLRMSGYAVFQAHDGWAAQELCVLLPEIELLVLNTYGTGIDVGELCRNVRESKHGLPILHIGSTVPPGLPADVPTLSENFTADGLLMTVGA
Ga0315910_108871371	3300032144	Soil	GRRIVICDYNALLLSVAGLLRMSNYCVFQAHDGRAAEELCGRMPAIALLVLNTYGTGIDVGDLVRRVRSASPEIQVLHIGLSIPKGLPEDVLSISEVFTPEFLLDTVSALIERRSVPRSSGVAARNALSPAQASTAVHEA
Ga0310810_109574591	3300033412	Soil	SPDLRIHMLPQRPVPSSEGRRIVICDYNALLLSVTGLLRMSRYCVFQAHDGLAAKELCRQLPEISLLILNTYGTGIDVGTLIRDAREAKPGLPVLHIGSSIPDGMPADVPTLDEAFTPDQLLMTVGALIERRLIPRSLPSTTAVS
Ga0370548_021264_537_947	3300034644	Soil	MLARRPVPCSKGRRIVICDYNALSLSVTGLLRMSGYRVFQAHDGLAAQELCIELPEISLLVLNTYGTGIDVGDLIRGARAARPSLPVLHIGLAIPVALPPDVPTLPEPFTPDEFLCAVQALMPAVASSTPRLIGAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104951

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences