NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104950

Metagenome Family F104950

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104950
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 61 residues
Representative Sequence MNRAFLIILVPAILVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRGAQKA
Number of Associated Samples 56
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 60.00 %
% of genes near scaffold ends (potentially truncated) 21.00 %
% of genes from short scaffolds (< 2000 bps) 74.00 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(35.000 % of family members)
Environment Ontology (ENVO) Unclassified
(55.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(85.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 47.73%    β-sheet: 0.00%    Coil/Unstructured: 52.27%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01242PTPS 31.00
PF04055Radical_SAM 25.00
PF13307Helicase_C_2 14.00
PF13394Fer4_14 8.00
PF06508QueC 6.00
PF13620CarboxypepD_reg 4.00
PF13180PDZ_2 2.00
PF01451LMWPc 1.00
PF09107SelB-wing_3 1.00
PF13432TPR_16 1.00
PF01066CDP-OH_P_transf 1.00
PF13471Transglut_core3 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG07206-pyruvoyl-tetrahydropterin synthaseCoenzyme transport and metabolism [H] 31.00
COG0037tRNA(Ile)-lysidine synthase TilS/MesJTranslation, ribosomal structure and biogenesis [J] 6.00
COG0137Argininosuccinate synthaseAmino acid transport and metabolism [E] 6.00
COG0171NH3-dependent NAD+ synthetaseCoenzyme transport and metabolism [H] 6.00
COG0301Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)Translation, ribosomal structure and biogenesis [J] 6.00
COG0482tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domainTranslation, ribosomal structure and biogenesis [J] 6.00
COG0519GMP synthase, PP-ATPase domain/subunitNucleotide transport and metabolism [F] 6.00
COG06037-cyano-7-deazaguanine synthase (queuosine biosynthesis)Translation, ribosomal structure and biogenesis [J] 6.00
COG0780NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamilyTranslation, ribosomal structure and biogenesis [J] 6.00
COG1606ATP-utilizing enzyme, PP-loop superfamilyGeneral function prediction only [R] 6.00
COG0558Phosphatidylglycerophosphate synthaseLipid transport and metabolism [I] 1.00
COG1183Phosphatidylserine synthaseLipid transport and metabolism [I] 1.00
COG5050sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferasesLipid transport and metabolism [I] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000580|AF_2010_repII_A01DRAFT_1074437All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300002909|JGI25388J43891_1005413All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia2553Open in IMG/M
3300004267|Ga0066396_10053268All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300004633|Ga0066395_10843960All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300005167|Ga0066672_10022338All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3334Open in IMG/M
3300005167|Ga0066672_10208304All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1248Open in IMG/M
3300005167|Ga0066672_10627513All Organisms → cellular organisms → Bacteria → Proteobacteria695Open in IMG/M
3300005171|Ga0066677_10161079All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300005184|Ga0066671_10063538All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1922Open in IMG/M
3300005332|Ga0066388_101175899All Organisms → cellular organisms → Bacteria1308Open in IMG/M
3300005332|Ga0066388_101425950All Organisms → cellular organisms → Bacteria1205Open in IMG/M
3300005332|Ga0066388_102129779All Organisms → cellular organisms → Bacteria1010Open in IMG/M
3300005332|Ga0066388_107845090All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300005439|Ga0070711_101519039All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium584Open in IMG/M
3300005451|Ga0066681_10152371All Organisms → cellular organisms → Bacteria1360Open in IMG/M
3300005561|Ga0066699_11122161All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300005764|Ga0066903_100118784All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3664Open in IMG/M
3300005764|Ga0066903_100259365All Organisms → cellular organisms → Bacteria2695Open in IMG/M
3300005764|Ga0066903_100959772All Organisms → cellular organisms → Bacteria1556Open in IMG/M
3300005764|Ga0066903_101906185All Organisms → cellular organisms → Bacteria1138Open in IMG/M
3300005764|Ga0066903_107303496All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300006755|Ga0079222_10025207All Organisms → cellular organisms → Bacteria2457Open in IMG/M
3300006755|Ga0079222_10156204All Organisms → cellular organisms → Bacteria1305Open in IMG/M
3300006755|Ga0079222_10166103All Organisms → cellular organisms → Bacteria1278Open in IMG/M
3300006755|Ga0079222_10192338All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1217Open in IMG/M
3300006755|Ga0079222_10633281All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300006755|Ga0079222_12195791All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300006794|Ga0066658_10249856All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300006804|Ga0079221_10321802All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300006806|Ga0079220_10469761All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300010046|Ga0126384_10004970All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8102Open in IMG/M
3300010048|Ga0126373_10038234All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4197Open in IMG/M
3300010048|Ga0126373_10076962All Organisms → cellular organisms → Bacteria → Acidobacteria3029Open in IMG/M
3300010048|Ga0126373_10096250All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2728Open in IMG/M
3300010048|Ga0126373_10415786All Organisms → cellular organisms → Bacteria1372Open in IMG/M
3300010048|Ga0126373_12630201All Organisms → cellular organisms → Bacteria → Acidobacteria561Open in IMG/M
3300010321|Ga0134067_10095822All Organisms → cellular organisms → Bacteria → Acidobacteria1010Open in IMG/M
3300010358|Ga0126370_10066484All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2364Open in IMG/M
3300010358|Ga0126370_11544385All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300010358|Ga0126370_11680686All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium610Open in IMG/M
3300010358|Ga0126370_12474933All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300010359|Ga0126376_11048226All Organisms → cellular organisms → Bacteria → Acidobacteria819Open in IMG/M
3300010359|Ga0126376_11607471All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300010360|Ga0126372_10320992All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1373Open in IMG/M
3300010360|Ga0126372_10399855All Organisms → cellular organisms → Bacteria1253Open in IMG/M
3300010360|Ga0126372_10449035All Organisms → cellular organisms → Bacteria → Acidobacteria1194Open in IMG/M
3300010361|Ga0126378_10090856All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2986Open in IMG/M
3300010361|Ga0126378_10589962All Organisms → cellular organisms → Bacteria1226Open in IMG/M
3300010361|Ga0126378_10626204All Organisms → cellular organisms → Bacteria1189Open in IMG/M
3300010361|Ga0126378_10859894All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300010361|Ga0126378_11371262All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300010361|Ga0126378_13431705All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300010376|Ga0126381_100062356All Organisms → cellular organisms → Bacteria → Acidobacteria4614Open in IMG/M
3300010376|Ga0126381_102294463All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300010376|Ga0126381_102527278All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300010398|Ga0126383_10000207All Organisms → cellular organisms → Bacteria30320Open in IMG/M
3300010398|Ga0126383_11358058All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae801Open in IMG/M
3300012206|Ga0137380_10216495All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1733Open in IMG/M
3300012211|Ga0137377_11690400All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium555Open in IMG/M
3300012211|Ga0137377_11926010All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300012948|Ga0126375_10305586All Organisms → cellular organisms → Bacteria1107Open in IMG/M
3300012971|Ga0126369_10015374All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6014Open in IMG/M
3300012971|Ga0126369_10072142All Organisms → cellular organisms → Bacteria → Acidobacteria3033Open in IMG/M
3300012971|Ga0126369_12136149All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300012971|Ga0126369_12605466All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300018431|Ga0066655_10000584All Organisms → cellular organisms → Bacteria12292Open in IMG/M
3300018431|Ga0066655_10532613All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300018433|Ga0066667_10000013All Organisms → cellular organisms → Bacteria38318Open in IMG/M
3300018433|Ga0066667_11110753All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300018482|Ga0066669_11000781All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300021476|Ga0187846_10188339All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300021560|Ga0126371_10159499All Organisms → cellular organisms → Bacteria → Acidobacteria2324Open in IMG/M
3300021560|Ga0126371_10221450All Organisms → cellular organisms → Bacteria → Acidobacteria1996Open in IMG/M
3300021560|Ga0126371_10395080All Organisms → cellular organisms → Bacteria1524Open in IMG/M
3300021560|Ga0126371_11067997All Organisms → cellular organisms → Bacteria947Open in IMG/M
3300026307|Ga0209469_1126973All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300026309|Ga0209055_1186808All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300026312|Ga0209153_1000631All Organisms → cellular organisms → Bacteria → Acidobacteria15112Open in IMG/M
3300026312|Ga0209153_1029602All Organisms → cellular organisms → Bacteria → Acidobacteria1862Open in IMG/M
3300026315|Ga0209686_1068930All Organisms → cellular organisms → Bacteria1261Open in IMG/M
3300026317|Ga0209154_1003789All Organisms → cellular organisms → Bacteria → Acidobacteria8130Open in IMG/M
3300026323|Ga0209472_1071358All Organisms → cellular organisms → Bacteria1432Open in IMG/M
3300026329|Ga0209375_1027401All Organisms → cellular organisms → Bacteria → Acidobacteria3135Open in IMG/M
3300026547|Ga0209156_10000013All Organisms → cellular organisms → Bacteria122728Open in IMG/M
3300027050|Ga0209325_1019212All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300027765|Ga0209073_10043382All Organisms → cellular organisms → Bacteria → Acidobacteria1449Open in IMG/M
3300027787|Ga0209074_10076278All Organisms → cellular organisms → Bacteria → Acidobacteria1085Open in IMG/M
3300027787|Ga0209074_10165418All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300027874|Ga0209465_10216612All Organisms → cellular organisms → Bacteria956Open in IMG/M
3300031543|Ga0318516_10092131All Organisms → cellular organisms → Bacteria → Acidobacteria1703Open in IMG/M
3300031719|Ga0306917_10551208All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae906Open in IMG/M
3300031753|Ga0307477_10005851All Organisms → cellular organisms → Bacteria8723Open in IMG/M
3300031754|Ga0307475_10000466All Organisms → cellular organisms → Bacteria → Acidobacteria24111Open in IMG/M
3300031793|Ga0318548_10492761All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300031796|Ga0318576_10048063All Organisms → cellular organisms → Bacteria → Acidobacteria1839Open in IMG/M
3300031820|Ga0307473_10037001All Organisms → cellular organisms → Bacteria → Acidobacteria2192Open in IMG/M
3300031820|Ga0307473_11258452All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300031962|Ga0307479_10027830All Organisms → cellular organisms → Bacteria → Acidobacteria5376Open in IMG/M
3300032205|Ga0307472_100141118All Organisms → cellular organisms → Bacteria1742Open in IMG/M
3300033289|Ga0310914_11864977All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium506Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil35.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil15.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil12.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil11.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027050Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A01DRAFT_107443713300000580Forest SoilMNRAFLIILVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRERSAKGVK*
JGI25388J43891_100541343300002909Grasslands SoilMNRALVIILVPAILVALGYVLVFSFLGISPGYLRFILGGAVFLAAAYWLWPKRPRGAQKA
Ga0066396_1005326823300004267Tropical Forest SoilLVALGYILVFRFLGIAPGYLRLVLPLVIFLAAAYWLWPRKPRSEMKGRE*
Ga0066395_1084396013300004633Tropical Forest SoilMNRAFLIILIPAILVALGYVLVFRFLGVSAGYLRFILGGVLFLAAAFWLWPRKARSGAKGGE*
Ga0066672_1002233813300005167SoilMNRAFLIILVPAILVATGYVLVFRFLGLSLGYLRFILGGAVFVAAAYWLWPKKEASSIKSVK*
Ga0066672_1020830423300005167SoilMNRALLIILIPAILVALGYVLVFRFLGLSAGYSRLILGGVIFFIAAYWLWPRKARGRAKGGQ*
Ga0066672_1062751313300005167SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFIVGGVVFLAAAFWLWPRKSARSAKGVK*
Ga0066677_1016107923300005171SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFIVGGVVFLAAAFWLWPRKSARSGKGVK*
Ga0066671_1006353833300005184SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFILGGVVFLAAAFWLWPRKSARNAKGVK*
Ga0066388_10117589913300005332Tropical Forest SoilMVSETMNRAFLIILVPAILVALGYILVFHFLGLSPGYLRFILGGVVFLAAAYWLWPRKAPRGTSGVK*
Ga0066388_10142595023300005332Tropical Forest SoilMNRAFLIILIPAILVAIGYVLVFRLLGLSLVYLRFILGGASFLAAAYWLWPKKPRGAQKA
Ga0066388_10212977923300005332Tropical Forest SoilMNRAFLIILIPAILVALGYVLVFRFLGVSAGYSRFILGGVLFLAAAFWLWPRKARSGAKGGE*
Ga0066388_10784509023300005332Tropical Forest SoilLIILIPAILVALGYVLVFRFLGISAGYSRFILASVIFLAAAYWLWPKKAGGKAKGGQ*
Ga0070711_10151903913300005439Corn, Switchgrass And Miscanthus RhizosphereMNRAFLIILVPAILVALGYVLVFRFLGLPLTYVRFILGGVAFLAVAYWLWPRGAARSAKSAE*
Ga0066681_1015237113300005451SoilVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRGAQKA*
Ga0066699_1112216123300005561SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFILGGVVFLAAAFWLWPRKSAR
Ga0066903_10011878423300005764Tropical Forest SoilMNRAFLIILVPAILVATGYVLVFRLLGLSLLYLRFVLGGVVFLAAAYWLWPKKPGGAQKA
Ga0066903_10025936513300005764Tropical Forest SoilMNRAFLIILAPAVLVALGYVFVFRFLGLSPTYFRFIFAGVVFLAAAVWLWPRKGERSAKGVK*
Ga0066903_10095977223300005764Tropical Forest SoilMNRAFLIILVPAILVAVGYVLVFRLLGLHLTYLRFILGGVVFLAAACWLWPRAAARSAKSVK*
Ga0066903_10190618513300005764Tropical Forest SoilMNRAFLIILIPAILVVLGYVLVFRFLGVSAGYSRFILGGVLFLAAAFWLWPRKARSGAKGGE*
Ga0066903_10730349623300005764Tropical Forest SoilMNRAFLIILIPAILVAAGYVLVFHILGLSPSYSRLILGAVIFLAAALLLWPRKTPKEARSKE*
Ga0079222_1002520733300006755Agricultural SoilMNRAFLIILVPAILVAVGYVLVFRLLGLSLVYLRFILGGVVFIGAAYWLWPKKPRGAQKA
Ga0079222_1015620433300006755Agricultural SoilMNRAFLIIVIPAILVALGYILVFRFLGLAPGYVRLIVAGVIFLAAAYWLWPERRRSKVKSGE*
Ga0079222_1016610333300006755Agricultural SoilMNRAFLIILVPAILVALGYVLVFRFLGIPLTYLRFILGGVAFLAVAYWLWPRGAARSAKSAN*
Ga0079222_1019233823300006755Agricultural SoilMNRALVIILIPAILVALGYVLVFRFLGVSAGYSRLILGGVVFLAAAYWLWPKKAGSKAKGGQ*
Ga0079222_1063328123300006755Agricultural SoilLINGWEVMNRAFLIILVPAILVALGYVLVFRFLGLSLVYWPFILGGVAFLGAAYWLWPKRPRGAQKA*
Ga0079222_1219579123300006755Agricultural SoilMTRTLYLATESKAMNRAFFIILVPAILVAVGYVLVFRLLGLSLVYLRFVLGGVVFIAAAYWLWPKKPTGAQKA*
Ga0066658_1024985623300006794SoilLLIILIPAILVALGYVLVFRFLGLSAGYSRLILGGVIFFIAAYWLWPRKARGRAKGGQ*
Ga0079221_1032180223300006804Agricultural SoilMNRAFLIILVPAILVALGYVLVFRLLGLSLVYLRFILGGVIFVGAAYWLWPKKARGTQKA
Ga0079220_1046976123300006806Agricultural SoilMNRALVIILIPAILVALGYVLVFRFLGVSAGYSRLILGGVVFLAAGYWLWPKKAGSKAKGGQ*
Ga0126384_1000497033300010046Tropical Forest SoilMNRAFLIILAPAVLVALGYVFVFRFLGLSPTYFRFIFAGVVFLAAAVWLWPRKGGRSAKGVK*
Ga0126373_1003823443300010048Tropical Forest SoilMNRALLIILVPAILVALGYVLVFRLLGLSPSYLRFILGGAVFLGAAYWLWPKRSRGAEKA
Ga0126373_1007696243300010048Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGIAPGYLRLVLPLVIFLAAAYWLWPRKPRSKMKGRE*
Ga0126373_1009625023300010048Tropical Forest SoilMPPEVGKMNRAFLIIFVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKKREGSAKGVK*
Ga0126373_1041578623300010048Tropical Forest SoilMNRAFLIILVPAILVALGYVLVFRILGLSPGYLRFILGGVVFLAAACWLWPRRGGGAQKA
Ga0126373_1263020123300010048Tropical Forest SoilMNRAFLIILVPGILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKGGRGAQKA
Ga0134067_1009582223300010321Grasslands SoilMNRALVIILVPANLVALGYVLVFRFLGISPGYLRFILGGAVFLAAAYWLWPKRPRGAQKA
Ga0126370_1006648433300010358Tropical Forest SoilMNRAFLIILIPAILVALGYLLVFRFLGIAPGYFRLILPLAIFLAAAYWLWPKRPRNEMKGKE*
Ga0126370_1154438513300010358Tropical Forest SoilMPPEVGKMNRAFLIIFVPAILVALGYVLVFRLLGLSPGYLKFVLGGMVFLAAAYWLWPKRGRGAQKA*
Ga0126370_1168068623300010358Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGIAPGYLRLVLPLVIFLAAAYWLWPRKPRSEMKGRE*
Ga0126370_1247493323300010358Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGITPGYLRLILPPVIFLAAAYWLWPRKPRSEVKGRE*
Ga0126376_1104822623300010359Tropical Forest SoilMNRALLIILVPAILVALGYVLVFRLLGLSPGYLRFILGGAVFLGAAYWLWPKRPRGAQKA
Ga0126376_1160747123300010359Tropical Forest SoilMNRAFLIILVPGILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRGRGAQKA
Ga0126372_1032099213300010360Tropical Forest SoilMNRAFLIILIPAILVALGYVLVFRFLGVSAGYSRFILGGVLFLAAAFWLWPRKARNGAKGRE*
Ga0126372_1039985533300010360Tropical Forest SoilLSAGEAMNRAFLIILIPAILVTLGYVLVFRFLGIAPGYLRLVLPLAIFLAAAYWLWPRKPRSETKGRE*
Ga0126372_1044903533300010360Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGIAPGYLWLVLLLVIFLAAAYWFWPRKPRSKMKGRE*
Ga0126378_1009085633300010361Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGIAPGYLRLVLPLVIFLAAAYWLWPRRPRTETKGRERSS*
Ga0126378_1058996223300010361Tropical Forest SoilMNRAFLIILVPAILVALGYVLVFRLLGLPVTYLRFIFAGVVFLAAAYWLWPKKPSGAQKA
Ga0126378_1062620413300010361Tropical Forest SoilGFVGDGHEPSAVSPGRVALNEIMNRAFLIILVPAILVATGYVLVFRLLGLSLVYLRFILGGVVFLAAAYWLWPKKPKGAQKA*
Ga0126378_1085989423300010361Tropical Forest SoilMNRAFLIILVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRRERSAKGVK*
Ga0126378_1137126223300010361Tropical Forest SoilMNRAFLIILVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRGRGAQKA
Ga0126378_1343170523300010361Tropical Forest SoilMVSETMNRAFLIILVPAILVALGYILVFHFLGLSPGYLRFILGGVVFLPAAYWLWPRKAPRGTSGVK*
Ga0126381_10006235623300010376Tropical Forest SoilMPPEVGKMNRAFLIIFVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRGRGAQKA*
Ga0126381_10229446323300010376Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGIAPGYLRLVLPLVIFLAAAYWLWARKPRSEMKGRE*
Ga0126381_10252727823300010376Tropical Forest SoilMNRAFLIILIPAILVALGYVLVFRLLGLHLTYLRFIFAGGAFVAAAYWLW
Ga0126383_1000020773300010398Tropical Forest SoilMNRAFLIILAPAVLVALGYVFVFRFLGLSPTYFRFIFAGVVFLAAAVWLWPGKGERSAKGVK*
Ga0126383_1135805833300010398Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGITPSYLRFIVGGAIFIAAAYWLWPQRRR
Ga0137380_1021649533300012206Vadose Zone SoilMNRAFLIILVPAILVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRGTQKA
Ga0137377_1169040023300012211Vadose Zone SoilMNRALLIILVPAVLVALGYVLVFRFLGLSPGYLRFLLGGVVFLAAAYWLWPKRPRGA
Ga0137377_1192601013300012211Vadose Zone SoilVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRGTQKA*
Ga0126375_1030558623300012948Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGISPGYLRLVLPLVIFLAAAYWLWPRRPRSDMKGRD*
Ga0126369_1001537433300012971Tropical Forest SoilMNRAFLIILVPAILVAVGYVLVFRLLGLHLTYLRFILGGVVFLAAACWLWPRATARSAKSVK*
Ga0126369_1007214213300012971Tropical Forest SoilPAILVATGYVLVFRLLGLSLLYLRFVLGGVVFLAAAYWLWPKKPGGAQKA*
Ga0126369_1213614923300012971Tropical Forest SoilMNRAFLIILIPAILVTLGYILVFRFLGIAPGYLRLVLPLAIFLAAAYWLWPRKPRNETKGRE*
Ga0126369_1260546613300012971Tropical Forest SoilMNRAFLIILIPAILVALGYILVFRFLGITPSYLRFIVGGAIFIAAAYWLWPQRRRSSVKGRE*
Ga0066655_1000058463300018431Grasslands SoilMNRALVIILVPAILVALGYVLVFRFLGISPGYLRFILGGAVFLAAAYWLWPKRPRGAQKA
Ga0066655_1053261333300018431Grasslands SoilMNRALLIILIPAILVALGYVLVFRLIGLSPRYPRLIFGGLVFFAAAYWLWPRKARSGAKGGE
Ga0066667_10000013103300018433Grasslands SoilMNRALLIILIPAILVALGYVLVFRFLGLSAGYSRLILGGVIFFIAAYWLWPRKARGRAKGGQ
Ga0066667_1111075323300018433Grasslands SoilMNRAFLIILVPAILVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRRAQKA
Ga0066669_1100078113300018482Grasslands SoilMNRAFLIILVPAILVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRGAQKA
Ga0187846_1018833923300021476BiofilmMNRALLIILIPAILVALGYVLVFRFLGFSPSYPRFIAGGAIFFAAAYWLWPRKAGSGAKSRE
Ga0126371_1015949943300021560Tropical Forest SoilVSPGSVTPIETMNRAFLIILIPAILVAIGYVLVFRLLGLSLVYLRFILGGASFLAAAYWLWPKKPRGAQKA
Ga0126371_1022145013300021560Tropical Forest SoilAILVATGYVLVFRLLGLSLLYLRFVLGGVVFLAAAYWLWPKKPGGAQKA
Ga0126371_1039508043300021560Tropical Forest SoilMNRAFLIILIPAILVVLGYVLVFRFLGVSAGYSRFILGGVLFLAAAFWLWPRKARSGAKGGE
Ga0126371_1106799723300021560Tropical Forest SoilMNRAFLIILVPGILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKGGRGAQKGVK
Ga0209469_112697323300026307SoilLVPAILVALGYVLVFRFLGISPGYLRFILGGAVFLAAAYWLWPKRPRGAQKA
Ga0209055_118680823300026309SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFIVGGVVFLAAAFWLWPRKSARSAKGVK
Ga0209153_1000631123300026312SoilMNRAFLIILVPAILVATGYVLVFRFLGLSLGYLRFILGGAVFVAAAYWLWPKKEASSIKSVK
Ga0209153_102960233300026312SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFILGGVVFLAAAFWLWPRKSARNAKGVK
Ga0209686_106893023300026315SoilMNRAFLIILVPAILVALGYVLVFRLLGLSLVYLRFILGGVVFVAAAYWLWPKKPRGPQKA
Ga0209154_100378943300026317SoilMNRAFLIILVPAILVALGYVMVFRFLGLAPTYTRFIVGGVVFLAAAFWLWPRKSARSGKGVK
Ga0209472_107135833300026323SoilGPRCKMNRALVIILVPAILVALGYVLVFRFLGISPGYLRFILGGAVFLAAAYWLWPKRPRGAQKA
Ga0209375_102740133300026329SoilMNRALLIILIPAILVALGYVLVFRLIGLSPGYPRLILGGLVFFAAAYWLWPRKARSGAKGGE
Ga0209156_10000013183300026547SoilMNRALLIILIPAILVALGYVLVFRFLGLSVGYSRLILGGVIFFIAAYWLWPRKARGRAKGGQ
Ga0209325_101921223300027050Forest SoilMNRALLIILVPAILVASGYVLVFRLLGLSPGYLRFILGGAVFLGAAYWLWPKRPRGAQKA
Ga0209073_1004338223300027765Agricultural SoilMNRAFLIILVPAILVALGYVLVFRFLGLSLVYWPFILGGVAFLGAAYWLWPKRPRGAQKA
Ga0209074_1007627833300027787Agricultural SoilMNRAFLIIVIPAILVALGYILVFRFLGLAPGYVRLIVAGVIFLAAAYWLW
Ga0209074_1016541813300027787Agricultural SoilMNRAFLIILVPAILVAVGYVLVFRLLGLSLVYLRFILGGVVFVGAAYWLWPKKPRGTQKA
Ga0209465_1021661213300027874Tropical Forest SoilETMNRAFLIILVPAILVATGYVRVFRLLGLSLLYLRFVLGGVVFLAAAYWLWPKKPGGAQKA
Ga0318516_1009213133300031543SoilKMNRALLIILVPAILVALGYVLVFRLLGLSPGYLRFILGGAVFLGAAYWLWPKGPRGAQK
Ga0306917_1055120823300031719SoilMNRAFLIIFVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRGRGAQKA
Ga0307477_1000585113300031753Hardwood Forest SoilMNRALVIILVPAILVALGYVLVFRFLGISTGYLRFILGGAVFLAAAYWLWPKKPRGAQKA
Ga0307475_1000046683300031754Hardwood Forest SoilMNRAFLIILVPAILVALGYVLVFRLLGLSPGYLRFILGGAVFLAAACWLWPKKGRGAQKA
Ga0318548_1049276123300031793SoilHKMNRALLIILVPAILVALGYVLVFRLLGLSPGYLRFILGGAVFLGAAYWLWPKGPRGAQKA
Ga0318576_1004806313300031796SoilLLIILVPAILVALGYVLVFRLLGLSPGYLRFILGGAVFLGAAYWLWPKGPRGAQKA
Ga0307473_1003700133300031820Hardwood Forest SoilMNRAFLIILVPAILVALGYVLVFRFLGFPLTYVRFILGGVAFLAVAYWLWPRGAARSAKSAK
Ga0307473_1125845213300031820Hardwood Forest SoilMNRALVIILVPAILVALGYVLVFRFLGISTGYLRFILGGAVFLAAAYWLWPKRPRGAQKA
Ga0307479_1002783053300031962Hardwood Forest SoilMNRALLIIAIPAILVALGYVLVFRFMGFSPSYPRFIVGGAIFFAAAYWLWPRKAGSGVKCRE
Ga0307472_10014111833300032205Hardwood Forest SoilMNRAFLIILVPAILVALGYVLVFRFLGLPLTYVRFILGGVAFLAVAYWLWPRGAARSAKSAK
Ga0310914_1186497723300033289SoilMNRAFLIIFVPAILVALGYVLVFRLLGLSPGYLKFVLGGVVFLAAAYWLWPKRGR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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