NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104925

Metagenome Family F104925

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104925
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence LLVPGDHFGLPNHIRFGFGEELHHFQEALAETERGLKRVFTD
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.00 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 85.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(28.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.43%    β-sheet: 0.00%    Coil/Unstructured: 68.57%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF02423OCD_Mu_crystall 48.00
PF00171Aldedh 25.00
PF01384PHO4 13.00
PF01865PhoU_div 4.00
PF13520AA_permease_2 2.00
PF08309LVIVD 1.00
PF01842ACT 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2423Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin familyAmino acid transport and metabolism [E] 48.00
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 25.00
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 25.00
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 25.00
COG0306Phosphate/sulfate permeaseInorganic ion transport and metabolism [P] 13.00
COG1392Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 familyInorganic ion transport and metabolism [P] 4.00
COG5276Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domainFunction unknown [S] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.00 %
UnclassifiedrootN/A3.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002560|JGI25383J37093_10100571All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300004281|Ga0066397_10088455All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300005166|Ga0066674_10029468All Organisms → cellular organisms → Bacteria2419Open in IMG/M
3300005174|Ga0066680_10210626All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300005177|Ga0066690_10077043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2099Open in IMG/M
3300005178|Ga0066688_10163434All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1400Open in IMG/M
3300005178|Ga0066688_10538026All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300005406|Ga0070703_10402256All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300005436|Ga0070713_102265066All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria526Open in IMG/M
3300005467|Ga0070706_101230707All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300005536|Ga0070697_100584939All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300005540|Ga0066697_10123938All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300005545|Ga0070695_100125946All Organisms → cellular organisms → Bacteria1759Open in IMG/M
3300005555|Ga0066692_10591895All Organisms → cellular organisms → Bacteria → Proteobacteria697Open in IMG/M
3300005556|Ga0066707_10702138All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300005557|Ga0066704_10201438All Organisms → cellular organisms → Bacteria → Proteobacteria1346Open in IMG/M
3300005557|Ga0066704_10755890All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300005568|Ga0066703_10267444All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300006031|Ga0066651_10002805All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis6289Open in IMG/M
3300006032|Ga0066696_10549410All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300006755|Ga0079222_10842720All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300006791|Ga0066653_10714564All Organisms → cellular organisms → Bacteria → Proteobacteria519Open in IMG/M
3300006847|Ga0075431_101573946All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300006854|Ga0075425_102744263All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300006854|Ga0075425_102864981All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300006865|Ga0073934_10225590All Organisms → cellular organisms → Bacteria → Proteobacteria1251Open in IMG/M
3300007258|Ga0099793_10582521All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300007265|Ga0099794_10433566All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300009012|Ga0066710_103253412All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium622Open in IMG/M
3300009088|Ga0099830_11382822All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300009089|Ga0099828_11017929All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300009100|Ga0075418_12989127All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300009137|Ga0066709_101011504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1218Open in IMG/M
3300009137|Ga0066709_102844594All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300009137|Ga0066709_103232723All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium594Open in IMG/M
3300009156|Ga0111538_12605203All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300010301|Ga0134070_10166504All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes796Open in IMG/M
3300010303|Ga0134082_10229985All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300010304|Ga0134088_10255138All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300010321|Ga0134067_10001045All Organisms → cellular organisms → Bacteria5970Open in IMG/M
3300010322|Ga0134084_10094027All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300010362|Ga0126377_12558866All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300012200|Ga0137382_10438258All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300012203|Ga0137399_11009799All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300012206|Ga0137380_10685018All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300012208|Ga0137376_10027649All Organisms → cellular organisms → Bacteria4465Open in IMG/M
3300012208|Ga0137376_10173760All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae1859Open in IMG/M
3300012208|Ga0137376_10393010All Organisms → cellular organisms → Bacteria1204Open in IMG/M
3300012208|Ga0137376_11325807All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300012209|Ga0137379_10234880All Organisms → cellular organisms → Bacteria1747Open in IMG/M
3300012210|Ga0137378_11882234All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300012211|Ga0137377_10072048All Organisms → cellular organisms → Bacteria3237Open in IMG/M
3300012211|Ga0137377_10075282All Organisms → cellular organisms → Bacteria3167Open in IMG/M
3300012285|Ga0137370_10023286All Organisms → cellular organisms → Bacteria3138Open in IMG/M
3300012354|Ga0137366_10202765All Organisms → cellular organisms → Bacteria1481Open in IMG/M
3300012354|Ga0137366_10366417All Organisms → cellular organisms → Bacteria1053Open in IMG/M
3300012356|Ga0137371_10360524All Organisms → cellular organisms → Bacteria1129Open in IMG/M
3300012359|Ga0137385_11120684All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300012360|Ga0137375_10525517All Organisms → cellular organisms → Bacteria1001Open in IMG/M
3300012361|Ga0137360_10107115All Organisms → cellular organisms → Bacteria2151Open in IMG/M
3300012944|Ga0137410_12104861All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300012972|Ga0134077_10114493All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300012977|Ga0134087_10002327All Organisms → cellular organisms → Bacteria5671Open in IMG/M
3300014308|Ga0075354_1080290All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300015054|Ga0137420_1412690All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300015359|Ga0134085_10074977All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1380Open in IMG/M
3300015359|Ga0134085_10542078All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300017656|Ga0134112_10473663All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300017657|Ga0134074_1256397Not Available630Open in IMG/M
3300017659|Ga0134083_10541420All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300018060|Ga0187765_11166952All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes538Open in IMG/M
3300018084|Ga0184629_10065745All Organisms → cellular organisms → Bacteria1698Open in IMG/M
3300018431|Ga0066655_10168156All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300018482|Ga0066669_10205006All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae1514Open in IMG/M
3300019789|Ga0137408_1301458Not Available912Open in IMG/M
3300021363|Ga0193699_10493392All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300026285|Ga0209438_1003423All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae5359Open in IMG/M
3300026300|Ga0209027_1251619All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300026307|Ga0209469_1150234All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300026313|Ga0209761_1106021All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1394Open in IMG/M
3300026318|Ga0209471_1247782All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300026328|Ga0209802_1304898All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300026333|Ga0209158_1045720All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1814Open in IMG/M
3300026527|Ga0209059_1171166All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300026528|Ga0209378_1256006All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300026529|Ga0209806_1251385All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300026532|Ga0209160_1239400All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes622Open in IMG/M
3300026536|Ga0209058_1174188All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300027643|Ga0209076_1052058Not Available1159Open in IMG/M
3300027646|Ga0209466_1085066All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300027903|Ga0209488_10931715All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300027948|Ga0209858_1029001All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium527Open in IMG/M
3300028536|Ga0137415_11193723All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300028720|Ga0307317_10225077All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300031199|Ga0307495_10001741All Organisms → cellular organisms → Bacteria2309Open in IMG/M
3300031547|Ga0310887_10909773All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300031820|Ga0307473_11235212All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300032205|Ga0307472_100032171All Organisms → cellular organisms → Bacteria3058Open in IMG/M
3300033412|Ga0310810_10046543All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae5294Open in IMG/M
3300033417|Ga0214471_10079945All Organisms → cellular organisms → Bacteria2680Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil28.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil23.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil12.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil10.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment1.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.00%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.00%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cmEnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014308Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027948Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028720Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25383J37093_1010057113300002560Grasslands SoilAEHSVLLVPGEHFGLPQHIRFGYGEELQHLQEALAETERALRRVFAD*
Ga0066397_1008845523300004281Tropical Forest SoilSVLLCPGEHFGMPGFLRFGYGGELQHFQEALAETERGLRCLFSD*
Ga0066674_1002946813300005166SoilHDVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRAFAD*
Ga0066680_1021062633300005174SoilPGDHFGLPNHLRFGYGEELHHLKDALAETERGLRRVFTD*
Ga0066690_1007704313300005177SoilVRAEHSVLLVPGEHFGLPNHIRFGYGEELHHFQEALAETERGLKRVFAD*
Ga0066688_1016343413300005178SoilVRAEHGVLLVPGDHFGLPNHIRFGYGEELHHFQEALAETERGLKRVLAD*
Ga0066688_1053802623300005178SoilGVLLCPGDHFGMPGFLRFGFGGDLQHFQEALAETERGLRRLFSD*
Ga0070703_1040225613300005406Corn, Switchgrass And Miscanthus RhizospherePGDHFGMPGFLRFGYGGELQQFQEALAETERGLRRLFSD*
Ga0070713_10226506623300005436Corn, Switchgrass And Miscanthus RhizosphereLVPGEHFGLPHYLRLGFGEELHHFREALGETERGLKRAFAD*
Ga0070706_10123070713300005467Corn, Switchgrass And Miscanthus RhizosphereDHSVLLVPGDHFGLPNHIRFGFGEELEHFQEALAETERGLKRVFAD*
Ga0070697_10058493913300005536Corn, Switchgrass And Miscanthus RhizosphereQHSVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0066697_1012393833300005540SoilDHFGLPHHIRFGFGEEVHQFEAALAETERGLKRVFTD*
Ga0070695_10012594633300005545Corn, Switchgrass And Miscanthus RhizosphereSVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD*
Ga0066692_1059189513300005555SoilPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0066707_1070213823300005556SoilLRAEHSVLLVPGEHFGVPGHLRFGYGEELQHFQEALAETERGLKRMFAD*
Ga0066704_1020143813300005557SoilAEYSVLLVPGEHFGVPGHLRFGYGDELQHFQQALAETARGLKRIFTD*
Ga0066704_1075589023300005557SoilPGEHFGLPHHIRFGYGEELQHLQEALAETERALRRVFAD*
Ga0066703_1026744413300005568SoilHSVLLVPGDHFGLPNHIRFGFGDELHHFREALAETERGLKRVFAD*
Ga0066651_1000280573300006031SoilGDHFGLPRHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0066696_1054941023300006032SoilAEYDVLLVPGDHFGLPNHLRFGYGEELHHFKDALAETERGLRRVFTD*
Ga0079222_1084272023300006755Agricultural SoilAQHSVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD*
Ga0066653_1071456413300006791SoilRGAIPAPDVVEKLRAQHSVLLCAGDHFGMPGFLRFGFGDELQHFQEALAETERGLRRLFSD*
Ga0075431_10157394623300006847Populus RhizosphereRAQHSVLLCPGDHFGSPGFLRFGYGDELSHFQEALAETERGLRRLFSD*
Ga0075425_10274426323300006854Populus RhizosphereGDHFGMPGFLRFGYGGELQHFQEALAESERGLRRLFSD*
Ga0075425_10286498123300006854Populus RhizosphereVLLVPGDHFGLPNHIRFGFGEELQHFREALAETERGLKRVFAD*
Ga0073934_1022559033300006865Hot Spring SedimentFELPHHLRFGYGQALAGLQAALAETERGLRRVFAD*
Ga0099793_1058252113300007258Vadose Zone SoilEHFGLPQHIRFGYGNELSELQAALAETEHGLKRLFTD*
Ga0099794_1043356623300007265Vadose Zone SoilLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0066710_10325341223300009012Grasslands SoilRAEHSVLLVPGEHFGVPGHLRFGYGDELQHFQEALAETERGLKRIFAD
Ga0099830_1138282213300009088Vadose Zone SoilGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0099828_1101792913300009089Vadose Zone SoilGVLLVPGDHFGLPNHIRFGYGEELHHFQEALAETERGLKRVLAD*
Ga0075418_1298912723300009100Populus RhizosphereLLVPGDQFGMPSYIRFGFGGDMQHFQEALAETERGLRRLFTD*
Ga0066709_10101150433300009137Grasslands SoilGLPNHIRFGYGEELHHFQEALAETERGLKRVFAD*
Ga0066709_10284459413300009137Grasslands SoilGLPNHLRFGYGEELQHLQEALAETERGLRRVFAD*
Ga0066709_10323272323300009137Grasslands SoilVLLVPGEHFGVPGHLRFGYGDELQHFQEALAETERGLKRIFAD*
Ga0111538_1260520313300009156Populus RhizosphereQHSVLLVPGEHFGMPSYLRFGFGDDLQHFQEALAETERALRRLFTD*
Ga0134070_1016650413300010301Grasslands SoilPGDHFGMPGFLRFGYGEDLKHLQEALAETERGLRRLFTD*
Ga0134082_1022998523300010303Grasslands SoilLVPGDHFGLPNHLRFGYGEELHHLKDALAETERGLRRVFTD*
Ga0134088_1025513813300010304Grasslands SoilHSVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0134067_1000104573300010321Grasslands SoilVPGDHFGLPNHIRFGFGEELPHFQEALAETERGLKRVFAD*
Ga0134084_1009402723300010322Grasslands SoilGLPHHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0126377_1255886623300010362Tropical Forest SoilEKLRAQHSVLLCPGEHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0137382_1043825823300012200Vadose Zone SoilQHGVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0137399_1100979913300012203Vadose Zone SoilFGLPHHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0137380_1068501823300012206Vadose Zone SoilVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0137376_1002764963300012208Vadose Zone SoilFGLPNHIRFGYGEELHHFQEALAETERGLKRVFAD*
Ga0137376_1017376013300012208Vadose Zone SoilSVLLCPGDHFGTPGFLRLGFGGELQHFQEALAETERGLRRLFSD*
Ga0137376_1039301023300012208Vadose Zone SoilDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFAD*
Ga0137376_1132580713300012208Vadose Zone SoilRAEHGVLLVPGDHFGLPRHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0137379_1023488033300012209Vadose Zone SoilLLCPGDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFTD*
Ga0137378_1188223413300012210Vadose Zone SoilGDHFGMPHHIRFGFGEELHHLQEALAETERGLKRVFID*
Ga0137377_1007204853300012211Vadose Zone SoilAEHNVLLVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0137377_1007528243300012211Vadose Zone SoilVLLVPGEHFGLPQHIRFGFGEELHHFEAALAETERGLKRVFTD*
Ga0137370_1002328643300012285Vadose Zone SoilCPGDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFAD*
Ga0137366_1020276513300012354Vadose Zone SoilVLLCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFSD*
Ga0137366_1036641723300012354Vadose Zone SoilLLVPGDHFGLPNHIRFGFGEELHHFQEALAETERGLKRVFTD*
Ga0137371_1036052413300012356Vadose Zone SoilEHSVLLCPGEHFGLPGYLRFGYGNELSELQEALAETERGLKRVLAD*
Ga0137385_1112068413300012359Vadose Zone SoilSVLLVPGDHFGLPRHLRLGFGEELHHFREALGETERGLKRAFAD*
Ga0137375_1052551723300012360Vadose Zone SoilDHFGLPNYIRFGYGEELHHLQEALAETERGVKQVFAD*
Ga0137360_1010711513300012361Vadose Zone SoilSVLLCPGDHFGMPGFLRFGYGEDLQHFQEALAETERGLRRLFSD*
Ga0137410_1210486123300012944Vadose Zone SoilFGMPHHLRFGFGNELAVLQAALGETERGLRRVMTD*
Ga0134077_1011449323300012972Grasslands SoilVLLVPGDHFGLPNHIRFGFGEELGHFQEALAETERGLKRAFAD*
Ga0134087_1000232713300012977Grasslands SoilRMRAEHSVLLVPGEHFGLPNHIRFGYGEELHHLQEALAETERGLKRVFAD*
Ga0075354_108029023300014308Natural And Restored WetlandsEHDVLLVSGEHFGMPGYIRFGIGGDPAELAAALAETERGLRRLFSD*
Ga0137420_141269023300015054Vadose Zone SoilVPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD*
Ga0134085_1007497713300015359Grasslands SoilSVLLVPGEHFGLPNHLRFGYGEELQHLQEALAETERALRRVFAD*
Ga0134085_1054207813300015359Grasslands SoilEHSVLLVPGEHFGLPNHLRFGYGEELQHLQEALAETERGLRRVFAD*
Ga0134112_1047366313300017656Grasslands SoilEHSVLLVPGDHFGLPNHIRFGVGEELDHFQEALAETERGLKRVFTD
Ga0134074_125639723300017657Grasslands SoilMRAEHDVLLVPGEHFGLPNHIRFGFGEELHHFQKALAETERGLKRVFTD
Ga0134083_1054142013300017659Grasslands SoilKMRADHSVLLVPGDHFGLPNHIRFGFGEELRHFQEALAETERGLKRVFAD
Ga0187765_1116695223300018060Tropical PeatlandVPGDHFGAPGYLRFGYGGELEHLRQGLAETEKGLREMFTHPD
Ga0184629_1006574513300018084Groundwater SedimentRAQHSVLLCPGDHFGTPGFLRFGYGGELKQFQDALAETERGLRRLFSD
Ga0066655_1016815623300018431Grasslands SoilGANRRAPPGVLRGPGGHCGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD
Ga0066669_1020500613300018482Grasslands SoilLCPGDHFGMPGFLRFGYGDELQHFQEALAETERGLRRLFSD
Ga0137408_130145813300019789Vadose Zone SoilFGTPGFLRLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0193699_1049339223300021363SoilHSVLLVPGEHFGMPGYLRFGYGEGLQHLQEALAETERGLKRLFS
Ga0209438_100342373300026285Grasslands SoilGDHFGAPGFLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0209027_125161913300026300Grasslands SoilEHSVLLCPGEHFGLPGYLRFGYGNELSELQAALAETERGLKRLLGD
Ga0209469_115023423300026307SoilPGDHFGLPNHIRFGFGEELHHFREALAETERGLKRVFAD
Ga0209761_110602113300026313Grasslands SoilVPGEHFGLPQHIRFGYGEELQHLQEALAETERALRRVFAD
Ga0209471_124778223300026318SoilDHFGLPHHIRFGFGEEVRHFEAALAETERGLKRVFTD
Ga0209802_130489823300026328SoilAEYDVLLVPGDHFGLPNHLRLGYGEELHHLKDALAETERGLRRVFTD
Ga0209158_104572033300026333SoilAEHSVLLVPGEHFGLPQHIRFGYGEELQHLQEALAETERALRRVFAD
Ga0209059_117116623300026527SoilPGDHFGLPRHIRFGFGEELHHFEAALAETERGLKRVFTD
Ga0209378_125600623300026528SoilCPGDHFGMPGFLRFGYGGELQHFQEALAETERGLRRLFTD
Ga0209806_125138523300026529SoilQHGVLLCPGDHFGMPGFLRFGFGGDLQHFQEALAETERGLRRLFSD
Ga0209160_123940023300026532SoilLLVQGEHFGVPGHLRFGYGDELQHFQQALAETARGLKRIFTD
Ga0209058_117418813300026536SoilKMRANHSVLLVPGDHFGLPNHIRFGFGEELRHFQEALAETERGLKRVFAD
Ga0209076_105205823300027643Vadose Zone SoilFGMPGFLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0209466_108506623300027646Tropical Forest SoilSVLLCPGEHFGMPGFLRFGYGGELQHFQEALAETERGLRCLFSD
Ga0209488_1093171523300027903Vadose Zone SoilDQFGMPSFLRFGFGGDLQHFEEALAETERALRRLFTD
Ga0209858_102900123300027948Groundwater SandDHFGTPGFLRFGYGGELKHFQEALAETERGLRRLFSD
Ga0137415_1119372313300028536Vadose Zone SoilFGMPGFLRFGFGSELQHFQEALAETERGLRRLFSD
Ga0307317_1022507723300028720SoilVRAQHSVLLVPGEHFGMPSFLRFGFGDALQHFQEALAETERALRRLFTD
Ga0307495_1000174143300031199SoilCAGDHFGMPGFLRFGFGDELQHFQEALAETERGLRRLFSD
Ga0310887_1090977313300031547SoilVLLVPGEHFGMPNYLRIGYGDELQHLQEALAETERGLKRILT
Ga0307473_1123521213300031820Hardwood Forest SoilSVLLCPGEHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFSD
Ga0307472_10003217153300032205Hardwood Forest SoilAEHSVLLVPGDHFGLPYHLRLGFGEELRHFREALGETERGLKRAFAD
Ga0310810_1004654313300033412SoilCPGDHFGMPGFLRFGFGDELKHFQEALAETERGLRRLFSD
Ga0214471_1007994513300033417SoilVLLVPGDHFGMPGFLRFGFGGELQHFQEALAETERGLRRLFSD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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