Metagenome / Metatranscriptome Family F104894

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F104894
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	77 residues
Representative Sequence	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCADCGKASEYSKLVTQIGRESLKQRKTRLSGERADRVRAGLD
Number of Associated Samples	79
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	31.00 %
% of genes near scaffold ends (potentially truncated)	24.00 %
% of genes from short scaffolds (< 2000 bps)	87.00 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (88.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.000 % of family members)
Environment Ontology (ENVO)	Unclassified (33.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.62% β-sheet: 14.29% Coil/Unstructured: 58.10%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF03950	tRNA-synt_1c_C	35.00
PF04392	ABC_sub_bind	12.00
PF07690	MFS_1	10.00
PF13924	Lipocalin_5	2.00
PF07719	TPR_2	2.00
PF07969	Amidohydro_3	2.00
PF12276	DUF3617	1.00
PF03401	TctC	1.00
PF05239	PRC	1.00
PF07908	Obsolete Pfam Family	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	35.00
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	12.00
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.00 %
Unclassified	root	N/A	12.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.00 %
Unclassified	root	N/A	12.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.00 %
Unclassified	root	N/A	12.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	87.00 %
Unclassified	root	N/A	12.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	67.00 %
Unclassified	root	N/A	12.00 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	55.00 %
Unclassified	root	N/A	12.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	55.00 %
Unclassified	root	N/A	12.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002906\|JGI25614J43888_10089428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	838	Open in IMG/M
3300002907\|JGI25613J43889_10000865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7399	Open in IMG/M
3300003319\|soilL2_10049260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1403	Open in IMG/M
3300003319\|soilL2_10175933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1099	Open in IMG/M
3300003324\|soilH2_10291251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1053	Open in IMG/M
3300005167\|Ga0066672_10582538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	725	Open in IMG/M
3300005171\|Ga0066677_10098350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1546	Open in IMG/M
3300005171\|Ga0066677_10153260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1264	Open in IMG/M
3300005175\|Ga0066673_10117015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1450	Open in IMG/M
3300005187\|Ga0066675_11312870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	533	Open in IMG/M
3300005330\|Ga0070690_101626785	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300005437\|Ga0070710_10953326	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300005439\|Ga0070711_100563654	Not Available	946	Open in IMG/M
3300005440\|Ga0070705_100276266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1192	Open in IMG/M
3300005440\|Ga0070705_100817141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	743	Open in IMG/M
3300005441\|Ga0070700_101909608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	513	Open in IMG/M
3300005444\|Ga0070694_100151033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1696	Open in IMG/M
3300005446\|Ga0066686_10295069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1101	Open in IMG/M
3300005447\|Ga0066689_10147492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1397	Open in IMG/M
3300005451\|Ga0066681_10735242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	599	Open in IMG/M
3300005526\|Ga0073909_10138502	Not Available	1003	Open in IMG/M
3300005537\|Ga0070730_10040784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3424	Open in IMG/M
3300005552\|Ga0066701_10809784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	558	Open in IMG/M
3300005552\|Ga0066701_10960157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	506	Open in IMG/M
3300005555\|Ga0066692_10331587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	965	Open in IMG/M
3300005569\|Ga0066705_10009506	All Organisms → cellular organisms → Bacteria → Proteobacteria	4545	Open in IMG/M
3300005569\|Ga0066705_10369748	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300005576\|Ga0066708_10539176	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005576\|Ga0066708_10617792	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300006031\|Ga0066651_10124659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1326	Open in IMG/M
3300006031\|Ga0066651_10255310	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300006791\|Ga0066653_10246671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	910	Open in IMG/M
3300006854\|Ga0075425_100707974	Not Available	1156	Open in IMG/M
3300006854\|Ga0075425_102502343	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300006903\|Ga0075426_11278573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	557	Open in IMG/M
3300006953\|Ga0074063_13406767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	543	Open in IMG/M
3300009012\|Ga0066710_100130629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3447	Open in IMG/M
3300009089\|Ga0099828_10427578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1194	Open in IMG/M
3300009090\|Ga0099827_11559792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	575	Open in IMG/M
3300009137\|Ga0066709_100710696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1446	Open in IMG/M
3300010046\|Ga0126384_10259293	Not Available	1409	Open in IMG/M
3300010337\|Ga0134062_10339590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	721	Open in IMG/M
3300010364\|Ga0134066_10455374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	501	Open in IMG/M
3300010401\|Ga0134121_10000890	All Organisms → cellular organisms → Bacteria → Proteobacteria	30517	Open in IMG/M
3300010401\|Ga0134121_10648580	All Organisms → cellular organisms → Bacteria → Proteobacteria	994	Open in IMG/M
3300010401\|Ga0134121_11418782	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300010401\|Ga0134121_12101736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	599	Open in IMG/M
3300011269\|Ga0137392_10437169	Not Available	1086	Open in IMG/M
3300011271\|Ga0137393_10523174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1017	Open in IMG/M
3300012202\|Ga0137363_11476084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	571	Open in IMG/M
3300012203\|Ga0137399_11561460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	548	Open in IMG/M
3300012212\|Ga0150985_112283973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	516	Open in IMG/M
3300012361\|Ga0137360_10470552	Not Available	1067	Open in IMG/M
3300012362\|Ga0137361_10939363	Not Available	783	Open in IMG/M
3300012469\|Ga0150984_101430123	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300012469\|Ga0150984_103221865	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300012685\|Ga0137397_10839552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	681	Open in IMG/M
3300012685\|Ga0137397_10858384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	673	Open in IMG/M
3300012917\|Ga0137395_10617876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	783	Open in IMG/M
3300012918\|Ga0137396_10131710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1810	Open in IMG/M
3300012922\|Ga0137394_10140304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2053	Open in IMG/M
3300012922\|Ga0137394_10176992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1819	Open in IMG/M
3300012922\|Ga0137394_10212858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1652	Open in IMG/M
3300012922\|Ga0137394_10515298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1015	Open in IMG/M
3300012927\|Ga0137416_10640786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	929	Open in IMG/M
3300012929\|Ga0137404_10000047	All Organisms → cellular organisms → Bacteria → Proteobacteria	61621	Open in IMG/M
3300012944\|Ga0137410_10182283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1617	Open in IMG/M
3300012944\|Ga0137410_11627805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	566	Open in IMG/M
3300015079\|Ga0167657_1000823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6945	Open in IMG/M
3300015164\|Ga0167652_1056066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	724	Open in IMG/M
3300015241\|Ga0137418_10080729	All Organisms → cellular organisms → Bacteria → Proteobacteria	2949	Open in IMG/M
3300015245\|Ga0137409_10247285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1586	Open in IMG/M
3300015359\|Ga0134085_10154261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	975	Open in IMG/M
3300017657\|Ga0134074_1269013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	616	Open in IMG/M
3300018433\|Ga0066667_10033435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2923	Open in IMG/M
3300018468\|Ga0066662_11534427	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300018482\|Ga0066669_11606916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	594	Open in IMG/M
3300018482\|Ga0066669_12296468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	514	Open in IMG/M
3300020581\|Ga0210399_10548939	Not Available	958	Open in IMG/M
3300021953\|Ga0213880_10036653	Not Available	1157	Open in IMG/M
3300026075\|Ga0207708_11286733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	640	Open in IMG/M
3300026315\|Ga0209686_1072082	All Organisms → cellular organisms → Bacteria → Proteobacteria	1229	Open in IMG/M
3300026319\|Ga0209647_1001438	All Organisms → cellular organisms → Bacteria → Proteobacteria	20364	Open in IMG/M
3300026320\|Ga0209131_1021139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3901	Open in IMG/M
3300026320\|Ga0209131_1070155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1917	Open in IMG/M
3300026482\|Ga0257172_1091963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	557	Open in IMG/M
3300026538\|Ga0209056_10441703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	752	Open in IMG/M
3300026542\|Ga0209805_1179199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	941	Open in IMG/M
3300026552\|Ga0209577_10236817	Not Available	1383	Open in IMG/M
3300027903\|Ga0209488_10011686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6431	Open in IMG/M
3300028536\|Ga0137415_10417476	Not Available	1147	Open in IMG/M
3300031366\|Ga0307506_10100914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	946	Open in IMG/M
3300031716\|Ga0310813_11099002	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300031720\|Ga0307469_10342876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1251	Open in IMG/M
3300031720\|Ga0307469_11126099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	739	Open in IMG/M
3300032180\|Ga0307471_101133181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	948	Open in IMG/M
3300032180\|Ga0307471_103718501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	540	Open in IMG/M
3300032205\|Ga0307472_102153401	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300032770\|Ga0335085_10403664	Not Available	1585	Open in IMG/M
3300033412\|Ga0310810_11407643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.00%
Host-Associated	Host-Associated	6.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.00%
Plants	Host-Associated → Plants	6.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.00%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.00%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.00%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.00%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	3.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.00%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.00%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.00%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.00%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.00%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015079	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface)	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25614J43888_100894281	3300002906	Grasslands Soil	RMEFRIGQISAKCPGCGATQFKIPEDEHSGPRMNYVCAACGKMAEYAKLVMQIGREALKQRKTRLSGERADRVRAGLD*
JGI25613J43889_100008654	3300002907	Grasslands Soil	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCAECGKASEYSKLVTQIGRESLKQRKTRLSGERADRVRAGLD*
soilL2_100492601	3300003319	Sugarcane Root And Bulk Soil	MEFRVGRISAKCPKCGASQFKIPHAEQSGPRMNYVCAACGQMQQYAKLIMQIGRQVMQQRRERLSGERADRVLKDQHA*
soilL2_101759333	3300003319	Sugarcane Root And Bulk Soil	MEFRVGSISAKCPKCGATKFRIPKEEHSGPRMNYECEICGQPTEYAKLITQIGRQAMAQRKERLSGERAERVRNGLT*
soilH2_102912512	3300003324	Sugarcane Root And Bulk Soil	MEFRVGSISAKCPKCGATKFKIPRDEHSGPRMNYECEVCGQPTQYAKLITQIGREAMTQRKVRLSGERATRVRNGVS*
Ga0066672_105825382	3300005167	Soil	MEFRVGQIIAKCPGCGGGRFKIPEHEHSGPRMNYVCADCGKASEYSKLVTQIGREAMRQRKTRLSGERADRVAREQEA*
Ga0066677_100983502	3300005171	Soil	MEFRVGQINAKCPGCGGTQFKIPEDEHSGPRMNYLCAGCGKTVEYAKLIMQIGREALRKRKTRLSGERADRVRAGLS*
Ga0066677_101532603	3300005171	Soil	MEFRVGQISAKCPKCGATKFRIPREEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRVRNGVS*
Ga0066673_101170152	3300005175	Soil	MKFRVGQISAKCPKCGTSEFKIPQEEHSGPLMLYQCAGCGQGTEYAKLVRQIGREVIAQRNVRLSGERADRVRNGVS*
Ga0066675_113128701	3300005187	Soil	MQFRVGQIIAKCPGCGGMQFKIPEHEHSGPRMSYVCADCGKASEYSKLIHQIGRAALQQRKARLSGERADRVTKEQQA*
Ga0070690_1016267852	3300005330	Switchgrass Rhizosphere	PKCGGTEFKIPLEEHSGPLMRYLCAGCGQGTEYAKLVKQIGREVMAKRSVRLSGERANRVRSGVS*
Ga0070710_109533262	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRVGSISAKCPKCGATKFKIPRDEHSGPRMNYECEVCGQPTQYAKLITQIGREAMSQRKVRLSGARADRVRNGVN*
Ga0070711_1005636542	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRVGSISAKCPKCGATKFKIPRDEHSGPRMNYECEICGQATQYAKLITQIGREVMQKRKDRLSGERADRVRNGVN*
Ga0070705_1002762662	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRIGRISAKCPKCGASQFKIPRDEHSGPRMNYVCAGCGQTSQYSKLVSQIGRQVLQQRKERLTSGRADSLVDTRA*
Ga0070705_1008171411	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRVGQISAKCPKCGATKFRIPRDEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRVRNGVS*
Ga0070700_1019096081	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRIGRISAKCPKCGATQFKIPRDEHSGPRMNYVCAGCGQTSQYSKLVSQIGRQVLQQRKERL
Ga0070694_1001510331	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRIGRISAKCPKCGATQFKIPRDEHSGPRMNYVCAGCGQTSQYSKLVSQIGRQVLQQRKERLTSGRADSLVDTRA*
Ga0066686_102950691	3300005446	Soil	YARRMEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT*
Ga0066689_101474924	3300005447	Soil	MEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT*
Ga0066681_107352421	3300005451	Soil	GQISAKCPGCGGTKFKIPQDEHSGPRMNYVCTDCGKASEYALLVTQIGRESLKQRKTRLSGERADRVRAGLS*
Ga0073909_101385021	3300005526	Surface Soil	MKFRVGQISAKCPKCGATEFQIPREEHSGPLMLYQCSGCGQGTEYAKLVRQIGREVMAQRTVRLSGERADRVRSG
Ga0070730_100407844	3300005537	Surface Soil	MEFRVGQISARCPKCQATQFKIPVDEHSGPRMNYQCVGCGQATEYAKLVRQIGREVMAQRNVRLSGERADRVRSGLS*
Ga0066701_108097842	3300005552	Soil	MEFRVGQIIAKCPGCGGTRFKIPEHEHSGPRMSYVCADCGKSSEYSKLVTQIGREAMRQRKTRLSGERA
Ga0066701_109601572	3300005552	Soil	TSLDSRRQSHYAGAMEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT*
Ga0066692_103315872	3300005555	Soil	MEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREAMRQRKTRLSGERADRVVRDNQT*
Ga0066705_100095064	3300005569	Soil	MEFRVGQINARCPGCGGTQFKIPEDEHSGPRMNYLCAACGKTVEYAKLIMQIGREALRKRKTRLSGERADRVRAGLS*
Ga0066705_103697481	3300005569	Soil	MEFRVGQINAKCPGCGGTQFKIPEDEHSGPRMNYVCATCGKTEEYAKLITQIGREAMSQRKVRLSGERATRVRNGVS*
Ga0066708_105391762	3300005576	Soil	QIIAKCPGCGGMQFKIPEHEHSGPRMSYVCADCGKASEYSKLIHQIGRAALQQRKARLSGERADRVTKEQQA*
Ga0066708_106177922	3300005576	Soil	MEFRVGQINAKCPGCGGTQFKIPEDEHSGPRMNYLCAACGKTVEYAKLIMQIGREALRKRKTRLSGERADRVRAGLS*
Ga0066651_101246592	3300006031	Soil	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCTDCGKASEYALLVTQIGRESLKQRKTRLSGERADRVRAGLS*
Ga0066651_102553102	3300006031	Soil	MKFRVGQISAKCPKCGTTEFKIPQEEHSGPLMLYQCAGCGQGTEYAKLVRQIGREVIAQRNVRLSGERADRVRNGVS*
Ga0066653_102466712	3300006791	Soil	MRFRVGQISAKCPKCGTSEFNIPQEEHSGPLMLYQCAGCGQGTEYAKLVRQIGREVIAQRNVRLSGERADRVRSGVS*
Ga0075425_1007079741	3300006854	Populus Rhizosphere	MEFRVGQISAKCPKCGATKFRIPRDEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLFFERATRVRNGVS*
Ga0075425_1025023431	3300006854	Populus Rhizosphere	PKCGATKFRIPRDEHSGPRMNYECELCGQPTQYVKLITQIGREAMSQRKVRLSGERATRVRNGVS*
Ga0075426_112785732	3300006903	Populus Rhizosphere	MEFRVGSISAKCPKCGATKFKIPRDEHSGPRMNYECEICGQPTQYAKLVTQIGREVMAQRKVRLSGERATRVRNGVS*
Ga0074063_134067671	3300006953	Soil	VFRYADCMEFRVGQISAKCPKCGATEFQIPRDEHSGPRMNYVCVGCGQASQYSKLISQIGRLALQKRKERLSGERADRVLADTRA*
Ga0066710_1001306293	3300009012	Grasslands Soil	MEFRVGQILAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT
Ga0099828_104275781	3300009089	Vadose Zone Soil	MEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVMQIGREALRKRKTRLSGERADRVLREQT*
Ga0099827_115597921	3300009090	Vadose Zone Soil	MEFRVGQIIAKCPGCGGTRFKIPEHEHSGPRMSYVCADCGKSSEYSKLVTQIGRAALQQRKERLSGE
Ga0066709_1007106962	3300009137	Grasslands Soil	MEFRVGQISAKCPKCGATQFKIPVEEHSGPRMNYQCAGCGQTTEYAKLVKQIGRQVIAQRNVRLSGERADRVRSGVS*
Ga0126384_102592933	3300010046	Tropical Forest Soil	MEFRVGHISAKCPKCGATQFKIPRAEDSGPRMNYECTGCGQATQYAKLITQIGREVMQQRKQRLSGERADRVRAGVN*
Ga0134062_103395902	3300010337	Grasslands Soil	MEFRVGQISAKCPKCGTTEVKIWQEEHSGPLMLYQCAGCGQRTEYAKLVRQIGREVTAQRNVRLSGERADRVRS
Ga0134066_104553741	3300010364	Grasslands Soil	MEFRVGQISAKCPKCGATKFRIPRDEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRRQLELDF
Ga0134121_100008902	3300010401	Terrestrial Soil	MEFRVGQISAKCPKCGATKFRIPRDEHSGPRMNYECEVCGQPTQYARLITQIGREVMQQRKVRLSGERATRVRSGVS*
Ga0134121_106485801	3300010401	Terrestrial Soil	KFRVGQVIAKCPKCGGTEFKIPLEEHSGPLMRYQCAGCGQGTEYAKLVKQIGREVMAKRSVRLSGERANRVRSGVS*
Ga0134121_114187822	3300010401	Terrestrial Soil	ARMEFRVGSISAKCPKCGATKFKIPRDEHSGPRMNYECEICGQATQYAKLITQIGREVMQKRKDRLSGERADRVRNGVN*
Ga0134121_121017362	3300010401	Terrestrial Soil	MEFRIGRISAKCPKCGATQFKIPRDEHSGPRMNYVCAGCGQTSQYSKLVSQIGRQVLQQRKERLTSGRADSLVDSRA*
Ga0137392_104371692	3300011269	Vadose Zone Soil	MQFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT*
Ga0137393_105231744	3300011271	Vadose Zone Soil	MEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVMQIGREALRQRKTRLSGERADRVLREQT*
Ga0137363_114760842	3300012202	Vadose Zone Soil	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCADCGKASEYSKLVTQIGRESLKQRKTRLSGERADRVRAGLD*
Ga0137399_115614601	3300012203	Vadose Zone Soil	MEFRVGQIIAKCPGCGGGRFKIPEHEHSGPRMSYVCADCGKASEYSKLVTQIGREALRQRKTRLSGERADRVAREQEA*
Ga0150985_1122839731	3300012212	Avena Fatua Rhizosphere	ISAKCPKCGATKFRIPRDEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRVRNGVS*
Ga0137360_104705522	3300012361	Vadose Zone Soil	MECRVGQIIAKCPGCGGGRFKIPEHEHSGPRMNYVCADCGKASEYSKLVTQIGREAMRQRKTRLSGERADRVAREQEA*
Ga0137361_109393631	3300012362	Vadose Zone Soil	MEFRVGQIIAKCPGCGGGRFKIPEHEHSGPRMNYVCADCGKASEYSKLVTQIGREAMRQRKTRLSGERADRVAREQEA
Ga0150984_1014301232	3300012469	Avena Fatua Rhizosphere	QIIAQCPKCGGTEFKIPLEEHSGPLMRYQCAGCGAGTEYAKLVKQIGRQVMEKRSVRLSGERANRVRSGVS*
Ga0150984_1032218652	3300012469	Avena Fatua Rhizosphere	MKFRVGQVSAKCPKCSAIEFKIPQEEHSGPLMRYQCTGCGASTEYAKLVKQIGREVTAKRNERLSGERADRVRSGVS*
Ga0137397_108395522	3300012685	Vadose Zone Soil	MEFRIGQLSAKCPKCGATQFKIPRDEHSGPRMNYVCAECGQASQYSKLISQIGRQALQQRKERLSGERADRAPSDTRS
Ga0137397_108583842	3300012685	Vadose Zone Soil	MEFRIGQISAKCPQCGATEFKIPREEHSGPRMNYVCAGCGQASQYSKLMMQIGRQVLQQRKERLSGGRADPAGDTRA*
Ga0137395_106178763	3300012917	Vadose Zone Soil	MEFRIGQISAKCPGCGATQFKIPEDEHSGPRMNYVCAACGKMAEYAKLVMQIGREALKQRKTRLSGERADRVRAGLD*
Ga0137396_101317102	3300012918	Vadose Zone Soil	MEFRVGQITAKCPGCGGGRFKIPEHEHSGPRMSYVCADCGKASEYSKLVTQIGREALRQRKTRLSGERADRVAREQEA*
Ga0137394_101403042	3300012922	Vadose Zone Soil	MEFRVGQISAKCPKCGATKFRIPREEHSGPRMNYECEVCGQPTPYAKLITQIGREVMSKRKVRLSGERANRVRNGVS*
Ga0137394_101769922	3300012922	Vadose Zone Soil	MEFRVGEILAKCPGCGGTDFKPPETEHSGPYMSYFCTSCGGATIYAKLITQIGRETLRRKKERLSGEPQKQTDSLPSFLRRS*
Ga0137394_102128581	3300012922	Vadose Zone Soil	KKCARRQYFLFSRVQFHYARRMEFRVGQIIAKCPGCGGTRFKIPADEHSGPRMSYVCADCGKASEYSKLVTQIGREALRQRKTRLSGERADRVLREQT*
Ga0137394_105152983	3300012922	Vadose Zone Soil	MEFRVGQIIAKCPGCGGTRFKIPEHEHSGPRMSYVCADCGKASEYSKLVTQIGREALRQRKTRLSGERADRVAGEQEA*
Ga0137416_106407862	3300012927	Vadose Zone Soil	MEFRIGQISAKCPNCGATEFKIPREEHSGPRMNYVCAGCGQASQYSKLMMQIGRQVLQQRKERLSGGRADPAGDTRA*
Ga0137404_1000004733	3300012929	Vadose Zone Soil	MEFRVGRISAKCPKCGATQFKIPVEEHSGPRMNYQCAACGHATEYAKLVRQIGRQVIAQRNVRLSGERADRVRSGLS*
Ga0137410_101822833	3300012944	Vadose Zone Soil	MEFRIGQISAKCPKCGATQFKIPREEHSGPRMNYVCAGCGQASQYSKLMMQIGRQVLQQRKERLSGGRADPVGDTRA*
Ga0137410_116278052	3300012944	Vadose Zone Soil	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCAGCGNASEYSKLVTQIGRESLKQRKTRLSGERADRVRAGLD*
Ga0167657_10008232	3300015079	Glacier Forefield Soil	MKFRVGQISAKCPKCRATEFKIPREEHSGPLMLYQCAGCGQGTEYAKLVRQIGREVMAQRTVRLSGERADRVRSGLS*
Ga0167652_10560662	3300015164	Glacier Forefield Soil	MEFRVGQIQAKCPGCGGTQFKIPEVEHSGPRMNYVCAACGKTAEYAKLVTQIGREALKQRKTRLSGERADRVRSGLS*
Ga0137418_100807294	3300015241	Vadose Zone Soil	MEFRIGQISAKCPNCGATEFKIPREEHSGPRMNYVCAGCGQASQYSKLMTQIGRQVLQQRKERLSGGRADPAGDTRA*
Ga0137409_102472853	3300015245	Vadose Zone Soil	MEFRVGQIIAKCPGCGGGRFKIPEHEHSGPRMSYVCADCGKASEYSKLVTQIGREALRQRKTRLSGERADRVAGEQEA*
Ga0134085_101542614	3300015359	Grasslands Soil	CPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT*
Ga0134074_12690132	3300017657	Grasslands Soil	MQFRVGQIIAKCPGCGGAQFKIPEHEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT
Ga0066667_100334353	3300018433	Grasslands Soil	MEFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT
Ga0066662_115344272	3300018468	Grasslands Soil	MEFRVGSISAKCPKCGATEFKIPRDEHSSPRMNYECEICGQSTQYAKLVTQIGREVMAQRKVRLSGECASRDKNGIS
Ga0066669_116069162	3300018482	Grasslands Soil	MEFRVGQISAKCPKCGATKFRIPRDEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRVRNGVS
Ga0066669_122964681	3300018482	Grasslands Soil	NTSLDSRRQSHYAGAMQFRVGQIIAKCPGCGGMQFKIPEHEHSGPRMSYVCADCGKASEYSKLIHQIGRAALQQRKARLSGERADRVTKEQEA
Ga0210399_105489392	3300020581	Soil	MEFRVGQISAKCPKCGATQFKIPREEHSGPRMNYQCAGCGQATQYARLVTQIGREVIAQRNARLSG
Ga0213880_100366532	3300021953	Exposed Rock	MEFRVGSISAKCPKCGATKFKIPRDEHSGPRMNYECEICGQATQYAKLITQIGRESMQKRKDRLSGERADRVRSGVN
Ga0207708_112867331	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MEFRIGRISAKCPKCGATQFKIPRDEHSGPRMNYVCAGCGQTSQYSKLVSQIGRQVLQQRKERLTSGRADSLVDTRA
Ga0209686_10720822	3300026315	Soil	MEFRVGQINAKCPGCGGTQFKIPEDEHSGPRMNYLCAGCGKTVEYAKLIMQIGREALRKRKTRLSGERADRVRAGLS
Ga0209647_100143812	3300026319	Grasslands Soil	MEFRIGQISAKCPGCGATQFKIPEDEHSGPRMNYVCAACGKMAEYAKLVMQIGREALKQRKTRLSGERADRVRAGLD
Ga0209131_10211396	3300026320	Grasslands Soil	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCAECGKASEYSKLVTQIGRESLKQRKTRLSGERADRVRAGLD
Ga0209131_10701552	3300026320	Grasslands Soil	MEFRVGQISAKCPKCGATQFQIPREEHSGPRMTYQCAGCGQGTEYAKLVRQIGRQVITQRNVRLSGERADRVRSGVS
Ga0257172_10919632	3300026482	Soil	MEFRVGQIIAKCPGCGGTRFKIPEHEHSGPRMNYVCADCGKASEYSKLVMQIGREALRQRKTRLSGDRADRVAREQEA
Ga0209056_104417032	3300026538	Soil	MQFRVGQIIAKCPGCGGMQFKIPENEHSGPRMSYVCAGCGKASEYSKLVLQIGREALRQRKTRLSGERADRVLREQT
Ga0209805_11791992	3300026542	Soil	MEFRVGQISAKCPKCGATKFRIPREEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRVRNGVS
Ga0209577_102368171	3300026552	Soil	MEFRVGQINAKCPGCGGTQFKIPEDEHSGPRMNYLCAGCGKTVEYAKLIMQIGREALRKRKTRLSGERADRVRAGL
Ga0209488_100116861	3300027903	Vadose Zone Soil	MEFRVGQISAKCPGCGGTKFKIPQDEHSGPRMNYVCADCGKASEYSKLVTQIGRESLKQRKTRLSGERADRVRAGLD
Ga0137415_104174762	3300028536	Vadose Zone Soil	MEFRIGQISAKCPNCGATEFKIPREEHSGPRMNYVCAGCGQASQYSKLMMQIGRQVLQQRKERLSGGRADPAGDTRA
Ga0307506_101009142	3300031366	Soil	MKFRVGQISAKCPKCGATEFKIPLDEHSGPRMLYQCAGCGAGTEYARLVKQIGREVMAKRTVRLSGERADRVRSGVS
Ga0310813_110990021	3300031716	Soil	MEFRVGQISAKCPKCGATKFKIPRDEHSGPRMNYECEICGQATQYAKLITQIGREVMQKRKDRLSGERADRVRNGVN
Ga0307469_103428762	3300031720	Hardwood Forest Soil	MEFRIGRISAKCPKCGATQFKIPRDEHSGPRMNYVCAGCGQTSQYSKLVSQIGRQVLQQRKERLTAGRIDPAVDTHA
Ga0307469_111260991	3300031720	Hardwood Forest Soil	MEFRVGQISAKCPKCGATQFKIPVEEHSGPRMSYQCAGCGHATEYAKLVKQIGRQVMGQRSVRLSGERADRVRAGLS
Ga0307471_1011331812	3300032180	Hardwood Forest Soil	MEFRVGSISAKCPKCGATKFRIPREEHSGPRMNYECEVCGQPTQYAKLVTQIGREVMAKRKVRLSGERANRVRNGVN
Ga0307471_1037185012	3300032180	Hardwood Forest Soil	MEFRVGQISAKCPKCGATQFKIPVEEHSGPRMSYQCAGCGHATEYAKLVKQIGRQVIAQRNVRLSGERADRVRSGVS
Ga0307472_1021534011	3300032205	Hardwood Forest Soil	MKFRVGQISAKCPKCGATEFKIAQEEHSGPLMLYQCAGCGQGTEYAKLVRQIGREAMAQRSVRLSGERADRVRAGVS
Ga0335085_104036642	3300032770	Soil	MEFRVGSISAKCPKCGASKFNIPPEEHSGPRMHYECTACGQSTQYAKLITQIGREVMAQRKQRLSGERADRVRDGVS
Ga0310810_114076431	3300033412	Soil	MEFRVGQISAKCPKCGATKFRIPRDEHSGPRMNYECELCGQPTQYAKLITQIGREAMSQRKVRLSGERATRVRNSVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104894

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences