Metagenome / Metatranscriptome Family F104893

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104893
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	96 residues
Representative Sequence	IGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Number of Associated Samples	66
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.00 %
% of genes near scaffold ends (potentially truncated)	95.00 %
% of genes from short scaffolds (< 2000 bps)	94.00 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (32.000 % of family members)
Environment Ontology (ENVO)	Unclassified (34.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.62% β-sheet: 10.64% Coil/Unstructured: 45.74%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00482	T2SSF	18.00
PF07811	TadE	3.00
PF02583	Trns_repr_metal	1.00
PF13020	NOV_C	1.00
PF00437	T2SSE	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.00 %
Unclassified	root	N/A	39.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.00 %
Unclassified	root	N/A	39.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.00 %
Unclassified	root	N/A	39.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	48.00 %
Unclassified	root	N/A	39.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	48.00 %
Unclassified	root	N/A	39.00 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	48.00 %
Unclassified	root	N/A	39.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	48.00 %
Unclassified	root	N/A	39.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001538\|A10PFW1_12095808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	748	Open in IMG/M
3300002914\|JGI25617J43924_10122214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	916	Open in IMG/M
3300002914\|JGI25617J43924_10130732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	877	Open in IMG/M
3300005166\|Ga0066674_10285887	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005172\|Ga0066683_10809362	Not Available	544	Open in IMG/M
3300005332\|Ga0066388_105826986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	623	Open in IMG/M
3300005445\|Ga0070708_100116369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2461	Open in IMG/M
3300005445\|Ga0070708_100663447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	982	Open in IMG/M
3300005445\|Ga0070708_101654185	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005446\|Ga0066686_10706526	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300005450\|Ga0066682_10909548	Not Available	524	Open in IMG/M
3300005467\|Ga0070706_100001970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	21158	Open in IMG/M
3300005467\|Ga0070706_100230150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1730	Open in IMG/M
3300005467\|Ga0070706_100287524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1534	Open in IMG/M
3300005467\|Ga0070706_100556736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1066	Open in IMG/M
3300005467\|Ga0070706_100695857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	943	Open in IMG/M
3300005467\|Ga0070706_101511568	Not Available	613	Open in IMG/M
3300005468\|Ga0070707_100130271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2446	Open in IMG/M
3300005468\|Ga0070707_100680462	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300005468\|Ga0070707_100857549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	872	Open in IMG/M
3300005468\|Ga0070707_100861094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	870	Open in IMG/M
3300005468\|Ga0070707_100888420	Not Available	855	Open in IMG/M
3300005468\|Ga0070707_101072059	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005468\|Ga0070707_101829406	Not Available	574	Open in IMG/M
3300005471\|Ga0070698_101955792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	539	Open in IMG/M
3300005518\|Ga0070699_100083398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2788	Open in IMG/M
3300005518\|Ga0070699_100641078	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005518\|Ga0070699_101432941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	633	Open in IMG/M
3300005537\|Ga0070730_10135789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1678	Open in IMG/M
3300005540\|Ga0066697_10693292	Not Available	558	Open in IMG/M
3300005545\|Ga0070695_101619376	Not Available	541	Open in IMG/M
3300005555\|Ga0066692_10894682	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005557\|Ga0066704_10543745	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005568\|Ga0066703_10739868	Not Available	564	Open in IMG/M
3300005569\|Ga0066705_10542382	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300006028\|Ga0070717_10679911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	935	Open in IMG/M
3300006047\|Ga0075024_100322573	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300006057\|Ga0075026_100377829	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300006791\|Ga0066653_10304930	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300006854\|Ga0075425_101389179	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300006914\|Ga0075436_101083693	Not Available	603	Open in IMG/M
3300007255\|Ga0099791_10364215	Not Available	693	Open in IMG/M
3300007265\|Ga0099794_10651725	Not Available	559	Open in IMG/M
3300009012\|Ga0066710_101619722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	991	Open in IMG/M
3300009012\|Ga0066710_103727606	Not Available	573	Open in IMG/M
3300009012\|Ga0066710_104894548	Not Available	501	Open in IMG/M
3300009088\|Ga0099830_10340020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1205	Open in IMG/M
3300009090\|Ga0099827_11478980	Not Available	591	Open in IMG/M
3300009143\|Ga0099792_11216013	Not Available	512	Open in IMG/M
3300010329\|Ga0134111_10265748	Not Available	708	Open in IMG/M
3300010336\|Ga0134071_10239831	Not Available	901	Open in IMG/M
3300010880\|Ga0126350_10842515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1914	Open in IMG/M
3300011270\|Ga0137391_10202180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1727	Open in IMG/M
3300011271\|Ga0137393_10529244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1011	Open in IMG/M
3300011271\|Ga0137393_10663772	Not Available	893	Open in IMG/M
3300011998\|Ga0120114_1068916	Not Available	685	Open in IMG/M
3300012010\|Ga0120118_1045305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1120	Open in IMG/M
3300012189\|Ga0137388_10618761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1007	Open in IMG/M
3300012189\|Ga0137388_10694067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	945	Open in IMG/M
3300012189\|Ga0137388_11256922	Not Available	679	Open in IMG/M
3300012189\|Ga0137388_11321350	Not Available	660	Open in IMG/M
3300012199\|Ga0137383_10417818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	983	Open in IMG/M
3300012200\|Ga0137382_10215564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1322	Open in IMG/M
3300012203\|Ga0137399_10643543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	892	Open in IMG/M
3300012204\|Ga0137374_10408067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1078	Open in IMG/M
3300012205\|Ga0137362_11201883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	642	Open in IMG/M
3300012209\|Ga0137379_10515758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1103	Open in IMG/M
3300012362\|Ga0137361_10471274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1153	Open in IMG/M
3300012362\|Ga0137361_10931943	Not Available	787	Open in IMG/M
3300012362\|Ga0137361_11740807	Not Available	542	Open in IMG/M
3300012917\|Ga0137395_10178634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1468	Open in IMG/M
3300012917\|Ga0137395_10919716	Not Available	631	Open in IMG/M
3300012927\|Ga0137416_11670529	Not Available	581	Open in IMG/M
3300012975\|Ga0134110_10588764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M
3300013501\|Ga0120154_1028752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1398	Open in IMG/M
3300013758\|Ga0120147_1029969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1010	Open in IMG/M
3300013765\|Ga0120172_1084291	Not Available	782	Open in IMG/M
3300014058\|Ga0120149_1068686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	917	Open in IMG/M
3300021086\|Ga0179596_10255226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	867	Open in IMG/M
3300021479\|Ga0210410_10341976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1342	Open in IMG/M
3300025910\|Ga0207684_10097941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2504	Open in IMG/M
3300025910\|Ga0207684_10460868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1091	Open in IMG/M
3300025910\|Ga0207684_10585505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	953	Open in IMG/M
3300025910\|Ga0207684_10669418	Not Available	883	Open in IMG/M
3300025910\|Ga0207684_11039525	Not Available	684	Open in IMG/M
3300025910\|Ga0207684_11466227	Not Available	556	Open in IMG/M
3300025910\|Ga0207684_11501870	Not Available	548	Open in IMG/M
3300025922\|Ga0207646_10890782	Not Available	790	Open in IMG/M
3300025922\|Ga0207646_10904182	Not Available	783	Open in IMG/M
3300025922\|Ga0207646_11397798	Not Available	609	Open in IMG/M
3300025929\|Ga0207664_10588599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	999	Open in IMG/M
3300026551\|Ga0209648_10741623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	536	Open in IMG/M
3300027842\|Ga0209580_10123762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1262	Open in IMG/M
3300027915\|Ga0209069_10491531	Not Available	689	Open in IMG/M
3300027915\|Ga0209069_10877737	Not Available	542	Open in IMG/M
3300031670\|Ga0307374_10529690	Not Available	622	Open in IMG/M
3300031671\|Ga0307372_10524996	Not Available	554	Open in IMG/M
3300031672\|Ga0307373_10601977	Not Available	562	Open in IMG/M
3300031720\|Ga0307469_12147759	Not Available	543	Open in IMG/M
3300032160\|Ga0311301_10351770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2304	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.00%
Host-Associated	Host-Associated	2.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.00%
Aquatic	Environmental → Aquatic	4.00%
Plants	Host-Associated → Plants	2.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.00%
Sediment	Environmental → Aquatic → Sediment	4.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.00%
Loam	Environmental → Terrestrial → Soil → Loam	34.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.00%
Clay	Environmental → Terrestrial → Soil → Clay	3.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.00%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	33.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.00%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.00%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	3.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.00%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	32.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.00%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	7.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.00%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.00%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	3.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.00%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.00%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013758	Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031672	Soil microbial communities from Risofladan, Vaasa, Finland - OX-2	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A10PFW1_120958082	3300001538	Permafrost	VGLAXXXXLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSDLASYRILDDSWDWRREALVHMPDKVWKKLLAAGLNPDDVVREVLGSGDS*
JGI25617J43924_101222142	3300002914	Grasslands Soil	QELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
JGI25617J43924_101307321	3300002914	Grasslands Soil	YHRGDQERRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0066674_102858871	3300005166	Soil	LIVHLATYHRGDQELRRLSSLAFVAENREIDLGAPIVSNIATYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0066683_108093621	3300005172	Soil	QTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLVVHLATYHRGDQELRRLSSLAFVAENRESDVGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES
Ga0066388_1058269862	3300005332	Tropical Forest Soil	MSADRNLAPQVVRRMIGAGVDLVVHLATYHRGDQELRRLSSLAFVAENPENDLGAPVVSNLASYRILDDSWDWRREALVHMPDKVWRKLLAAGLNPDDMVREVVGNGEP*
Ga0070708_1001163694	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	HLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALMHMPDKIWRKLLAAGVNPDDVVREVLGNGES*
Ga0070708_1006634471	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	HVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENQENDVGSLVVSGLASYRVVDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0070708_1016541852	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	HLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSNLASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0066686_107065261	3300005446	Soil	ELRRLSSLAFVAENRENDVGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0066682_109095482	3300005450	Soil	QTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLVVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIATYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES
Ga0070706_1000019701	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSAYHRADKELRRLASLAFVAENRENDLGAPIVSHVASYRILDDSWEWRREAVTHMPDKIWRKLLAAGINPDDVVREVIGNGES*
Ga0070706_1002301503	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0070706_1002875241	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLGSIAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNAES*
Ga0070706_1005567361	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDMGSPVVSGLASYRILDDSWEWRREALVHMPDKVWRKLLAAGVNPDDVVREVLGNGES*
Ga0070706_1006958571	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AFVAENRENDVGSPIVSNIASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVREVVGNGEP*
Ga0070706_1015115681	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSAYHRAGKELRRLASLAFVAENRETDLGAPVVSNVASYRVVDDSWDWRREAVAHMPDKIWRKLLAAGVNPDDVIREVIGNGES*
Ga0070707_1001302714	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALMHMPDKIWRKLLAAGVNPDDVVREVLGNGES*
Ga0070707_1006804622	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AGVDLIVHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0070707_1008575492	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0070707_1008610942	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPEKIWRKLLAAGVNPEDMVREVLGNGES*
Ga0070707_1008884201	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSNIASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0070707_1010720592	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TYHRGDQELRRLGSLAFVAENRENDLGSPIVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0070707_1018294061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DLIVHLSTFHRGDQELRRLSSIAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNAES*
Ga0070698_1019557922	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPEKIWRKLLAAGVNPEDMVREVLGNGES*
Ga0070699_1000833985	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPEKIWRKLLAAGVNPEDMVREVLGNGES*
Ga0070699_1006410781	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ENRENDLGSPIVSNLASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0070699_1014329412	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSIAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNAES*
Ga0070730_101357893	3300005537	Surface Soil	IGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0066697_106932922	3300005540	Soil	LDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDIGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0070695_1016193762	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSHIASYRIVDDSWDWRREALVHMPDKVWRKLLAAGVNPDDVVREVVGNGES*
Ga0066692_108946822	3300005555	Soil	TYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0066704_105437451	3300005557	Soil	VAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0066703_107398681	3300005568	Soil	RRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREVLVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0066705_105423822	3300005569	Soil	TLHASNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIATYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0070717_106799112	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0075024_1003225732	3300006047	Watersheds	SLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0075026_1003778292	3300006057	Watersheds	VDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0066653_103049302	3300006791	Soil	APHVVRRMIGAGVDLIVHLATYHRSDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0075425_1013891792	3300006854	Populus Rhizosphere	RGDQELRRLSSLAFVAENRENDLGSPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0075436_1010836932	3300006914	Populus Rhizosphere	APHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0099791_103642151	3300007255	Vadose Zone Soil	GAGVDLIVHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSSLASYRILDDSWDWRREALVHMPDKVWKKLLAAGINPEDVVREVLGNGES*
Ga0099794_106517252	3300007265	Vadose Zone Soil	GDQERRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0066710_1016197222	3300009012	Grasslands Soil	AGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGQS
Ga0066710_1037276062	3300009012	Grasslands Soil	IVRLSAYHRADKERRRLASLAFVAENRENDLGAPIVSNVASYRVLDDSWDWRREAVAHMPDKIWRKLLAAGINPDDVVREVIGNGES
Ga0066710_1048945481	3300009012	Grasslands Soil	SNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGDGES
Ga0099830_103400202	3300009088	Vadose Zone Soil	VVRRMIGAGVDLIVHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0099827_114789802	3300009090	Vadose Zone Soil	GDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0099792_112160132	3300009143	Vadose Zone Soil	YHRGDQELRRLASLAFVAENRENDLGSPVVSSLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0134111_102657481	3300010329	Grasslands Soil	ALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0134071_102398311	3300010336	Grasslands Soil	TLHASNPQTALDRLEVLAMSADRNLVPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALAHMPDKVWRKLLAAGVNPDDVVREVVGNGES*
Ga0126350_108425151	3300010880	Boreal Forest Soil	PQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137391_102021801	3300011270	Vadose Zone Soil	LASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137393_105292442	3300011271	Vadose Zone Soil	HASNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137393_106637721	3300011271	Vadose Zone Soil	SNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYQRGDQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0120114_10689162	3300011998	Permafrost	ASLAFVAENRENDLGSPVVSELASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0120118_10453052	3300012010	Permafrost	VHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPEKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137388_106187612	3300012189	Vadose Zone Soil	STFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREVLVHMPDKIWRKLLAAGVNPEDVVREVLGNGGS*
Ga0137388_106940672	3300012189	Vadose Zone Soil	AENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137388_112569222	3300012189	Vadose Zone Soil	ALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137388_113213502	3300012189	Vadose Zone Soil	AGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137383_104178181	3300012199	Vadose Zone Soil	LAPHVVRRMIGAGGDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0137382_102155643	3300012200	Vadose Zone Soil	EVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0137399_106435431	3300012203	Vadose Zone Soil	ELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPDDVVREVLGNGES*
Ga0137374_104080672	3300012204	Vadose Zone Soil	VLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGAPIVSNIASYRIVDDSWDWRREALVHMPDKIWRKLLAAGVNPDDVVREVVGNGES*
Ga0137362_112018832	3300012205	Vadose Zone Soil	MALSRLEVLAMSRDANLAPHVVRQMVGSGVDLVVHLSTFHRGDDEVRRLASLAFVAENPEDPLGSPIVSEAAVYRIADDSWEWRPDALMHMPDKIWRKLLVAGIDPEGLVRQVLSDGRG*
Ga0137379_105157582	3300012209	Vadose Zone Soil	VAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0137361_104712742	3300012362	Vadose Zone Soil	VHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137361_109319431	3300012362	Vadose Zone Soil	RMIGAGVDLVVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSNIASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVGEVVGNGES*
Ga0137361_117408071	3300012362	Vadose Zone Soil	DRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137395_101786343	3300012917	Vadose Zone Soil	LAMSGDANLAPHVVRQMVGSGVDLVVHLSTFHRGDDEVRRLASLAFVAENPEDPLGSPIVSEAAVYRIADDSWEWRPDALMHMPDKIWRKLLVAGIDPEGLVRQVLSDGRG*
Ga0137395_109197162	3300012917	Vadose Zone Soil	HLSTFHRGDQELRRLSSLAFVAENHENDLASPVVSGLASYLILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0137416_116705291	3300012927	Vadose Zone Soil	ASNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGEQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0134110_105887642	3300012975	Grasslands Soil	MIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES*
Ga0120154_10287522	3300013501	Permafrost	MIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0120147_10299691	3300013758	Permafrost	LIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES*
Ga0120172_10842911	3300013765	Permafrost	PHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGALAFVAENRENDLGSPVVSGLASYSILDDSWDWRREALVHMPDKVWKKLLAAGLNPDDVVREVLGSGDS*
Ga0120149_10686861	3300014058	Permafrost	VDLIVHLSPYHRGDQELRRLGALAFVAENRENDLGSPVVSGLASYSILDDSWDWRREALVHMPDKVWKKLLAAGLNPDDVVREVLGSGDS*
Ga0179596_102552262	3300021086	Vadose Zone Soil	LSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0210410_103419763	3300021479	Soil	SLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0207684_100979414	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0207684_104608681	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDMGSPVVSGLASYRILDDSWEWRREALVHMPDKVWRKLLAAGVNPDDVVREVLGNGES
Ga0207684_105855051	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LAMSADRNLAPHVVRRMIGAGVDLIVHLSAYHRAGKELRRLASLAFVAENRETDLGAPVVSNVASYRVVDDSWDWRREAVAHMPDKIWRKLLAAGVNPDDVIREVIGNGES
Ga0207684_106694181	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSHIASYRIVDDSWDWRREALVHMPDKVWRKLLAAGVNPDDVVREVVGNGES
Ga0207684_110395251	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RLSSLAFVAENRENDVGSPIVSNIASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVREVVGNGEP
Ga0207684_114662272	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RRLGSIAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNAES
Ga0207684_115018701	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AFVADNQENDVGSPVVSGLASYRVLDDSWEWRREALVHMPDKIWRKLIAAGVNPEDVVREVLGNGES
Ga0207646_108907822	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RRMIGSGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLANYRILDDSWDWRRETLVHMPDKIWRKLLAAGVNPEDVVREVLGNGES
Ga0207646_109041822	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	STYHRGDQELRRLGSLAFVAENRENDLGSPIVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0207646_113977981	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	NPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTFHRGDQELRRLSSLAFVAENHENDLGSPVVSGLASYRILDDSWEWRREALVHMPDKIWRKLLAAGVNPEDVVREVLGNGES
Ga0207664_105885991	3300025929	Agricultural Soil	VDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSNIASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVREVVGNGES
Ga0209648_107416232	3300026551	Grasslands Soil	DRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0209580_101237621	3300027842	Surface Soil	ASNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLANYRILDDSWDWRREALVHMPEKVWKKLLAAGVNPEDVVREVLGNGES
Ga0209069_104915311	3300027915	Watersheds	AMSADRNLAPHVVRRMIGAGVDLIVHLTTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0209069_108777372	3300027915	Watersheds	YHRGEQELRRLASLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES
Ga0307374_105296902	3300031670	Soil	VDLIVHLSTYHRGDQELRRLGSLAFVAPNRENDLGSPVVSGLASYRILDDSWDWRREALVHMPEKVWKKLLAAGVNPEDVVREVLGNGES
Ga0307372_105249962	3300031671	Soil	LSTYHRGDQELRRLASLAFVAENRENDLGSPVVSELASYRILDDSWDWRREALVHMPDKVWKKLLAAGLNPEDVCREVLGNGES
Ga0307373_106019772	3300031672	Soil	LAPHVVRRLIGAGVDLIVHLSTYHRGDQELRRLASLAFVAENRENDLGSPVVSELASYRILDDSWDWRREALVHMPDKVWKKLLAAGLNPEDVCREVLGNGES
Ga0307469_121477591	3300031720	Hardwood Forest Soil	LHASNPQTALDRLEVLAMSADRNLAPHVVRRMIGAGVDLIVHLATYHRGDQELRRLSSLAFVAENRENDLGSPIVSNIASYRIVDDSWDWRREALAHMPDKIWRKLLAAGVNPDDVVREVVGNGES
Ga0311301_103517704	3300032160	Peatlands Soil	GVDLIVHLSTYHRGDQELRRLGSLAFVAENRENDLGSPVVSGLASYRILDDSWDWRREALVHMPDKVWKKLLAAGVNPEDVVREVLGNGES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104893

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences