NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104811

Metagenome Family F104811

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104811
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 45 residues
Representative Sequence MKRSYIGLALGALVAVGAALSLPSCGHDQKLVSLEIQPTTFTF
Number of Associated Samples 86
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 20.00 %
% of genes from short scaffolds (< 2000 bps) 20.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (89.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(15.000 % of family members)
Environment Ontology (ENVO) Unclassified
(40.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68
1Ga0062384_1001988332
2Ga0062387_1003280531
3Ga0062386_1002225802
4Ga0075019_102474492
5Ga0075019_111210941
6Ga0066659_103960681
7Ga0066660_115674962
8Ga0099793_104374821
9Ga0066793_104552292
10Ga0116117_11425962
11Ga0116117_11882991
12Ga0116106_11522981
13Ga0116106_12014542
14Ga0116132_10963121
15Ga0116135_11475951
16Ga0116135_13150641
17Ga0116223_106614791
18Ga0074044_103918522
19Ga0074044_104147411
20Ga0137391_108740642
21Ga0137362_111012911
22Ga0137362_116243912
23Ga0137390_114276711
24Ga0181527_13899551
25Ga0181534_102009731
26Ga0181526_103474862
27Ga0182027_117639102
28Ga0187802_100527422
29Ga0187820_10893461
30Ga0187848_102973221
31Ga0187854_103544021
32Ga0187819_100924511
33Ga0187879_103518932
34Ga0187817_100887714
35Ga0187891_10110991
36Ga0187891_10114761
37Ga0187868_10493491
38Ga0187880_13250491
39Ga0187874_102834882
40Ga0187861_102575942
41Ga0187864_102675193
42Ga0187885_102634551
43Ga0187855_101921651
44Ga0187871_102220963
45Ga0187890_102722931
46Ga0187859_101331623
47Ga0187772_114975631
48Ga0187770_104040981
49Ga0182031_14324405
50Ga0182028_14625061
51Ga0210403_110881261
52Ga0210404_107842321
53Ga0210396_109571302
54Ga0210394_106172831
55Ga0210398_114583761
56Ga0224541_10026892
57Ga0224551_10017513
58Ga0208323_10315332
59Ga0208692_10824752
60Ga0208191_10030761
61Ga0208691_10933101
62Ga0207664_102111491
63Ga0257180_10530731
64Ga0208042_11803491
65Ga0209733_11361981
66Ga0209333_10307091
67Ga0209333_11112401
68Ga0209248_101784501
69Ga0209772_100995512
70Ga0209448_102424061
71Ga0209169_103272073
72Ga0209067_108999122
73Ga0209067_109490622
74Ga0209006_111342152
75Ga0209698_101764861
76Ga0209698_103989541
77Ga0302149_11782121
78Ga0302153_103013161
79Ga0265338_110128461
80Ga0302228_104980601
81Ga0311368_104455392
82Ga0311368_106244311
83Ga0311327_102177052
84Ga0311327_104482741
85Ga0311338_107747791
86Ga0302179_100055786
87Ga0311356_119922401
88Ga0302310_104100912
89Ga0302180_100035109
90Ga0302325_103725362
91Ga0302324_1014690952
92Ga0302326_114336851
93Ga0302326_131620741
94Ga0311301_105458621
95Ga0311301_105924761
96Ga0307472_1003498843
97Ga0326728_104478542
98Ga0371490_11094771
99Ga0314862_0185912_405_515
100Ga0371488_0005652_11657_11782
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 26.76%    β-sheet: 0.00%    Coil/Unstructured: 73.24%
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Variant

510152025303540MKRSYIGLALGALVAVGAALSLPSCGHDQKLVSLEIQPTTFTFSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
11.0%89.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Watersheds
Vadose Zone Soil
Peatlands Soil
Soil
Soil
Hardwood Forest Soil
Peatland
Tropical Peatland
Bog Forest Soil
Fen
Bog
Prmafrost Soil
Forest Soil
Soil
Agricultural Soil
Soil
Palsa
Bog
Peat Soil
Rhizosphere
15.0%6.0%3.0%11.0%4.0%6.0%5.0%4.0%6.0%4.0%12.0%4.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062384_10019883323300004082Bog Forest SoilMKRSYIGLALGVLVAIGAALSLPSCGHDQKLVSLTIQPTTF
Ga0062387_10032805313300004091Bog Forest SoilMRRSSIWIALGALVTVAALLSLPSCGHDQKLVSLAVMPSGGFVFPTPASSPGQFT
Ga0062386_10022258023300004152Bog Forest SoilMKRSHIGLVLGTLVVIGAVLSLPSCGHDEKVVSITITPTTSTFASPGFTPPPA
Ga0075019_1024744923300006086WatershedsMKRKYVGLAMGALLAVGAALSLPSCGHDQKLVSVTVNPTGGFTFLSDTPTLTFQY
Ga0075019_1112109413300006086WatershedsMKRSFIGLAMGTLVAVGAALSLPSCGHDQKLVSLQIMPQTFTFL
Ga0066659_1039606813300006797SoilMKRNYIGLALGALVTVGAALSLPSCGHDQKLVSLTVQPSGGFVFPVPNA
Ga0066660_1156749623300006800SoilMKRNYIGLALGALVTVGAALSLPSCGHDQKLVSLTVQPSGGFVFPVPNAGATGQY
Ga0099793_1043748213300007258Vadose Zone SoilMKRNYIGLALGALVTVGAALSLPSCGHDQKLVSLTVQPSGGFVFPVPNAGATGQYTA
Ga0066793_1045522923300009029Prmafrost SoilMKRSYIGLALGALVSVGAVLSLPSCGHHQKLVSLAVQPPAHTFLTPDASATE
Ga0116117_114259623300009635PeatlandMKVGSIGLALIALVTLGAVLSLPSCGHDQKVVSLTITPTTSTFLEPGFIPPP
Ga0116117_118829913300009635PeatlandMKRGYVGIALGALMAVGAALSLPSCGHDQKVVSLT
Ga0116106_115229813300009645PeatlandMKRSYIGLALGALVAVGATLSLPSCGHDQKLVSIAVQPLNYTFLTPDTSAQEQFTA
Ga0116106_120145423300009645PeatlandMKRSYIGLALGALVAAGAALILPSCGRDKQLVSIE
Ga0116132_109631213300009646PeatlandMKRSYIGLALGALVAVGAALSLPSCGHDQKLVGLEVQPGAFTFLNP
Ga0116135_114759513300009665PeatlandMKRGYAGIALGALMAVGAALSLPSCGHDQKVVSLTITPATSTFASPGFTPPP
Ga0116135_131506413300009665PeatlandMKRRHIGLAMGAMMVLGAALSLPSCGHDQKLVSLTIQPAAFTFLEPYSPP
Ga0116223_1066147913300009839Peatlands SoilMKRSYIGLALGALVAVGAVLSTPSCGHDQKLVSLEIQ
Ga0074044_1039185223300010343Bog Forest SoilLGTLVAVGAALSLPSCGHDQKLVSLEIQPGTFTFLEPYP
Ga0074044_1041474113300010343Bog Forest SoilMKRSYIGLALGALVAVGAALSLPSCGHDQKLVSLAVDPPSPGFTFPVPTTGA
Ga0137391_1087406423300011270Vadose Zone SoilMKWSYIGLAFGALVAVGAVLSLPSCGNDKKLVGLQIQPGLVTYPSP
Ga0137362_1110129113300012205Vadose Zone SoilMKRSYIGLALSAVVVVGAVLGLPSCGHDQKLVSLTVQPSGGFVFPVPNA
Ga0137362_1162439123300012205Vadose Zone SoilMKRSYIGLALGALVAVGAVLSLPSCGHDQKLVSITIQ
Ga0137390_1142767113300012363Vadose Zone SoilMKRSYIGLALGALVVVGAVLSLPSCGHDQKLVSLTVQPSGGFVFP
Ga0181527_138995513300014153BogMGMKRSYIGLALGALVAVGAVLSLPSCGHDQKLVGITVQPPGFTFLLADKDQTT
Ga0181534_1020097313300014168BogMKRSYIGLALGALVAVGALLSLPSCGHSQKLVGLTITPTTSTFLEPGFT
Ga0181526_1034748623300014200BogMKRSYIALALGALVTVGAVLSLPSCGHSQKLVSLEIQPATFTFLEPY
Ga0182027_1176391023300014839FenMKRSYIGLALGVLVAVGAVLSLPSCGHDQKLVSLAVQPASPGFTFP
Ga0187802_1005274223300017822Freshwater SedimentMKRRYVGLAMGALLAVGGALSLPSCGHDQKVISVTITPTTSTFLEQ
Ga0187820_108934613300017924Freshwater SedimentMKRRYVGLALGALLAVGGALSLPSCGHDQKVISVTITPTTSTFLEP
Ga0187848_1029732213300017935PeatlandMKRSYIGLALGALVAVGAALSLPSCGHSQKLVSLEVQPGAFTFLNPY
Ga0187854_1035440213300017938PeatlandMKRSYIGLALGALVAVGAVLSLPSCAHDQKVVSLTITPTTSTFASP
Ga0187819_1009245113300017943Freshwater SedimentMKRGFIGLAMGAVIAVGAGLSLPSCGHDQKVVGLTITPTTSTFP
Ga0187879_1035189323300017946PeatlandMKRNYVGLALAALVALGASLSLPSCGHSQKLVSIAVTPTTANY
Ga0187817_1008877143300017955Freshwater SedimentMKGSYVGLAIGALIAVGTLLTFPSCGHDQKLVSLTIT
Ga0187891_101109913300017996PeatlandVVGMKKQSYIGLAMGALVAVGAALSLPSCGRDKQLVSLEIH
Ga0187891_101147613300017996PeatlandMKKQSYIGLAMGALVAVGAALSLPSCGRDKQLVSLEIH
Ga0187868_104934913300018002PeatlandMKRSYIGLALGALVAAGAALILPSCGRDKQLVSIEIHPGSFTFLEP
Ga0187880_132504913300018016PeatlandMKRSYIGLAMGTLVAVGAALSLPSCGHDQKLVTLQVNPAGFTFLTATAGAQGQFSAIGT
Ga0187874_1028348823300018019PeatlandMKRRYIGLALGALVAVGAALSLPSCGHDQKLVSLTVSPATALY
Ga0187861_1025759423300018020PeatlandMKRSYIGLAMGTLVAVGAALSLPSCGHDQKLVTLQVN
Ga0187864_1026751933300018022PeatlandMKRSYIGFALGALVAAGAALSLPSCGRDKQLVSLEIHP
Ga0187885_1026345513300018025PeatlandMKRSYIGLALGALVAAGAVLSLPSCGHDQKLVSLAVQPPTA
Ga0187855_1019216513300018038PeatlandMKRSYIGLALGVLVAIGALLSLPSCGHDQKLVSLTITPTTFTFLEPGFNPPP
Ga0187871_1022209633300018042PeatlandMKRNYVGLALAAMVALGASLSLPSCGHSQKLVSLTIT
Ga0187890_1027229313300018044PeatlandMKVGSIGLALIALVTLGAVLSLPSCGHDQKVVSLTITPTTSTFL
Ga0187859_1013316233300018047PeatlandMKRSYIGLALGALVAVGAALSLPSCGHSQKLVSLEVQPGAFTF
Ga0187772_1149756313300018085Tropical PeatlandMKSRYIGLAMGVLVVLGAALSLPSCGHDQKLESITVTPTSAIYPSPDSG
Ga0187770_1040409813300018090Tropical PeatlandMKRGYIGLALGALMVLGAALSLPSCGHDQKVVSLTVTPATATF
Ga0182031_143244053300019787BogMKRSYIGLALGALVAVGAVLSLPSCAHDQKVVSLTITPTTS
Ga0182028_146250613300019788FenMKRSYIGLALCALVAVGAALSLPSCGHDQKLVSIAITPQTFTFSD
Ga0210403_1108812613300020580SoilMKRSYIGLALSALVAVGAVLSLPSCGHDQKVVSLTITPTTSTFLEPGF
Ga0210404_1078423213300021088SoilMKRSYIGLALAALVTVGVVLSLPSCGHDQKLVSLQVQPASPGFTFPVPTAG
Ga0210396_1095713023300021180SoilMKRSYIGLALGALVAIGVVLGLPSCGHDQKLVSLQILP
Ga0210394_1061728313300021420SoilMKRSYIGLALGALVAIGVVLSLPSCGHDQKLVSLQIL
Ga0210398_1145837613300021477SoilMKRSYIGLVLGALVAVVAALSLPSCGHDQKLVSIQIQ
Ga0224541_100268923300022521SoilMKRSYIGLALGALVAVGAALSLPSCGHSQKLVGLTVQPSAGFIFSQATAGATGEFTA
Ga0224551_100175133300023259SoilMKRSFIGLALGALVAVGVVLSLPSCGHDQKLVSLAVQPASPGFTFPVPAA
Ga0208323_103153323300025439PeatlandMKRSYIGLALGALVAAGAVLSLPSCGHDQKLVSLAVQPPTALYPT
Ga0208692_108247523300025472PeatlandMKRSYIGLALGALVAVGAALSLPSCGHDQKLVSLEIQPTTFTF
Ga0208191_100307613300025496PeatlandMKRSYIGLALGALVAVGAALSLPSCGHDQKLVGLEVQPGAFTFLNPYPTTLTEQY
Ga0208691_109331013300025612PeatlandMNSRYVGLALAMLVAVGGALSLPSCGHDQKLVSLQIQPLSHTFIEATAGQ
Ga0207664_1021114913300025929Agricultural SoilMKRSGIGVALGALIAVGAVLSLPGCGHDKKLVSLQVQPSGFTFAVP
Ga0257180_105307313300026354SoilMKKRSYIGLALGALVVVGAVLSLPSCGNDKKLVNIQVQP
Ga0208042_118034913300027568Peatlands SoilMKRSYIGLAMGALVALGAVLSLPSCGHDQKLVSLQVNPAGFTFLKPTAGAQ
Ga0209733_113619813300027591Forest SoilMKWSYIGLAMGALVTVGAMLSLPSCGHDQKLVSLTIQPNTFTFLTQSGTEQYT
Ga0209333_103070913300027676Forest SoilMKRSYIGLALGALVAVGAALSLPSCGHDQKLVSLQIQPQTFTFLTPETSAQEQ
Ga0209333_111124013300027676Forest SoilMKRKYFGLAIGGLIAVGAALSLPSCGHDQKLVSIAVQPTSYTFLQN
Ga0209248_1017845013300027729Bog Forest SoilMRRSSIWIALGALVTVAALLSLPSCGHDQKLVSLAVMPSGGFVFSTPA
Ga0209772_1009955123300027768Bog Forest SoilMKRNYLRLLGTLVVVGVVLSMPSCGHDQKLVSLEIQPGTFTFLNPYS
Ga0209448_1024240613300027783Bog Forest SoilMRRRYFGLALGALVAVGAVLCLPSCGHDQKLVSIAV
Ga0209169_1032720733300027879SoilMKRSYIGLALSTLVAVGGVLSLPSCGHDQKLVSIQIQPQTFTFLTVTE
Ga0209067_1089991223300027898WatershedsMGTVITVGAALSLPSCGHDQKLVSLTIQPGAFTFLTPYVPP
Ga0209067_1094906223300027898WatershedsMKRSFIGLAMGTLVAVGAALSLPSCGHDQKLVSLQIMP
Ga0209006_1113421523300027908Forest SoilMKRKCLGLAVGLLIAVGAVLSLPSCGHDQKLESIQVQPSSYTFLQNV
Ga0209698_1017648613300027911WatershedsMRGRYVGLAMGALAAVAVLLSFPSCGHDQKLVSVTIQPTTFTFLTQAGSEQY
Ga0209698_1039895413300027911WatershedsMKRSYIGLALGALVAVGAALSLPSCGHDQKLVSITVS
Ga0302149_117821213300028552BogMKRSSIGLALVGLVTVGAVLSLPSCGHDQKLVSIQVQPPT
Ga0302153_1030131613300028574BogMKVGSIGLALIALVTLGAVLSLPSCGHDQKVVSLTIT
Ga0265338_1101284613300028800RhizosphereMKRSYIGLAMGTLVAIGAVLSLPSCGHDQKLVSLTVQPSGGFVFPTPA
Ga0302228_1049806013300028808PalsaMKRSYIGLALGALVAVGAALSLPSCGHSQKLVGLTVQPSAGFIFSQATAGATGEFTATASYI
Ga0311368_1044553923300029882PalsaMKRSFIGLALGVLVAVGAVLGLPSCGHDQKLTAVT
Ga0311368_1062443113300029882PalsaMKRSYIGLALGVLVAVGAALSLPSCGHSQKLTSLTIQPQTFTFLTPDTSATE
Ga0311327_1021770523300029883BogMKVGSIGLALIALVTLGAVLSLPSCGHDQKVVSLTITPTTSTFLEP
Ga0311327_1044827413300029883BogMKRSSIGLALVALVTLGAALSLPSCGHDQKVVSLTITPVTSTFLEPGFI
Ga0311338_1077477913300030007PalsaMRRGYIGLALGALVTVGMVLSLPSCGHDRKLVSVQITPQ
Ga0302179_1000557863300030058PalsaMKRSYIGLALGALVAVGAALSLPSCGHSQKLVGLTVQPSAG
Ga0311356_1199224013300030617PalsaMKRSYIGLALGVLVAVGAALSLPSCGHSQKLTSLTIQPQTFT
Ga0302310_1041009123300030737PalsaMKLSWIGLAFGTLLAMGAALSLPSCGHDRKLESITV
Ga0302180_1000351093300031028PalsaMKRSYIGLALGALVAVGAALSLPSCGHDRKLVSIQVQPQTFTFLTGGA
Ga0302325_1037253623300031234PalsaMKLRWIGLALGTLLAMGAALSLPSCGHDQKLVALQ
Ga0302324_10146909523300031236PalsaMKRSYIGLALGALVAVGAALSLPSCGHSQKLVGLTVQPSAGFIFSQ
Ga0302326_1143368513300031525PalsaMKRGHIGLALGALMAVGAVLSLPSCGHDQKLVSLQVQP
Ga0302326_1316207413300031525PalsaMKRSYIGLAFGVLVAVGTALSLPSCGHSQKLVSLTVTPATATYLAPNAVPAVFQ
Ga0311301_1054586213300032160Peatlands SoilMKRRYIGLALGALVALGAVLSLPSCGHDQKLVSLQVNPAGFTFLKPTAGA
Ga0311301_1059247613300032160Peatlands SoilMKRSYIGLALGALVAVGAVLTLPSCGHDQKLVSLQVNPAGFTFLTPNAGATGQFTAIGT
Ga0307472_10034988433300032205Hardwood Forest SoilMKKRSYIWLALGALVAVGAVLSLPSCGNDKKLVNIT
Ga0326728_1044785423300033402Peat SoilMKRSYIGLAMGALVAVGAALSLPSCGFDKKLVNLQIQPAGFTFPLPNA
Ga0371490_110947713300033561Peat SoilMKRGYIGLAMGVMVALGAFLSLPSCGHDQKVVSITITPTSFTFL
Ga0314862_0185912_405_5153300033803PeatlandMRRRYVGLAIALLMVMGAALSLPSCGHDQKLVSLQVQ
Ga0371488_0005652_11657_117823300033983Peat SoilMKQSYIGLALGALVAVGAVLSLPSCGHDQKLVSLEIQPATFT


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