NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104803

Metagenome Family F104803

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104803
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 56 residues
Representative Sequence MQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHAQLACGELCAEAIREEAIQQKRVS
Number of Associated Samples 75
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 83.00 %
% of genes near scaffold ends (potentially truncated) 17.00 %
% of genes from short scaffolds (< 2000 bps) 81.00 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (82.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(22.000 % of family members)
Environment Ontology (ENVO) Unclassified
(43.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(65.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01717Meth_synt_2 24.00
PF09084NMT1 10.00
PF06689zf-C4_ClpX 5.00
PF13379NMT1_2 4.00
PF028262-Hacid_dh_C 2.00
PF05378Hydant_A_N 1.00
PF02538Hydantoinase_B 1.00
PF13378MR_MLE_C 1.00
PF00078RVT_1 1.00
PF00578AhpC-TSA 1.00
PF13711DUF4160 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0620Methionine synthase II (cobalamin-independent)Amino acid transport and metabolism [E] 24.00
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 10.00
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 10.00
COG0145N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunitAmino acid transport and metabolism [E] 2.00
COG0146N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunitAmino acid transport and metabolism [E] 2.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms82.00 %
UnclassifiedrootN/A18.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000559|F14TC_100287150Not Available773Open in IMG/M
3300001661|JGI12053J15887_10454396Not Available613Open in IMG/M
3300002568|C688J35102_120923025All Organisms → cellular organisms → Bacteria2383Open in IMG/M
3300004081|Ga0063454_101209306All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300004281|Ga0066397_10104437Not Available598Open in IMG/M
3300004479|Ga0062595_100234318All Organisms → cellular organisms → Bacteria1173Open in IMG/M
3300004633|Ga0066395_10909926Not Available533Open in IMG/M
3300005180|Ga0066685_10767115All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300005187|Ga0066675_11381937All Organisms → cellular organisms → Bacteria → Proteobacteria517Open in IMG/M
3300005332|Ga0066388_100006623All Organisms → cellular organisms → Bacteria → Proteobacteria8339Open in IMG/M
3300005332|Ga0066388_100182358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2708Open in IMG/M
3300005332|Ga0066388_101046185All Organisms → cellular organisms → Bacteria1374Open in IMG/M
3300005332|Ga0066388_102715502All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300005332|Ga0066388_103822282Not Available768Open in IMG/M
3300005332|Ga0066388_108173882All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300005446|Ga0066686_10412540All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300005558|Ga0066698_10595168All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300005713|Ga0066905_100010764All Organisms → cellular organisms → Bacteria4333Open in IMG/M
3300005713|Ga0066905_100436645All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300005713|Ga0066905_100508662All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300005764|Ga0066903_100070590All Organisms → cellular organisms → Bacteria4465Open in IMG/M
3300005764|Ga0066903_101523822All Organisms → cellular organisms → Bacteria1264Open in IMG/M
3300005841|Ga0068863_100032541All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4970Open in IMG/M
3300005937|Ga0081455_10006438All Organisms → cellular organisms → Bacteria12584Open in IMG/M
3300005983|Ga0081540_1011213All Organisms → cellular organisms → Bacteria → Proteobacteria6008Open in IMG/M
3300005983|Ga0081540_1054224All Organisms → cellular organisms → Bacteria1961Open in IMG/M
3300006046|Ga0066652_101575645All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300006797|Ga0066659_11674337Not Available536Open in IMG/M
3300006903|Ga0075426_10601150All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300006954|Ga0079219_10128864All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300006954|Ga0079219_12266542Not Available524Open in IMG/M
3300007788|Ga0099795_10013080All Organisms → cellular organisms → Bacteria2537Open in IMG/M
3300009012|Ga0066710_100422535All Organisms → cellular organisms → Bacteria → Proteobacteria1992Open in IMG/M
3300009012|Ga0066710_102408057All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300009137|Ga0066709_104019929All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300009792|Ga0126374_10569966All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria830Open in IMG/M
3300010043|Ga0126380_10482993All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria946Open in IMG/M
3300010046|Ga0126384_10286509All Organisms → cellular organisms → Bacteria1348Open in IMG/M
3300010046|Ga0126384_10323245All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300010046|Ga0126384_10577749All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300010047|Ga0126382_10238688All Organisms → cellular organisms → Bacteria1323Open in IMG/M
3300010047|Ga0126382_10292628All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300010047|Ga0126382_10323789All Organisms → cellular organisms → Bacteria1168Open in IMG/M
3300010047|Ga0126382_10347462All Organisms → cellular organisms → Bacteria1135Open in IMG/M
3300010359|Ga0126376_11993874All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium622Open in IMG/M
3300010362|Ga0126377_10061672All Organisms → cellular organisms → Bacteria3303Open in IMG/M
3300010362|Ga0126377_10098284All Organisms → cellular organisms → Bacteria → Proteobacteria2665Open in IMG/M
3300010362|Ga0126377_10131726All Organisms → cellular organisms → Bacteria2324Open in IMG/M
3300010362|Ga0126377_10654636All Organisms → cellular organisms → Bacteria1100Open in IMG/M
3300010362|Ga0126377_12913097Not Available552Open in IMG/M
3300010366|Ga0126379_12249277Not Available646Open in IMG/M
3300010398|Ga0126383_11770186All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300010398|Ga0126383_12545532All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300012081|Ga0154003_1049696All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300012199|Ga0137383_10350331All Organisms → cellular organisms → Bacteria1082Open in IMG/M
3300012208|Ga0137376_11186016All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300012211|Ga0137377_10359399All Organisms → cellular organisms → Bacteria1393Open in IMG/M
3300012349|Ga0137387_10289574All Organisms → cellular organisms → Bacteria1183Open in IMG/M
3300012360|Ga0137375_10050245All Organisms → cellular organisms → Bacteria → Proteobacteria4559Open in IMG/M
3300012361|Ga0137360_10963511All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300012362|Ga0137361_11247396All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium667Open in IMG/M
3300012685|Ga0137397_10018086All Organisms → cellular organisms → Bacteria4930Open in IMG/M
3300012927|Ga0137416_11646914Not Available585Open in IMG/M
3300012944|Ga0137410_10048810All Organisms → cellular organisms → Bacteria3010Open in IMG/M
3300012948|Ga0126375_10344729All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300012948|Ga0126375_10432458Not Available961Open in IMG/M
3300012948|Ga0126375_11980235All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300012948|Ga0126375_12002936Not Available512Open in IMG/M
3300013296|Ga0157374_12304364All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300014150|Ga0134081_10424016All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300018028|Ga0184608_10175061All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300018029|Ga0187787_10305379All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300018078|Ga0184612_10016441All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3778Open in IMG/M
3300018433|Ga0066667_10366038All Organisms → cellular organisms → Bacteria1153Open in IMG/M
3300018482|Ga0066669_10986328All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300019789|Ga0137408_1214591All Organisms → cellular organisms → Bacteria2736Open in IMG/M
3300020170|Ga0179594_10273987All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300021078|Ga0210381_10397449All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300022756|Ga0222622_10370884All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300026555|Ga0179593_1112416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2849Open in IMG/M
3300027512|Ga0209179_1039294All Organisms → cellular organisms → Bacteria → Proteobacteria992Open in IMG/M
3300027646|Ga0209466_1080657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium657Open in IMG/M
3300027669|Ga0208981_1041060All Organisms → cellular organisms → Bacteria1181Open in IMG/M
3300027874|Ga0209465_10640674Not Available524Open in IMG/M
3300027907|Ga0207428_11277049All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300028792|Ga0307504_10065020All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300028796|Ga0307287_10267167All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300028811|Ga0307292_10492058Not Available526Open in IMG/M
3300028814|Ga0307302_10406611All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300028876|Ga0307286_10138871All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300028878|Ga0307278_10211518All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300028881|Ga0307277_10027960All Organisms → cellular organisms → Bacteria2234Open in IMG/M
3300031184|Ga0307499_10014341All Organisms → cellular organisms → Bacteria1629Open in IMG/M
3300031184|Ga0307499_10069171Not Available908Open in IMG/M
3300031226|Ga0307497_10460686Not Available620Open in IMG/M
3300031720|Ga0307469_11568052All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300031740|Ga0307468_101579214Not Available612Open in IMG/M
3300032174|Ga0307470_10484550All Organisms → cellular organisms → Bacteria898Open in IMG/M
3300032180|Ga0307471_101496757All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300032205|Ga0307472_100699770Not Available911Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil22.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil15.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil3.00%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere3.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.00%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012081Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaGHost-AssociatedOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027512Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027669Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TC_10028715023300000559SoilMQVSIVSMAKPWAYNEPFRNMEQGVEAHSPGTQFGNGEFCAAAIRERTSQLKRVL*
JGI12053J15887_1045439623300001661Forest SoilMQVSVVSVVQPWTCCSEPFHIMEQGVVAHSPHAQLAGGELCAEAVREEAIQQKRVS*
C688J35102_12092302533300002568SoilMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGRGEATREEMNKPKRVS*
Ga0063454_10120930613300004081SoilMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGRGEATRE
Ga0066397_1010443713300004281Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPGTQFGNGEFCAAAIRDKTSQPKRVL*
Ga0062595_10023431823300004479SoilMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAKFDYGGLCGEATREEMNQQKRVS*
Ga0066395_1090992623300004633Tropical Forest SoilAYCSEPFHIMEQGVRAHAPHAQLACGEFCAEAVREEAIQQKRVS*
Ga0066685_1076711513300005180SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDMQFGNGEFCAAAIRETTSQLKRVL*
Ga0066675_1138193723300005187SoilSIVSVAKPWAYCNEPFRNMEQQGVEAHSPHMQLGNGEFCAAAIRDKTSQLKRVL*
Ga0066388_10000662313300005332Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPHMQFGNGEFCAAAIRETTSQLKRVL*
Ga0066388_10018235833300005332Tropical Forest SoilMQVSVVSVVQSWAYCSEPFHIMEQGVRAHAPHAQLACGEFCAEAVREEAIQQKRVS*
Ga0066388_10104618513300005332Tropical Forest SoilMQESVVSVVQPWAYCSEPFHIMEQGVRAHAPHAQLACGELCAEAIREEAIQQKRVS*
Ga0066388_10271550223300005332Tropical Forest SoilMQVSVVSVAKPWAYCSEPFHILEQGVLAHSPHAQLAFGEFCTEAIREEAFQPKRVS*
Ga0066388_10382228223300005332Tropical Forest SoilMQESVVSVVQSWAYCSEPFHIMEQGVRAHAPQAQLACGELCAEAVPEEAFQQKRVS*
Ga0066388_10817388223300005332Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPHTQSGNGEFCAAAIRETTSQLKRVL*
Ga0066686_1041254013300005446SoilMQVSIVSVAKPWAYCNEPFRNMEQQGVEAHSPDMQFCNGEFCAAAIRETTSQLKRVL*
Ga0066698_1059516823300005558SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDMQSGNGEFCAAAIRETTSQLKRVL*
Ga0066905_10001076423300005713Tropical Forest SoilMQVSIVSVAIPWAYCNEPFRNMEQGVEAHSPGTQFGNGEFCAAATRERTSQLKRVL*
Ga0066905_10043664523300005713Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPGTQWGNGEFCAAAIRDKTSQLKRVL*
Ga0066905_10050866223300005713Tropical Forest SoilMQVSIVSVARPSAYCSEPFHIMEQGVIAQSPHVQLAGGELCAEAIQEEAIQQKRVS*
Ga0066903_10007059013300005764Tropical Forest SoilMQVSVVSVVQPWAYCSEPFHIMEQGVRAHAPHAQLACGEFCAEAVREEAIQQKRVS*
Ga0066903_10152382223300005764Tropical Forest SoilVSVAKPWAYCSEPFHILEQGVLAHSPHAQLAFGEFCAEAIREEAFQPKRVS*
Ga0068863_10003254143300005841Switchgrass RhizosphereMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGLCGEATREEMNQQKRVS*
Ga0081455_1000643893300005937Tabebuia Heterophylla RhizosphereMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDTQFGNGEFCAAATRERTSQLKRVL*
Ga0081540_101121323300005983Tabebuia Heterophylla RhizosphereMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGLCGEATQEEMNEQKRVS*
Ga0081540_105422423300005983Tabebuia Heterophylla RhizosphereMMVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDMQLGNGEFCAAATREKTSQLKRVL*
Ga0066652_10157564523300006046SoilMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGRGEATREEMNQPKRVS*
Ga0066659_1167433713300006797SoilMQVSLVSVVQPWTDCSEPFHITEQGVVAHSPHAQLACGELCAEAIREEAIQQKRVS*
Ga0075426_1060115023300006903Populus RhizosphereMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGLCGEATREEMNEQKRVS*
Ga0079219_1012886423300006954Agricultural SoilMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPVQFDYGGLCGEATREEMNEQKRVS*
Ga0079219_1226654213300006954Agricultural SoilMQVSVVSVAKPWAYCSEPFHIMEQGDLAHSPQAQLAFGERCAEASREEAFQPKRVS*
Ga0099795_1001308023300007788Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLAFGERCAEAIREEAIQPKRVS*
Ga0066710_10042253523300009012Grasslands SoilMQVSIVSVAKPWAYCNEPFRNMEQQGVEAHSPHMQLGNGEFCAAAIRDKTSQLKRVL
Ga0066710_10240805723300009012Grasslands SoilMQVSLVSVVQPWTDCSEPFHITEQGVVAHSPSAPFDCGGLCGEATREEMNQQKRVS
Ga0066709_10401992913300009137Grasslands SoilMQVSIVSVAKPWAYCNEPFRNMEQQGVEAHSPHMQLGNGEFCAAAIRDKTSQLKRVL*
Ga0126374_1056996623300009792Tropical Forest SoilMQVSVVSVVHPWAYCSEPFHIMEQGVIAQSPHVQLAGGELCAEAIQEEAIQQKRVS*
Ga0126380_1048299313300010043Tropical Forest SoilPWAYCSEPFHIMEQGVRAHAPHAQLACGEFCAEAVREEAIQQKRVS*
Ga0126384_1028650913300010046Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPYTQSGNGEFCAAAIREKTSQLKRVL*
Ga0126384_1032324523300010046Tropical Forest SoilMQVSIVSVARPSAYCSEPFHIMEQGVIAQSPHVQLAGGELCAEAIREEAIQQKRVS*
Ga0126384_1057774913300010046Tropical Forest SoilMQVSVVSVVQPWAYCSEPFHIMEQGVRAHAPHAQLACGELCAEAIREEAIQQKRVS*
Ga0126382_1023868823300010047Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPYTQSGNGEFCAAAIRETTSQLKRVL*
Ga0126382_1029262823300010047Tropical Forest SoilAMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPGTQFGNGEFCAAAIRDKTSQPKRVL*
Ga0126382_1032378913300010047Tropical Forest SoilMQVSIVSVARPSAYCSEPFHIMEQGVIAQSPHVQLAGGELCAEAVREEAIQQKRVS*
Ga0126382_1034746223300010047Tropical Forest SoilMQESVVSVVQSWTYCSEPFHIMEQGVRAHAPRAQLACGELCAEAVREEAIQQKRVS*
Ga0126376_1199387413300010359Tropical Forest SoilRANPCHSGGAMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPYTQSGNGEFCAAAIRETTSQLKRVL*
Ga0126377_1006167243300010362Tropical Forest SoilMQVSIVSVAIPWAYCNEPFRNMEQGVEAHSPDMQFGNGEFCAAATRERTSQLKRVL*
Ga0126377_1009828413300010362Tropical Forest SoilHSGGAMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPGTQFGNGEFCAAAIRDKTSQLKRVL*
Ga0126377_1013172633300010362Tropical Forest SoilMQESVVSVVQSWTYCSEPFHIMEQGVRAHAPRAQLACGELCAEAVREEAVQQKRVS*
Ga0126377_1065463623300010362Tropical Forest SoilVAKPWAYCNEPFRNMEQGVEAHSPHMQFGNGEFCAAAIRETTSQLKRVL*
Ga0126377_1291309713300010362Tropical Forest SoilMQVSIVSVAKLWAYCNEPFHITEQGVVALSPPAQFDYGGLCGEATREEMNQQKRVS*
Ga0126379_1224927713300010366Tropical Forest SoilMQVSVVSVAKPWAYCSEPFHILEQGVLAHSPHAQLAHGGLCAEAVQEEAIEPKRVS*
Ga0126383_1177018613300010398Tropical Forest SoilMQVSVVSVAKPWAYCSEPFHIMKQGVIAQSPHVQLAGGEFCAEAIQEEAIQQKRVS*
Ga0126383_1254553223300010398Tropical Forest SoilVSIVSVAKPWAYCNEPFRNMEQGVEAHSPHMQFGNGEFCAAAIRETTSQLKRVL*
Ga0154003_104969623300012081Attine Ant Fungus GardensMQVSIVSVARTWAYCSEPFHITEQGVVALSPPAQFDYGGLCGEATREEMNQQKRVS*
Ga0137383_1035033123300012199Vadose Zone SoilMQVSLVSVVQPWAYCSEPFHIMEQGVVAHSPHVQLAFGERCAEAIREEAIQPKRVS*
Ga0137376_1118601623300012208Vadose Zone SoilMQVSLVSVVQHWAYCSEPFHITEQGVVAHSPHAQLASGELCAEAIREEAIQQKRVS*
Ga0137377_1035939923300012211Vadose Zone SoilMQVSLVSVVQSWAYCSEPFHITEQGVVAHSPHAQLACGELCAEAIREEAIQHKRVS*
Ga0137387_1028957423300012349Vadose Zone SoilMQVSLVSVVQSWAYCSEPFHITEQGVVAHSPHAQLACGELCAEAIREEAIQQKRVS*
Ga0137375_1005024553300012360Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLAVGELCAEAIREEAIQPKRVS*
Ga0137360_1096351123300012361Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHAQLAFGERCAEAIREEAIQPKRVS*
Ga0137361_1124739623300012362Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHAQLACGELCAEAIREEAIQQKRVS*
Ga0137397_1001808643300012685Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEEGVLAHSPHVQLALGELCAEAIREEAIQPKRVS*
Ga0137416_1164691413300012927Vadose Zone SoilMQVSLVSVVQSWAYCSEPFHILEQGVVAHSPHAQLACGELCAEAIREEAIQQKRVS*
Ga0137410_1004881053300012944Vadose Zone SoilMQVSLVSVVQPWAYCSEPFHIMEQGVVAHSPHAQLASGELCAEAIRGEAIQQKRVS*
Ga0126375_1034472923300012948Tropical Forest SoilMMVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDMQLGNGEFCAAAIRDKTSQLKRVL*
Ga0126375_1043245823300012948Tropical Forest SoilMQESVVSVVPASIKNNEPFHIMEQGVRAHAPRAQLACGELCAEAVREEAIQQKRVS*
Ga0126375_1198023513300012948Tropical Forest SoilPCHSGGAMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDMQFGNGEFCAAAIRETTSQLKRVL*
Ga0126375_1200293613300012948Tropical Forest SoilMQVSIVSVAKLWAYCNEPFHITEQGVVALSPPAQFDYGGPCGEATREEMNQQKRVS*
Ga0157374_1230436413300013296Miscanthus RhizosphereMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGLCGEATREEMNQKKRVS*
Ga0134081_1042401623300014150Grasslands SoilCHSGGAMQVSIVSVAKPWAYCNEPFRNMEQQGVEAHSPDMQLGNGEFCAAAIRDKTRQLKRVL*
Ga0184608_1017506123300018028Groundwater SedimentMQVSVVSVAKPLAYCSEPFHIMEQGDVAHSPHVQLALGELCAEAIREEAIQPKRVS
Ga0187787_1030537913300018029Tropical PeatlandMQVSIVSVAKPWAYCSEPFHITEQGVVALSPPAQFDYGGRGEATREEMNQHKRVS
Ga0184612_1001644113300018078Groundwater SedimentMQVSIVSVAKPWAYCNEPFHITEQGVVALSPPAQFDYGGLCGEAIREEMNQPKRVS
Ga0066667_1036603823300018433Grasslands SoilMQVSIVSVAKPWAYCSEPFHIMEQGVVAHSPHAQLAFGEPCAEAIREEAIQPKRVS
Ga0066669_1098632813300018482Grasslands SoilMQVSLVSVVQSWTDCSEPFHITQQGVVAHSPHAQLACGELCAEAIREEAIQQKRVS
Ga0137408_121459123300019789Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHAQLAFGERCAEAIREEAIQPKRVS
Ga0179594_1027398723300020170Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIIEQGVVAHSPHAQLAFGEISAEAAREEAIQPKRVS
Ga0210381_1039744923300021078Groundwater SedimentMQVSVVSVAKPWAYCSEPFHIMEQGDVAHSPHVQLALGELCAEAIREEAIQPKRVS
Ga0222622_1037088413300022756Groundwater SedimentMQVSVVSVAKPLAYCSEPFHIMEEGVLAHSPHVQLALGELCAEAIREEAIQPKRVS
Ga0179593_111241613300026555Vadose Zone SoilMQVSVVSVVQPWAYCSEPFHIMEQGVVAHSPHAQLAGGELCAEAIREEAIQPKRVS
Ga0209179_103929423300027512Vadose Zone SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLAFGERCAEAIREEAIQPKRVS
Ga0209466_108065713300027646Tropical Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPHTQSGNGEFCAAAIRDKTSQPKRVL
Ga0208981_104106023300027669Forest SoilSIVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLAFGERCAEAIREEAIQPKRVS
Ga0209465_1064067423300027874Tropical Forest SoilFHIMEQGVRAHAPHAQLACGEFCAEAVREEAIQQKRVS
Ga0207428_1127704923300027907Populus RhizosphereMQVSIVSVAKLWAYCSEPFHITEQGVVALSPPAQFDYGGPCGEATREEMNQQKRVS
Ga0307504_1006502023300028792SoilMQVSVVSVAKPWAYCSEPFHIIEQGVLAHSPHAQLAVGELCAEAGREEAIQPKRVS
Ga0307287_1026716713300028796SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLALGELCAEAIREEAIQPKRVS
Ga0307292_1049205813300028811SoilVESLVTSGGAMQVSIVSVAKLWAYCSEPFHIMEQGVLAHSPHAQLAYGELCAEAIREEAFQPKRVS
Ga0307302_1040661123300028814SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLALGGLCTEAIPEEAIQPKRVS
Ga0307286_1013887133300028876SoilMQVSIVSVAKLWAYCSEPFHIMEQGVLAHSPHAQLAYGELCAEAIREEAFQPKRVS
Ga0307278_1021151833300028878SoilMQVSVVSVAQPWAYCSEPFHIMEQGVVAHSPHVQLASGELCAEAIREEAIQPKRVS
Ga0307277_1002796043300028881SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHVQLALGGLCTEAIPE
Ga0307499_1001434123300031184SoilMQVSIVSVAKHWAYCSEPFHITEQGVVALSPPAQSDYGGLCGEATREEMNQQKRVS
Ga0307499_1006917113300031184SoilMQVSLVSVAKPWAYCSEPFHIMEQGVLAHSPHAQLAVGELCAEASREEAIQPKRVS
Ga0307497_1046068613300031226SoilMQVSLVSVAKPWAYCSEPFNIMEQGVLAHSPHVQLACGELCAEAIREEAFQPKRVS
Ga0307469_1156805223300031720Hardwood Forest SoilMQVSIVSVAKPWAYCNEPFRNMEQGVEAHSPDTQFGNGEFCAAATRERTSQLKRVL
Ga0307468_10157921413300031740Hardwood Forest SoilMQVSIVSVAKTWAYCSEPFHITEQGVVALSPPAQFDYGGLCGEATREEMNQPKRVS
Ga0307470_1048455023300032174Hardwood Forest SoilMQVSVVSVAKPWAYCSEPFHIMEQGVVAHSPHAQLAFSELCAEAIREEAFQPKRVS
Ga0307471_10149675723300032180Hardwood Forest SoilMQVSIVSVAKTWAYCSEPFNITEQGVVALSPPAQFDYGGLCGEATREEMNQQKRVS
Ga0307472_10069977013300032205Hardwood Forest SoilMQVSVVSVAKPWAYCSEPFHIMEQGVLAHSPHAQLAVGEFCAEAMREEAFQPKRVS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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