NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F104800

Metagenome / Metatranscriptome Family F104800

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104800
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 105 residues
Representative Sequence TVTVKVRPLITLTLVTLSTGSFSTKVMAARSFAGKFVLVQRLSSTGVATLKKVTLDAGSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVLTVSR
Number of Associated Samples 76
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 90.00 %
% of genes from short scaffolds (< 2000 bps) 88.00 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(35.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 2.36%    β-sheet: 42.52%    Coil/Unstructured: 55.12%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF03861ANTAR 3.00
PF13641Glyco_tranf_2_3 2.00
PF00300His_Phos_1 2.00
PF13579Glyco_trans_4_4 1.00
PF00903Glyoxalase 1.00
PF03450CO_deh_flav_C 1.00
PF13738Pyr_redox_3 1.00
PF03640Lipoprotein_15 1.00
PF00557Peptidase_M24 1.00
PF00665rve 1.00
PF03795YCII 1.00
PF02371Transposase_20 1.00
PF01614IclR 1.00
PF00496SBP_bac_5 1.00
PF03979Sigma70_r1_1 1.00
PF07730HisKA_3 1.00
PF00072Response_reg 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3707Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domainsTranscription [K] 3.00
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.00
COG1414DNA-binding transcriptional regulator, IclR familyTranscription [K] 1.00
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 1.00
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 1.00
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 1.00
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 1.00
COG3547TransposaseMobilome: prophages, transposons [X] 1.00
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 1.00
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 1.00
COG4315Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)Function unknown [S] 1.00
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 1.00
COG4584TransposaseMobilome: prophages, transposons [X] 1.00
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.00 %
UnclassifiedrootN/A5.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2140918013|NODE_664694_length_1346_cov_5.858841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1378Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0550349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium518Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0551462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium560Open in IMG/M
3300000559|F14TC_109607205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium588Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10117559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium556Open in IMG/M
3300000956|JGI10216J12902_127321489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium630Open in IMG/M
3300004479|Ga0062595_100703911All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium812Open in IMG/M
3300005167|Ga0066672_10225253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1201Open in IMG/M
3300005167|Ga0066672_10871339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium560Open in IMG/M
3300005171|Ga0066677_10414506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium770Open in IMG/M
3300005171|Ga0066677_10837521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium507Open in IMG/M
3300005172|Ga0066683_10852127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium526Open in IMG/M
3300005175|Ga0066673_10150100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1297Open in IMG/M
3300005177|Ga0066690_10443763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium879Open in IMG/M
3300005177|Ga0066690_10591308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium741Open in IMG/M
3300005181|Ga0066678_11050039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium526Open in IMG/M
3300005187|Ga0066675_10258557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1246Open in IMG/M
3300005187|Ga0066675_10770940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium725Open in IMG/M
3300005332|Ga0066388_100320201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2196Open in IMG/M
3300005332|Ga0066388_103675378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium783Open in IMG/M
3300005445|Ga0070708_100099272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2663Open in IMG/M
3300005468|Ga0070707_100057610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales3727Open in IMG/M
3300005518|Ga0070699_100514709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1088Open in IMG/M
3300005540|Ga0066697_10727499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium542Open in IMG/M
3300005558|Ga0066698_10046032All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2735Open in IMG/M
3300005559|Ga0066700_10927899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium577Open in IMG/M
3300005559|Ga0066700_11125401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium513Open in IMG/M
3300005569|Ga0066705_10808434All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium559Open in IMG/M
3300005574|Ga0066694_10299823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium765Open in IMG/M
3300005575|Ga0066702_10677447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium615Open in IMG/M
3300005586|Ga0066691_10920816All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
3300006032|Ga0066696_10571194All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium737Open in IMG/M
3300006034|Ga0066656_10025585All Organisms → cellular organisms → Bacteria3222Open in IMG/M
3300006046|Ga0066652_100377623All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1284Open in IMG/M
3300006046|Ga0066652_100428809All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1211Open in IMG/M
3300006800|Ga0066660_10091199All Organisms → cellular organisms → Bacteria2129Open in IMG/M
3300009012|Ga0066710_100439156All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1954Open in IMG/M
3300009012|Ga0066710_101715498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium955Open in IMG/M
3300009090|Ga0099827_11782668All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium536Open in IMG/M
3300009137|Ga0066709_100547567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1639Open in IMG/M
3300009137|Ga0066709_103654332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium558Open in IMG/M
3300009147|Ga0114129_10398466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1814Open in IMG/M
3300010114|Ga0127460_1120012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium618Open in IMG/M
3300010304|Ga0134088_10500472Not Available599Open in IMG/M
3300010329|Ga0134111_10405448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium584Open in IMG/M
3300011999|Ga0120148_1067347All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium709Open in IMG/M
3300012019|Ga0120139_1152583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium602Open in IMG/M
3300012189|Ga0137388_10214318All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1740Open in IMG/M
3300012189|Ga0137388_11785593All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium547Open in IMG/M
3300012198|Ga0137364_10103631All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2007Open in IMG/M
3300012198|Ga0137364_10858137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium686Open in IMG/M
3300012199|Ga0137383_10305706All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1165Open in IMG/M
3300012199|Ga0137383_10740956All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium718Open in IMG/M
3300012199|Ga0137383_11355562All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium505Open in IMG/M
3300012200|Ga0137382_10092431All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1982Open in IMG/M
3300012201|Ga0137365_10865069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium660Open in IMG/M
3300012205|Ga0137362_11020914All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium704Open in IMG/M
3300012207|Ga0137381_11391801All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium594Open in IMG/M
3300012208|Ga0137376_10157441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1956Open in IMG/M
3300012208|Ga0137376_11306103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium616Open in IMG/M
3300012209|Ga0137379_11357011All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium615Open in IMG/M
3300012209|Ga0137379_11364918All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium613Open in IMG/M
3300012285|Ga0137370_10185139All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1217Open in IMG/M
3300012350|Ga0137372_10334750All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1163Open in IMG/M
3300012350|Ga0137372_11080400All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium553Open in IMG/M
3300012353|Ga0137367_11101394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium536Open in IMG/M
3300012356|Ga0137371_10327632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1191Open in IMG/M
3300012356|Ga0137371_10399093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1066Open in IMG/M
3300012356|Ga0137371_11098088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium598Open in IMG/M
3300012357|Ga0137384_11501113All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium523Open in IMG/M
3300012359|Ga0137385_10859630All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium752Open in IMG/M
3300012360|Ga0137375_10227813All Organisms → cellular organisms → Bacteria1739Open in IMG/M
3300012360|Ga0137375_11099065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium617Open in IMG/M
3300012362|Ga0137361_10698358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium927Open in IMG/M
3300012387|Ga0134030_1145288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium520Open in IMG/M
3300012392|Ga0134043_1067191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium581Open in IMG/M
3300012395|Ga0134044_1024314All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium509Open in IMG/M
3300012409|Ga0134045_1314158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
3300012532|Ga0137373_11040819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium590Open in IMG/M
3300012917|Ga0137395_10278671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1180Open in IMG/M
3300012977|Ga0134087_10423957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium653Open in IMG/M
3300015357|Ga0134072_10343762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium570Open in IMG/M
3300018433|Ga0066667_10171443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1559Open in IMG/M
3300018433|Ga0066667_12275117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium507Open in IMG/M
3300018468|Ga0066662_12050716All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium599Open in IMG/M
3300018468|Ga0066662_12523476All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium542Open in IMG/M
3300019789|Ga0137408_1121841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium806Open in IMG/M
3300025910|Ga0207684_10193753All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1753Open in IMG/M
3300025922|Ga0207646_10052397All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3651Open in IMG/M
3300026301|Ga0209238_1242518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium535Open in IMG/M
3300026306|Ga0209468_1040085All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1612Open in IMG/M
3300026528|Ga0209378_1246959All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium567Open in IMG/M
3300026536|Ga0209058_1130577All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300026538|Ga0209056_10324635All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1038Open in IMG/M
3300027875|Ga0209283_10766501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium597Open in IMG/M
3300027882|Ga0209590_10684464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium657Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil35.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil29.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil11.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil9.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil4.00%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2140918013Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)EnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300010114Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300011999Permafrost microbial communities from Nunavut, Canada - A28_65cm_6MEnvironmentalOpen in IMG/M
3300012019Permafrost microbial communities from Nunavut, Canada - A7_5cm_12MEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012387Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012392Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012395Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012409Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026306Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Iowa-Corn-GraphCirc_000880902140918013SoilGGHWSEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSKASGSFSTKVSAARPFTGKFVLVQRLSSTGVSTLKRVTLDANSAASFHVRLHLGRSRLRVVMPSSQTAPGYITGTSNVVTVSH
ICChiseqgaiiDRAFT_055034913300000033SoilATSSTVSVKVRPLITLTLVSKASGSFSTKVSAARPFTGKFVLVQRLSSTGVSTLKRVTLDANSAASFHVRLHLGRSRLRVVMPSSQTAPGYITGTSNVVTVSH*
ICChiseqgaiiDRAFT_055146213300000033SoilVKVRPLITLTLVSKASGSFSTKVSAARPFTGKFVLVQRLSSTGVSTLKRVTLDANSAASFHVRLHHGRSRLRVVMPTSQTAPGYITGTSNVVTVSH*
F14TC_10960720513300000559SoilVKVRPMITLTLVSLANGTFSTKVTAARAFTGKFVNVQRLTSFGALTVKKVKLDSSSSATFHVRLHSGRNRLRVVMPTAQAAPGYVIGTSKVVRVTR*
AF_2010_repII_A001DRAFT_1011755913300000793Forest SoilSGESVQVMTENYPATSFSALASPLATTAGGHWTDVVQPNIQTSYMATWKGAGSRTVTVKVRPLITLSLANLANGTFSTKVTAARLFSGKSVNVQRLTTSGALTVKKVKLDSNSAATFHVRLHAGRNRLRVVMPTSQAAPGYINGASKVLKVTR*
JGI10216J12902_12732148923300000956SoilSSTVTVKVRPLIALTLVKLATGTFSTKVTAAHSFAGKFVNVQRLTSTGALTLKKVALDSNSSATFRVRLHAGRNRLRVVMPTAQTAPGYISGMSKVLTVRR*
Ga0062595_10070391113300004479SoilGHWSEVVKPTIETSYQAKWKNATSSTVSVKVRPLVTLTLISQATGRFSTQVSAARAFTGKFVLVQRLTSDGVSTLKRVTLDANSAASFRVRLHSGRSRLRVVIPSSQTAPGYITGTSNVVTVNH*
Ga0066672_1022525323300005167SoilTVTVKVRPLITLTLVTLSTGSFSTKVMAARSFAGKFVLVQRLSSTGVATLKKVTLDAGSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVLTVSR*
Ga0066672_1087133923300005167SoilLVKLATGTFSIKVTAARSFAGKFVNVQRLTSTGALTLKKLTLDSNSSATFRVRLHAGRNRLRAVMPTSQTMPGYISGISKVLTVTR*
Ga0066677_1041450613300005171SoilKWKSATSSTVSVKVRPLITLALVSQGTGRFSTKVSAGRSFAGKFVLVQRLTSTGVATLKRVTLDANSAASFRVRLHLGRSRLRVVMPSSQTAPGYITGTSNVVTVLH*
Ga0066677_1083752123300005171SoilIETSYQATWKSATSPNVTVKVRPLITLALVNLSTGSFSTKVTAARSFADKFVLVQRLSSTGVATLKKVTLNAASSATFRVRLHHGRNRLRAVMPTSQTEPGYITGMSKVLTVSR*
Ga0066683_1085212713300005172SoilSSTVTVKVRPLITLTLINIASGRFSTKATAARSFAGKFVLVQRLSSTGVATLKKVTLDAGSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVMTVSR*
Ga0066673_1015010023300005175SoilITLALVSQGTGRFSTKVSAGRSFAGKFVLVQRLTSTGVVTLKRVTLDANSAASFRVRLHHGRSRLRVVMPTSQTAPGYITGTSNVVSVLH*
Ga0066690_1044376333300005177SoilTLVNASNGTFSTKVTAARSFAGKFVLVQRLSSTGVVTLKKVTLDANSAASFRVRLHHSRSRLRVVMPSSQTAPGYITGTSNVLTVGA*
Ga0066690_1059130823300005177SoilETSYEASWMNQTSKAVTVKVRPMIILTLVNLTSRTFSTKVNGARSFAGKFVLVERLSSTGATTMKKVTLDANSSATFTVRLHHGRSRLRVVMPTSQTEPGYITGMSNVLTVTR*
Ga0066678_1105003913300005181SoilVTVKVRPLVTLTLVNLSTGGFSTKVTAARAFTGKFVLVQRMTSTGVTTLKKVTLDSSSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVLTVSR*
Ga0066675_1025855713300005187SoilKVRPLITLALVSQGTGRFSTKVSAARSFAGKFVLVQRLTSTGVATLKRVTLDANSAASFRVRLHLGRSRLRVVMPSSQTAPGYITGTSNVVTVLH*
Ga0066675_1077094013300005187SoilWTDIVKPTIETSYEAKWKNATSSTVTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQAAPGYITGVSKVLTVSR*
Ga0066388_10032020153300005332Tropical Forest SoilANATFSTKVTAARAFTGKSVNVQRLTSSGALTVKKVKLDSNSSATFRVRLHPGRNRLRVVMPSAQAAPGYVSGASKVLRVTR*
Ga0066388_10367537823300005332Tropical Forest SoilVRPMVTLTLVTAATGTLSTKVTGERPFAGKFVLVERLSSTGVATLKKVTLDASSSATFTVRLHHGRNQLRVVMPTSQTAPGYVAGMSNTLTVTR*
Ga0070708_10009927233300005445Corn, Switchgrass And Miscanthus RhizosphereAGGHWTDAVKPTIETSYEAKWKSETSSTVTVKVRPLITLTLVHLSTGTFSTKVTAARSFAGKFVLVQRLSSSGVATQKKVILDTNSSATFSVRLHQGRSRLRVVMPTSQTAPGYITGASKVLTINR*
Ga0070707_10005761033300005468Corn, Switchgrass And Miscanthus RhizosphereSGGHWSEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSQASGRFSTKVSAARSFAGKFVLVQRLSSTGVSTLKRVTLDPNSAASFAVRLHHGRSRLRVVMPTSQTAPGYITGTSNVLTVSH*
Ga0070699_10051470923300005518Corn, Switchgrass And Miscanthus RhizosphereVQTVSGGHWSEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSKATGSFLTKVSAARSFAGKFVLVQRLSSTGVSTLKRVTLDANSAASFRVRLHAGRSRLRLVMPTSQTAPGYITGTSNVVTVLH*
Ga0066697_1072749913300005540SoilLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR*
Ga0066698_1004603253300005558SoilVKWKSATSSTVTVKVRPLITLTLVNVSAGTFSTKVAAARSFAGKFVLVQRLSSAGVATLKKVTLNTSSSATFRVRLHHGRSRLRVAMPTSQTAPGYISATSKLLTVHR*
Ga0066700_1092789913300005559SoilSSTVTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVNLDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR*
Ga0066700_1112540123300005559SoilTVTVKVRPLITLTLVKLSTGSLSTKVTAARSFADKFVLVQRLSSTGVATLKKVTLNAASSATFRVRLHHGRNRLRAVMPTSQTEPGYITGMSKVLTVSR*
Ga0066705_1080843423300005569SoilGRSRCQANFTLTPINLASGRFSTKATAARSFAGEFVLVQRLSSTGVATLKKVTLDASSSATFRVRLHQGRSRLRVVMPTWQTAPGYITGLSKVVTVSR*
Ga0066694_1029982313300005574SoilTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR*
Ga0066702_1067744723300005575SoilITLALVSQGTGRFSTKVSAGRSFAGKFVLVQRLTSTGVATLKRVTLDANSAASFRVRLHLGRSRLRVVMPSSQTAPGYITGTSNVVTVSH*
Ga0066691_1092081613300005586SoilATSSTVSVKVRPQITLTFSQATGRFSTKVSAARSFAGKFVLVQRLTSTAVVTLKRVTLDANSAASFRVRLHLGRSRLRVVMPTSQTAPGYITGTSNVVTVSH*
Ga0066696_1057119413300006032SoilTSRTVTVKVRPMITLSLVSLANGTFSTKVTAARAFTGKFVNVQRLTRFGALTMKKVKLDSSSSAIFHVRLHSGGNRLRVVMPTAQAAPGYIIGVSKVLRVTK*
Ga0066656_1002558533300006034SoilVKWKSATSSTVTVKVRPLITLTLVNVSAGTFSTKVAAARSFAGKFVLVQRLSSAGIAMLKKVTLNTSSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGTSKVLTVHR*
Ga0066652_10037762323300006046SoilITLSLVSLANGTFSTKVTAARAFTGKFVNVQRLTRFGALTVKKVKLDSSSSATFHVRLHSGRNRLRVVMPTAQAAPGYVIGVSNVFRVTK*
Ga0066652_10042880933300006046SoilITLSLVSLANGTFSTKVTAARAFTGKFVNVQRLTRFGALTMKKVKLDSSSSAIFHVRLHSGGNRLRVVMPTAQAAPGYIIGVSKVLRVTK*
Ga0066660_1009119943300006800SoilKPTIETSYQATWKSATSPNVTVKVRPLITLALVNLSTGSFSTKVTAARSFADKFVLVQRLSSTGVATLKKVTLNAASSATFRVRLHHGRNRLRAVMPTSQTEPGYITGMSKVLTVSR*
Ga0066710_10043915633300009012Grasslands SoilSTVTVKVRPLITLTLVNLSTGTFSTKVTAERSFAGKFVLVQRLSSSGVAALKKVILDTSSSATFRVRLHTGRSRLRVVMPTSQTAPGYITGMSKVLTVSR
Ga0066710_10171549813300009012Grasslands SoilSTVTVKVRPLITLTLVNLSTGTFSTKVTAERSFAGKFVLVQRLSSSGVAALKKVILDTSSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGMSKVLTVSR
Ga0099827_1178266813300009090Vadose Zone SoilYQAKWKSATSSTVSVKVRPLITLALVNLSTGTFSAKVMAARSFAGKFVLVQRVSSTGVRTLKKVTLDTSSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGTSKVLTVHR*
Ga0066709_10054756713300009137Grasslands SoilSTVTVKVRPLITLTLVNLSTGTFSTKVTAERSFAGKFVLVQRLSSSGVAALKKVILDTSSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGMSKVLTVSR*
Ga0066709_10141890113300009137Grasslands SoilLSTGTFSTKVTAERSFAGKFVLVQRLSSSGVAALKKVILDTSSSATFRVRLHTGRSRLRVVMPTSQTAPGYITGMSKVLTVSH*
Ga0066709_10365433213300009137Grasslands SoilKVRPLITLTLVNLSTGTFSTKVTAARSFAGKFVLVQRLSSTGVTTLKKVTLDASSSASFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVLTVNR*
Ga0114129_1039846623300009147Populus RhizospherePTVQTSYQAHWKGATSRTVTVKVRPMITLTLVSVANGTFSTKVTAARAFTGKFVNVQRLTSFGALTVKKVKLDSSSSATFHVRLHAGRNRLRVVMPTAQAAPGYVIGTSKVLRVTK*
Ga0127460_112001213300010114Grasslands SoilDVVKPTIETSYQAKWKSATSSTVTVKVRPLITLALVNLATGTFSTKVMAARSFDGKFVLVQRVSSTGVRTLNKVTLDTNSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGTSKVLTVQR
Ga0134088_1050047223300010304Grasslands SoilVKWKSATSSTVTVKVRPLITLTLVNVSAGTFSTKVAAARSFAGKFVLVQRLSSAGVATLKKVTLNTSSSATFRVRLHHGRSRLRVVM
Ga0134111_1040544823300010329Grasslands SoilQTSYEASWMTNTSQPVTVKVRPMITLALVSRASGTFSTKVTAARAFTGKFVLVQRLTSTGVTNLKKVTLDAGSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVMTVSR*
Ga0120148_106734713300011999PermafrostVTVKVRPLITLTLVSLSTGTFSTKVAAARSFAGKFVLVQRVSSTGVTTLKKVTLDTSSSATFRVRLHHGRSRLRIVMPTSQTAPGYITGTSKVLTVHR*
Ga0120139_115258323300012019PermafrostVTVKVRPLITLTLLNLSTGTFSTKVAAARSFAGKFVLVQRVSSTGATTLKRVTLDTSSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGTSKVLTVHR*
Ga0137388_1021431853300012189Vadose Zone SoilVKVRPLITLTLVNASNGTFSTKVTAARSFAGKFVLVQRLSSTGLVTLKKVTLDANSSASFRVRLHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGA*
Ga0137388_1178559313300012189Vadose Zone SoilTLVKLSTGSFSTKVTAARSFADKFVLVQRLSSTGVATLKKVTLDASSTATFKIRLSHGRSRLRVVMPTSQAAPGYITGFSNVLMVKR*
Ga0137364_1010363113300012198Vadose Zone SoilTVSGGHWSEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVNQTTGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSAASFRVRLQLGRSRLRVVMPSSQTAPGYITGTSNVVMVSH*
Ga0137364_1085813713300012198Vadose Zone SoilDAVKPTIETAYEATWMNATSPTVTVKVRPLITLTLVNASNGTFSTKVTAARSFAGKFVLVQRLSSTGLVTLKKVTLDANSAASFRVRAHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGA
Ga0137383_1030570623300012199Vadose Zone SoilVKVRPLITLALVSEASGRFSTNVSAARSFAGKFVLVQRLTSTGVSTLRRVTLDANSAASFGVRLHHGRSRLRVVMPSSQTAPGYITGTSNVVTVSH*
Ga0137383_1074095613300012199Vadose Zone SoilATSSTVSVKVRPLITLTLVSQATGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSTASFRVRLQHGRSRLRVVMPTSQTAPGYITGTSNVVSVSA*
Ga0137383_1135556213300012199Vadose Zone SoilTVTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVVTQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSNVLTVNR*
Ga0137382_1009243133300012200Vadose Zone SoilEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVNQTTGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSAASFRVRLQLGRSRLRVVMPSSQTAPGYITGTSNVVSVSH
Ga0137365_1086506913300012201Vadose Zone SoilVKVRPLITLTLVNASNGTFSTKVTAARSFAGKFVLVQRLSSTGLATLKKVTLDANSAASFRVRLHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGA*
Ga0137374_1069313413300012204Vadose Zone SoilTGSLSTKVTAARSFAGKFVRLQRLSSSGVTTQKKVILDANSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVSR*
Ga0137362_1102091413300012205Vadose Zone SoilVKPTIETSYEAKWNGATSSMVTVKVRPLITLTLVNLSIGTFSTKVTAARLLAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR*
Ga0137381_1139180113300012207Vadose Zone SoilVRPLITLTLVNLATGTFSTKVTAARSFAGKFVLVQRLSSTGVTTLKKLTLDTSSSASFRVRLHHGRSRLRAVMPTSQTAPGYITGTSKVLIVPS*
Ga0137376_1015744113300012208Vadose Zone SoilTLALVSQGTGRFSTKVSAGRSFAGKFVLVQRLTSTGVSTLKRVTLDANSAASFRVRLQLGRSRLRVVMPSSQTAPGYITGTSNVVMVSH*
Ga0137376_1130610313300012208Vadose Zone SoilTLTLVSKASGSFSTKVSAARPFAGKFVLVQRLTSTGASTLKRVTLDANSAASFRVRLHLGRSRLRVVMPSSQTAPGYITGTSNVVTVSH*
Ga0137379_1135701123300012209Vadose Zone SoilLVNLSTGSFSTEVMAARSFAGKFVLVQRLSSLGVATLKKVILDASSSATFRVRLHHGRSRLRVVMPTSQTAPGYITARSKVLTVSR*
Ga0137379_1136491813300012209Vadose Zone SoilKSATSSTVSVKVRPLITLTLISQASGRFSTKVSAARSFAGKFVLAQRLTSTGVSTLKRVTLDANSAASFRVRLHLGRSRLRVVMPTSQTAPGYITGTSNVVMVSH*
Ga0137377_1124976213300012211Vadose Zone SoilTGTFSTKVTAARSFAGKFVLVQRLSSLGVATLKKVILDASSSATFRVRLHHGRSRLRVVMPTSQTAPGYITARSKVLTVSR*
Ga0137370_1018513913300012285Vadose Zone SoilAFAALTPVQTVSGGHWSEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVNQTTGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSAASFRVRLQLGRSRLRVVMPSSQTAPGYITGTSNVVMVSH*
Ga0137372_1033475013300012350Vadose Zone SoilPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSQATGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSTASFRVRLQHGRSRLRVVMPTSQTAPGYITGTSNVVTVLH*
Ga0137372_1108040023300012350Vadose Zone SoilVKPTIETSYQARWKSATSSMVTVKVRPLITLTLVNLSTGSFSTKVMAARSFAGKFVLVQRLSSSGVATQKKVVLDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGMSKVLTVSR*
Ga0137367_1110139413300012353Vadose Zone SoilSPSVAVKVRPLISLELVNLASRSFSTTVTGARSFQGKFVLVQRLTSAGALNLKKLKLDASSSATFQVRLHPGRNRLRIVMPSSQTAPGYITGYSKVLSVRR*
Ga0137371_1032763223300012356Vadose Zone SoilKPTIETSYQAKWKSATSSTVTVKVRPQITLTLISQATGRFSTKVSAARPFAGKFVLVQRLTSTGVATLKRVTLDANSAASFRVRLHVGRSRLRVVMPTSQTAPGYITGTSNVVTVRH*
Ga0137371_1039909323300012356Vadose Zone SoilAALATVQTVSGGHWSEVVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSQATGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSTASFRVRLQHGRSRLRVVMPTSQTAPGYITGTSNVVSVSH*
Ga0137371_1109808813300012356Vadose Zone SoilETAYEATWMNATSPIVTVKVRPLITLTLVNASNGTFSTKVTAARSFAGKFVLVRRLSSTGLATLKKVTLDANSAASFRVRLHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGA*
Ga0137384_1150111313300012357Vadose Zone SoilTSYQAKWKSATSSTVTVKVRPLITLTLVNLSTGTFSPKVTAARSFAGKFVLVQRLSSTGVTRLKKVTLDASSSASFRVRLHHGRSRLRVVMPTSQTAPGYVTGMSKVLTVHR*
Ga0137385_1085963013300012359Vadose Zone SoilNLSTRTFSTKVTAAHSFAGKFVLVQRLSSTGVATQKKVILDTSSSATFRVRLHQGRSRLRVVIPTSQTAPGYITGVSKVLTVNR*
Ga0137375_1022781333300012360Vadose Zone SoilLVKLSTGTFSTKVTAARSFAGKFVLVQRLSSTGVATLKKLTLDTSSSATLRVRLHHGRSRLRVVMPTSQTAPGYITGTSKVLTVHR*
Ga0137375_1109906513300012360Vadose Zone SoilIETAYEATWMNATSPTVTVKVRPLITLTLVNASNGTFSTKVTAARSFDGKFVLVQRLSSTGLVTLKKITLDANSAASFRVRLHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGA*
Ga0137361_1069835823300012362Vadose Zone SoilGGHWKDTVKPTIETAYEATWMSSTSSTVTVKVRPLITLMLVNASSGTFSTKVTAARSFAGKFVLVQRLSSTGLVTLKKVTLDANSAASFRVRLHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGS*
Ga0134030_114528813300012387Grasslands SoilTVTVKVRPMITQTLINLSTGRFSTKVTAARSFAGKFVLVQRLSSTGVKTLKKVTLDAGSSATFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVMTVSR*
Ga0134043_106719113300012392Grasslands SoilEAKWKSATSSTVAVKVRPLITLTLVNLSTGTFSTKVTAARSFAGKFVLVQRLSSSGVATLKKVILDTSSSATFRTRLHQGRSRLRVVMPTSQTAPGYITGMSKVLTVSR*
Ga0134044_102431413300012395Grasslands SoilSSTVTVKVRPMITLALVNLSSGAFSTKVTAARSFAGKFVLVQRLSSSGVVTLKKVTLDANSSATFRVRLHHGRSRLRVVMPSAQTAPGYITA*
Ga0134045_131415823300012409Grasslands SoilYEAKWKSEISSTVTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR*
Ga0137373_1104081913300012532Vadose Zone SoilGQWTEVVKPTVETSYEANWMSTTSSTVTVKVRPMITLALVNLSSGAFSTKVTAARSFAGKFVLVQRLSSSGVLTLKKVTLDANSSATFRARLHHGRSRLRVVMPSSQTARGYITGMSNVLTVRR*
Ga0137395_1027867123300012917Vadose Zone SoilNPTRVFTGTVKVRPLITLTLVNASNGTFSTKVTAARSFAGKFVLVQRLSSTGLVTLKKVTLDANSAASFRVRLHQGRSRLRVVMPSSQTAPGYITGTSNVLTVGS*
Ga0134087_1042395723300012977Grasslands SoilQWTDGVKPTIETSYQAKWKSATSSTVTVKVRPLITLTLVNLATGTFSTKVTAARAFAGKFVLVQRLSSTGVTPLKKVTLDASSSASFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVLTVHR*
Ga0134072_1034376213300015357Grasslands SoilVSGGHWSEMVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSQATGRFSTKVSAGRSFAGKFVLVQRLTSTGVATLKRVTLDANSAASFRVRLHVGRSRLRVVMPTSQTAPGYITGTSNVVSVLH*
Ga0066667_1017144323300018433Grasslands SoilLVTLTLVNLSTGSFSTKVTAARSFAGKFVLVQRLGSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVSR
Ga0066667_1111892013300018433Grasslands SoilSTGTFSTKVTAARSFAGKFVLVQRLSSMGVRTLKKVTLDTSSSASFRVRLHHGRSRLRVVMPTSQTAPGYITGMSKVLTVHR
Ga0066667_1227511713300018433Grasslands SoilITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR
Ga0066662_1205071623300018468Grasslands SoilETSYQAKWKSATSSQVTVKVRPLITLTLVDLSTGSFSTKVTAARSFAGKFVLVQRLRSTGVTTLKKVTLDAGSSASFRVRLHHGRSRLRVVMPTSQTTPGYITGMSKVLVVHR
Ga0066662_1252347613300018468Grasslands SoilQATWKNATSSTVTVKVRPLIALTLVKLATGTFSIKVTAARSFAGKFVNVQRLTSTGALTLKKLTLDSNSSATFRVRLHAGRNRLRAVMPTSQTMPGYISGISKVLTVTR
Ga0137408_112184113300019789Vadose Zone SoilRWSSRRSKPPTRRKWKSATSSTVSVKVRPLITLTLVSQATGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSAASFSVRLHHGRSRLRVVMPTSQTAPGYITGTSNVVSVSH
Ga0207684_1019375313300025910Corn, Switchgrass And Miscanthus RhizosphereTVTVKVRPLITLTLVKLATGSFSTKVTAARSFAGKFVNVQRLTTTGALTLKKVILDANSSATFRVRLHPGRNRLRVLMPTSQTTPGYISGMSKVLTVTR
Ga0207646_1005239713300025922Corn, Switchgrass And Miscanthus RhizosphereVSVKVRPLITLTLVSQASGRFSTKVSAARSFAGKFVLVQRLSSTGVSTLKRVTLDPNSAASFAVRLHHGRSRLRVVMPTSQTAPGYITGTSNVLTVSH
Ga0209238_124251813300026301Grasslands SoilVKPTIETSYQAKWKSATSSTVSVKVRPLITLTLVSQATGRFSTKVSAARSFAGKFVLVQRLTSTGVSTLKRVTLDANSAASFSVRLHHGRSRLRVVMPTSQTAPGYITGTSNVVSVSH
Ga0209468_104008533300026306SoilTSYQAHWKGATSRTVTVKVRPMITLSLVSLANGTFSTKVTAARAFTGKFVNVQRLTRFGALTVKKVKLDSSSSAIFHVRLHSGGNRLRVVMPTAQAAPGYIIGVSKVLRVTK
Ga0209378_124695913300026528SoilTSYEAKWKSEISSTVTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSGVATQKKVILDTNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGVSKVLTVNR
Ga0209058_113057713300026536SoilVKWKSATSSTVTVKVRPLITLTLVNVSAGTFSTKVAAARSFAGKFVLVQRLSSAGVATLKKVTLNTSSSATFRVRLHHGRSRLRVVMPTSQTAPGYIS
Ga0209056_1032463513300026538SoilITLTLINLSTGRFSTKVTAARSFAGKFVLVQRVTSTGVTTLKKVTLDAGSTATFRVRLHHRRSRLRVVMPTSQTAPGYITGKSKVLTVSF
Ga0209283_1076650113300027875Vadose Zone SoilSSTVTVKVRPLITLTLVNLSTGTFSTKVTAARLFAGKFVLVQRLSSSVVATQKKVILDSNSSATFRVRLHQGRSRLRVVMPTSQTAPGYITGASKVLTVNR
Ga0209590_1068446413300027882Vadose Zone SoilVTVKVRPMITLTLVNLASGTFSTKVTGARSFQGKFVLVERLSSTGATTMKKVTLDANSSATFTVRLHHGRNRLRVVMPTSQTEPGYITGISNVLTVTR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.