NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104796

Metagenome / Metatranscriptome Family F104796

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104796
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 38 residues
Representative Sequence MDNDEATTSNDEGDRSTGDGESWLAEQARLVLLEDGS
Number of Associated Samples 78
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 91.84 %
% of genes near scaffold ends (potentially truncated) 12.00 %
% of genes from short scaffolds (< 2000 bps) 77.00 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (90.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(40.000 % of family members)
Environment Ontology (ENVO) Unclassified
(46.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.46%    β-sheet: 0.00%    Coil/Unstructured: 81.54%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13561adh_short_C2 27.00
PF00463ICL 27.00
PF02142MGS 15.00
PF13714PEP_mutase 10.00
PF00126HTH_1 3.00
PF00561Abhydrolase_1 3.00
PF02771Acyl-CoA_dh_N 2.00
PF11084DUF2621 2.00
PF03466LysR_substrate 2.00
PF00106adh_short 1.00
PF14206Cys_rich_CPCC 1.00
PF02325YGGT 1.00
PF00441Acyl-CoA_dh_1 1.00
PF02770Acyl-CoA_dh_M 1.00
PF01636APH 1.00
PF01016Ribosomal_L27 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2224Isocitrate lyaseEnergy production and conversion [C] 27.00
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 4.00
COG0211Ribosomal protein L27Translation, ribosomal structure and biogenesis [J] 1.00
COG0762Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT familyPosttranslational modification, protein turnover, chaperones [O] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.00 %
UnclassifiedrootN/A9.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908016|OU_2_1_1_newblercontig80271All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300005181|Ga0066678_10149301All Organisms → cellular organisms → Bacteria1461Open in IMG/M
3300005184|Ga0066671_10612220All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300005552|Ga0066701_10344574All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300005553|Ga0066695_10071646All Organisms → cellular organisms → Bacteria2094Open in IMG/M
3300005554|Ga0066661_10002767All Organisms → cellular organisms → Bacteria7591Open in IMG/M
3300005557|Ga0066704_10002258All Organisms → cellular organisms → Bacteria8860Open in IMG/M
3300005578|Ga0068854_100041402All Organisms → cellular organisms → Bacteria3254Open in IMG/M
3300005586|Ga0066691_10221568All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1106Open in IMG/M
3300005598|Ga0066706_11393961All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300006031|Ga0066651_10635587Not Available569Open in IMG/M
3300006800|Ga0066660_10314401All Organisms → cellular organisms → Bacteria1256Open in IMG/M
3300006854|Ga0075425_101705502All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300009012|Ga0066710_100898838All Organisms → cellular organisms → Bacteria1363Open in IMG/M
3300009038|Ga0099829_10477128All Organisms → cellular organisms → Bacteria1034Open in IMG/M
3300009038|Ga0099829_10868346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium749Open in IMG/M
3300009038|Ga0099829_11364564All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300009088|Ga0099830_11541984All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300009089|Ga0099828_10860298All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300009090|Ga0099827_10417607All Organisms → cellular organisms → Bacteria1148Open in IMG/M
3300009090|Ga0099827_10468871All Organisms → cellular organisms → Bacteria1080Open in IMG/M
3300009137|Ga0066709_100676577All Organisms → cellular organisms → Bacteria1481Open in IMG/M
3300010399|Ga0134127_10244201All Organisms → cellular organisms → Archaea → Euryarchaeota1697Open in IMG/M
3300010399|Ga0134127_11742480Not Available698Open in IMG/M
3300010401|Ga0134121_10769207All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300011998|Ga0120114_1000090All Organisms → cellular organisms → Bacteria32129Open in IMG/M
3300012096|Ga0137389_11427524Not Available588Open in IMG/M
3300012200|Ga0137382_10213462All Organisms → cellular organisms → Bacteria1329Open in IMG/M
3300012200|Ga0137382_10263674Not Available1196Open in IMG/M
3300012200|Ga0137382_10449270All Organisms → cellular organisms → Bacteria912Open in IMG/M
3300012203|Ga0137399_10144677All Organisms → cellular organisms → Bacteria1892Open in IMG/M
3300012203|Ga0137399_10217384All Organisms → cellular organisms → Bacteria1557Open in IMG/M
3300012206|Ga0137380_10308157All Organisms → cellular organisms → Bacteria1417Open in IMG/M
3300012208|Ga0137376_10065863All Organisms → cellular organisms → Bacteria3001Open in IMG/M
3300012208|Ga0137376_10189290All Organisms → cellular organisms → Bacteria1778Open in IMG/M
3300012208|Ga0137376_10393822All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300012209|Ga0137379_10787624All Organisms → cellular organisms → Bacteria856Open in IMG/M
3300012211|Ga0137377_10061284All Organisms → cellular organisms → Bacteria3503Open in IMG/M
3300012211|Ga0137377_11255408All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300012285|Ga0137370_10013019All Organisms → cellular organisms → Bacteria4029Open in IMG/M
3300012285|Ga0137370_10948209All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300012349|Ga0137387_11063846All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300012362|Ga0137361_10408173All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300012363|Ga0137390_10846033All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300012410|Ga0134060_1506876Not Available546Open in IMG/M
3300012683|Ga0137398_11195979All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300012685|Ga0137397_10061553All Organisms → cellular organisms → Bacteria2708Open in IMG/M
3300012918|Ga0137396_10116297All Organisms → cellular organisms → Bacteria1924Open in IMG/M
3300012922|Ga0137394_10403904All Organisms → cellular organisms → Bacteria1165Open in IMG/M
3300012925|Ga0137419_10057676All Organisms → cellular organisms → Bacteria2533Open in IMG/M
3300012925|Ga0137419_10827670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium759Open in IMG/M
3300012927|Ga0137416_10187162All Organisms → cellular organisms → Bacteria1652Open in IMG/M
3300012927|Ga0137416_10393611All Organisms → cellular organisms → Bacteria1172Open in IMG/M
3300014157|Ga0134078_10278170All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300015241|Ga0137418_10033537All Organisms → cellular organisms → Bacteria4746Open in IMG/M
3300015241|Ga0137418_10137218All Organisms → cellular organisms → Bacteria2166Open in IMG/M
3300018028|Ga0184608_10138917All Organisms → cellular organisms → Bacteria1041Open in IMG/M
3300018061|Ga0184619_10021660All Organisms → cellular organisms → Bacteria2644Open in IMG/M
3300018482|Ga0066669_10128547All Organisms → cellular organisms → Bacteria1820Open in IMG/M
3300018482|Ga0066669_12366758All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300019885|Ga0193747_1001584All Organisms → cellular organisms → Bacteria6077Open in IMG/M
3300020004|Ga0193755_1133748All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300020015|Ga0193734_1048874Not Available780Open in IMG/M
3300020018|Ga0193721_1043104All Organisms → cellular organisms → Bacteria1192Open in IMG/M
3300020022|Ga0193733_1042681All Organisms → cellular organisms → Bacteria1282Open in IMG/M
3300021080|Ga0210382_10463266All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300023058|Ga0193714_1003167All Organisms → cellular organisms → Bacteria2694Open in IMG/M
3300025885|Ga0207653_10135770All Organisms → cellular organisms → Bacteria896Open in IMG/M
3300026301|Ga0209238_1071227All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300026309|Ga0209055_1056703All Organisms → cellular organisms → Bacteria1671Open in IMG/M
3300026310|Ga0209239_1155234All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300026310|Ga0209239_1182765All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300026317|Ga0209154_1003249All Organisms → cellular organisms → Bacteria8860Open in IMG/M
3300026326|Ga0209801_1158776All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300026327|Ga0209266_1264530All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300026328|Ga0209802_1096456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1338Open in IMG/M
3300026529|Ga0209806_1008617All Organisms → cellular organisms → Bacteria5582Open in IMG/M
3300027643|Ga0209076_1183886All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300027748|Ga0209689_1017959All Organisms → cellular organisms → Bacteria4449Open in IMG/M
3300027875|Ga0209283_10033821All Organisms → cellular organisms → Bacteria3199Open in IMG/M
3300027882|Ga0209590_10281821All Organisms → cellular organisms → Bacteria1065Open in IMG/M
3300027882|Ga0209590_10801603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium598Open in IMG/M
3300028536|Ga0137415_10772523All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300028711|Ga0307293_10055378All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300028778|Ga0307288_10313689All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300028784|Ga0307282_10461082All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300028784|Ga0307282_10485066Not Available600Open in IMG/M
3300028824|Ga0307310_10100799All Organisms → cellular organisms → Bacteria1284Open in IMG/M
3300028878|Ga0307278_10251732All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300028881|Ga0307277_10023002All Organisms → cellular organisms → Bacteria2448Open in IMG/M
3300028881|Ga0307277_10262287All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300028881|Ga0307277_10279156All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300028884|Ga0307308_10002124All Organisms → cellular organisms → Bacteria8117Open in IMG/M
3300031058|Ga0308189_10106606All Organisms → cellular organisms → Bacteria898Open in IMG/M
3300032180|Ga0307471_101862569All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300032180|Ga0307471_103263383All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium575Open in IMG/M
3300032180|Ga0307471_103335584All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300034644|Ga0370548_124685All Organisms → cellular organisms → Bacteria541Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil40.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil17.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil7.00%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.00%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.00%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → 1.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908016Sample 642EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011998Permafrost microbial communities from Nunavut, Canada - A30_35cm_6MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012410Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020015Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1EnvironmentalOpen in IMG/M
3300020018Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2EnvironmentalOpen in IMG/M
3300020022Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300023058Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028778Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034644Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
OU_013223602124908016MDNDEISTNDESDTTTSEGESWLAEQARLIWLEDGS
Ga0066678_1014930113300005181SoilLTMDNDDVTTTNDDLYSGADDPGESWLAEQARLVLLEDGG*
Ga0066671_1061222023300005184SoilVTMDNDDVVISNDEADGSPDETGESWLAEQARLVLLEDGS*
Ga0066701_1034457423300005552SoilMDDDEGAITYDGTDRGPEDRAESWLAEQARLLLLEDGW*
Ga0066695_1007164623300005553SoilMDDDQAASTNDEGDRNTGEGESWLAEQARLVLLEDGS*
Ga0066661_1000276753300005554SoilMDNDDVTTTNDDLYPGADDPGESWLAEQARLVLLEDGG*
Ga0066704_10002258113300005557SoilMDNDDVTTTNDDLYSRADDPGESWLAEQARLVLLEDG*
Ga0068854_10004140253300005578Corn RhizosphereMDNDDVLMSNEADGSRDENGESWLAEQARLVLLEDGS*
Ga0066691_1022156823300005586SoilMDNDDVTTTNDDLYPGADDPGESWLAEQARLVLLEDG*
Ga0066706_1139396113300005598SoilMDNDDVTVTNDEGEAPADRGESWLAEQARLVLLEDGS*
Ga0066651_1063558723300006031SoilMDNDDATTANDDVELNAGDSESWLAEQARLILLEDGG*
Ga0066660_1031440133300006800SoilMDNDAVTTTNDDLYPGADDPGESWLAEQARLVLLEDG*
Ga0075425_10170550223300006854Populus RhizosphereVDNDDVTLDNNDSNTDDPGESWLAEQARLVLLEDGR*
Ga0066710_10089883823300009012Grasslands SoilMDNDEATTSNDEGDRSTGDGESWLAEQARLVLLEDGS
Ga0099829_1047712823300009038Vadose Zone SoilMDDDEAAGAYDEVDREAESAESWLAEQARLVLIEDGS*
Ga0099829_1086834623300009038Vadose Zone SoilMDIDEIATTNDEAIGITGDGESWLAEQARLVLLEDGS*
Ga0099829_1136456423300009038Vadose Zone SoilMDNDEAATTYDELNGEAEIGESWLAEQARLVLAEDGA*
Ga0099830_1154198423300009088Vadose Zone SoilMDNDEAATTYDELNGEADIGESWLAEQARLVLAEDGA*
Ga0099828_1086029823300009089Vadose Zone SoilMDNDEAAMTNDEVDRDSELGESWLAEQARLVLAEDGA*
Ga0099827_1041760723300009090Vadose Zone SoilVTVDDDEAAITDEDADRGSDDRGESWLAEQARLVLLEDGS*
Ga0099827_1046887113300009090Vadose Zone SoilMDNDEAETTYDELNGEAEIGESWLAEQARLVLAEDGA*
Ga0066709_10067657723300009137Grasslands SoilMDNDEATTSNDEGDRSTGDGESWLAEQARLVLLEDGS*
Ga0134127_1024420123300010399Terrestrial SoilMTMDDDKTTTTNEDANRSSDNGAESWLAEQARLVLLEGI*
Ga0134127_1174248023300010399Terrestrial SoilMDDDKATTTTDETDRGPDTRRESWLAEQARLVLLEGI*
Ga0134121_1076920733300010401Terrestrial SoilMDNDEGVTNNDDLENNAGGESWLAEQARLILLEDGI*
Ga0120114_1000090313300011998PermafrostMDNDDVPANNDKVDGDTGGESWLAEQARLILLEDGS*
Ga0137389_1142752423300012096Vadose Zone SoilMDDDEAAGAYDEVDRQAERAESWLAEQARLVLLEDGS*
Ga0137382_1021346223300012200Vadose Zone SoilMDNDDATTANDDVELNAGDSESWLAEQARLILLED
Ga0137382_1026367423300012200Vadose Zone SoilMDNDDATTANDDLELNPGDAESWLAEQARLVLLEDGA*
Ga0137382_1044927023300012200Vadose Zone SoilMDNDDATTANDDVELNSSDAESWLAEQARLVLLEDGS*
Ga0137399_1014467723300012203Vadose Zone SoilMDDDDVTTYDPDSTGEDAGESWLAEQARLVLLEDGS*
Ga0137399_1021738423300012203Vadose Zone SoilMDDDDGITYDNVDSTADDSGESWLAEQARLVLLEDGS*
Ga0137380_1030815723300012206Vadose Zone SoilMDIDETATTNDEAVGITGDGESWLAEQARLVLLEDGS*
Ga0137376_1006586333300012208Vadose Zone SoilMDNDEGTRDDEGERSTDDGESWLAEQARLVLLEDGS*
Ga0137376_1018929023300012208Vadose Zone SoilMDNDDVTVTNDEGEAPADRSESWLAEQARLVLLEDGS*
Ga0137376_1039382223300012208Vadose Zone SoilMDNDDATTADDDVELNAGDSESWLAEQARLILLEDGG*
Ga0137379_1078762413300012209Vadose Zone SoilEGGVTMDIDETATTNDEAVGITGDGESWLAEQARLVLLEDGS*
Ga0137377_1006128453300012211Vadose Zone SoilMDNDDVTVTNDEGEAPADRTESWLAEQARLVLLEDGS*
Ga0137377_1125540823300012211Vadose Zone SoilMDNDEATTSNDEGERSTDDGESWLAEQARLVLLEDGS*
Ga0137370_1001301913300012285Vadose Zone SoilMDNDETTTSEGTVTDGGDAGESWLAEQARLVLLEDGR*
Ga0137370_1094820913300012285Vadose Zone SoilMDNDDATTADDDGELNVGDSESWLAEQARLVLLEDGA*
Ga0137387_1106384623300012349Vadose Zone SoilMDDDQAASTNDEGDRNTGEGESWLAEQARLVLLEDGG*
Ga0137361_1040817313300012362Vadose Zone SoilMDNDEVTVANDEGEGPADRGESWLAEQARLVLLEDGS*
Ga0137390_1084603323300012363Vadose Zone SoilMMDIDETATTNDEAIGITGDGESWLAEQARLVLLEDGS*
Ga0134060_150687623300012410Grasslands SoilMDNDEATTSNDEGDRNTGEGESWLAEQARLVLLEDGS*
Ga0137398_1119597913300012683Vadose Zone SoilMDNDDVLISNDEADGSRDENGESWLAEQARLVLLEDGA*
Ga0137397_1006155353300012685Vadose Zone SoilMDDDDDATTYDNVDSTADEGGESWLAEQARLVLLEDGS*
Ga0137396_1011629743300012918Vadose Zone SoilMDDDGITYDNVDSTADDSGESWLAEQARLVLLEDGS*
Ga0137394_1040390423300012922Vadose Zone SoilMDDDDAITYDNVDSTADNSGESWLAEQARLVLLEDGS*
Ga0137419_1005767623300012925Vadose Zone SoilMDDDDATTYDVDSTADDSGEGWLAEQARLVLLEDGS*
Ga0137419_1082767013300012925Vadose Zone SoilEGGVTMDDDDATTYDPDPTGEDGGESWLAEQARLVLLEDGS*
Ga0137416_1018716233300012927Vadose Zone SoilMDNDDVTVTNDEGEGPTEKGESWLAEQARLVLLEDGG*
Ga0137416_1039361123300012927Vadose Zone SoilMDDDDAITYDNVDSTADDSGESWLAEQARLVLLEDGS*
Ga0134078_1027817023300014157Grasslands SoilMDDDEGVMNYDDLDNDARGESWLAEQARLILLEDGS*
Ga0137418_1003353783300015241Vadose Zone SoilSRREGGVTMDDDDATTYDVDSTADDSGEGWLAEQARLVLLEDGS*
Ga0137418_1013721833300015241Vadose Zone SoilMDDDDATTYDPDPTGEDGGESWLAEQARLVLLEDGS*
Ga0184605_1021779423300018027Groundwater SedimentMDDDDVTTYDEADNGSGDGAESWLAEQARLVLLEDGS
Ga0184608_1013891723300018028Groundwater SedimentMDNDDVLISNDDADGSRDENGESWLAEQARLVLLEDG
Ga0184619_1002166023300018061Groundwater SedimentMDNDEAPSTNDDVDRDSSHGESWLAEQARLVLLEDGS
Ga0066669_1012854723300018482Grasslands SoilMDNDDVLISNDEADGSRDENGESWLAEQARLVLLEDGS
Ga0066669_1236675823300018482Grasslands SoilVTVDDDENAITADADIDDGESWLAEQARLVLLEDGS
Ga0193747_100158493300019885SoilMTMDDDDTAGTYDEIDRGPEGAEESWLAEQARLVLLEDGS
Ga0193755_113374813300020004SoilMTMDDDETAGTYDEIDRGPEGAEESWLAEQARLVLLEDG
Ga0193734_104887423300020015SoilRQRRRSDMDNDDVLISNDEADGSRDENGESWLAEQARLVLLEDGS
Ga0193721_104310433300020018SoilMDNDDVPANNDKVDNDTGGESWLAEQARLILLEDGC
Ga0193733_104268113300020022SoilRGRSDMDNDDVLISNDEADGSRDENGESWLAEQARLVLLEDGS
Ga0210382_1046326613300021080Groundwater SedimentMDDDETPGMSDDVERGPDDGQESWLAEQARLVLLEDGS
Ga0193714_100316743300023058SoilMDNDEGVTNNDELDNDAGGESWLAEQARLILLEDGS
Ga0207653_1013577023300025885Corn, Switchgrass And Miscanthus RhizosphereMDNDEGPITSDEVDRNIGDGETWLAEQARLVLLEDGS
Ga0209238_107122723300026301Grasslands SoilMTMDDHETAGTFDEVDRGPDQNQESWLAEQARLVLLEDGR
Ga0209055_105670323300026309SoilMDNDDVTTTNDDLYSRADDPGESWLAEQARLVLLEDGG
Ga0209239_115523423300026310Grasslands SoilMDTDEDAITYDNVDSTADNSAESWLAEQARLVLLEDGS
Ga0209239_118276523300026310Grasslands SoilMDDDDATTANDDVELNSGDAESWLAEQARLVLLEDGS
Ga0209154_100324953300026317SoilMDNDDVTTTNDDLYSRADDPGESWLAEQARLVLLEDG
Ga0209801_115877633300026326SoilRREGGLTMDNDDVTTTNDDLYSGADDPGESWLAEQARLVLLEDGG
Ga0209266_126453023300026327SoilMDDDQAASTNDEGDRNTGEGESWLAEQARLVLLEDGS
Ga0209802_109645623300026328SoilMDDDEGAITYDGTDRGPEDRAESWLAEQARLLLLEDGG
Ga0209806_100861793300026529SoilMDNDDVTTTNDDLYSGADDPGESWLAEQARLVLLEDGG
Ga0209076_118388613300027643Vadose Zone SoilMDNDDVTVTNDEGEGPTEKGESWLAEQARLVLLEDGG
Ga0209689_101795923300027748SoilMDNDDVTTTNDDQYSEAEDPGESWLAEQARLVLLEDG
Ga0209283_1003382153300027875Vadose Zone SoilMDIDEPATTNDEAVGITGDGESWLAEQARLVLLEDGS
Ga0209590_1028182123300027882Vadose Zone SoilVTVDDDEAAITDEDADRGSDDRGESWLAEQARLVLLEDGS
Ga0209590_1080160323300027882Vadose Zone SoilMMDNDGAAATYDEVDRDPDSGAEESWLAEQARLVLLEDGN
Ga0137415_1077252323300028536Vadose Zone SoilMDDDDAITYDNVDSTADDSGESWLAEQARLVLLEDGS
Ga0307293_1005537823300028711SoilMDNDNDDVTTYETDSASGDGAESWLAEQARLVLLEDGS
Ga0307313_1005553633300028715SoilMDNDDDVTTYETDSASGDGAESWLAEQARLVLLEDGS
Ga0307288_1031368913300028778SoilMDNDNDDVTTYETDSASGDGAESWLAEQARLVLLED
Ga0307282_1046108223300028784SoilMDDNETSTTNNEGDPDTGKSESWLAEQARLVLLEDGS
Ga0307282_1048506623300028784SoilRQRRRSEMDDNETSTTNNGGDPDTGRSESWLAEQARLILLEDGC
Ga0307310_1010079933300028824SoilVTMDNDNDDVTTYETDSASGDGAESWLAEQARLVLLEDGS
Ga0307278_1025173233300028878SoilMDQEDVLINNNEMDGENNTESWLAEQARLVLLEDGG
Ga0307277_1002300253300028881SoilVTVDNDDVLISNDEIDARSDDNAESWLAEQARLVLLEDGG
Ga0307277_1026228723300028881SoilMDGDDVLISNDEVDSSDDNNESWLAEQARLVLLEDGG
Ga0307277_1027915623300028881SoilMDNDDATTANDDVELNAGDGESWLAEQARLILLEDGG
Ga0307308_1000212423300028884SoilMDYDDATTANDDLEPNAGDGESWLAEQARLILLEDGG
Ga0308189_1010660623300031058SoilMDNDEGVTNNDELDNDVGGEGWLAEQARLILLEDGS
Ga0307471_10186256923300032180Hardwood Forest SoilMDDDEGVAKYDDIDGDEGGESWLAEQARLILVEDGG
Ga0307471_10326338323300032180Hardwood Forest SoilMDDDETATTNDEDAGRPRDGESWLAEQARLVLLEDGS
Ga0307471_10333558423300032180Hardwood Forest SoilVTMDNDDVTVTNDEGEAPTDKGESWLAEQARLVLLEDGS
Ga0370548_124685_3_1133300034644SoilMDNDDVLISNDEADGSRDENGESWLAEQARLVLLEDG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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