NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104747

Metagenome / Metatranscriptome Family F104747

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104747
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence MTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDTKPNLTVLNNRT
Number of Associated Samples 78
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 81.00 %
% of genes near scaffold ends (potentially truncated) 32.00 %
% of genes from short scaffolds (< 2000 bps) 80.00 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Predicted Viral (43.000 % of family members)
NCBI Taxonomy ID 10239 (predicted)
Taxonomy All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(23.000 % of family members)
Environment Ontology (ENVO) Unclassified
(74.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1DelMOSum2010_100559343
2DelMOSum2010_100981843
3DelMOSum2010_101357652
4OpTDRAFT_100783771
5OpTDRAFT_101077261
6BpDRAFT_103608702
7BBAY92_101531501
8JGI20154J14316_100728294
9JGI20157J14317_100077854
10JGI20157J14317_100785203
11GOS2228_10404234
12JGI24927J35514_10022853
13Ga0065861_12167922
14Ga0074649_10892773
15Ga0076924_11157914
16Ga0075466_10446504
17Ga0075467_102163942
18Ga0070754_100562943
19Ga0075468_100427461
20Ga0070747_12269871
21Ga0070747_13047511
22Ga0070745_10908832
23Ga0070752_12693683
24Ga0070753_11264591
25Ga0099847_10192084
26Ga0099847_10301972
27Ga0099847_11055412
28Ga0102945_10890922
29Ga0102963_11563794
30Ga0115549_10450594
31Ga0115550_10545683
32Ga0115562_12586892
33Ga0115102_107595823
34Ga0136655_10767113
35Ga0129324_100792121
36Ga0129324_100874233
37Ga0118731_1004096443
38Ga0118733_1012261984
39Ga0151677_10068803
40Ga0129327_100232883
41Ga0129327_104567711
42Ga0182045_12572002
43Ga0180120_101358061
44Ga0180120_102201763
45Ga0180120_104079851
46Ga0181391_10529453
47Ga0181398_10111352
48Ga0181397_10025217
49Ga0181389_10055244
50Ga0181400_11345832
51Ga0181420_12007161
52Ga0181424_101126984
53Ga0181424_101873443
54Ga0181552_104604153
55Ga0181552_104850223
56Ga0181607_100989503
57Ga0181607_102069704
58Ga0180437_107965113
59Ga0181600_104043473
60Ga0181601_102194994
61Ga0180433_108517642
62Ga0181561_100823323
63Ga0181561_101246053
64Ga0206128_100078150
65Ga0206128_10561573
66Ga0206128_10792292
67Ga0181596_103177111
68Ga0206131_100418655
69Ga0206131_103610062
70Ga0206130_101473484
71Ga0206130_102371931
72Ga0211677_100234041
73Ga0211576_101894574
74Ga0206677_1000167927
75Ga0206682_104142502
76Ga0213868_100452101
77Ga0222716_100536634
78Ga0212030_10378492
79Ga0212030_10535803
80Ga0212023_10154573
81Ga0196903_10228152
82Ga0224508_101687433
83Ga0255773_103706801
84Ga0208148_10063227
85Ga0208303_10262363
86Ga0208303_10262532
87Ga0208303_10499803
88Ga0208660_11209961
89Ga0209138_10406303
90Ga0209405_10263303
91Ga0209504_10907513
92Ga0208898_11244101
93Ga0209652_11601101
94Ga0208545_10903233
95Ga0209307_10018904
96Ga0209119_11017303
97Ga0228634_10631504
98Ga0307379_102848303
99Ga0307984_10010936
100Ga0315320_104526173
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
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Variant

5101520253035404550MTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDTKPNLTVLNNRTSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
66.0%34.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Marine Sediment
Marine
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Marine
Marine
Seawater
Salt Marsh
Marine
Marine
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Freshwater And Marine
Marine
Seawater
Sediment
Pond Water
Saline Water And Sediment
Hypersaline Lake Sediment
Soil
Macroalgal Surface
23.0%8.0%4.0%3.0%11.0%3.0%6.0%7.0%4.0%3.0%3.0%8.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1005593433300000101MarineMTLDEAKQTLMLELVRATQGNYSIEELLELYYFIIEPEDDGKPNLTVLNNRT*
DelMOSum2010_1009818433300000101MarineMTVTEAKQTLMLELVRATAGNYNVEELLELYYFMIEPEEDIKPTLTVLKRGE*
DelMOSum2010_1013576523300000101MarineMTVTEAKQTLMLELVRATAGNYSIEELLELYYFMIEPEEDIKPTLTVLKRGE*
OpTDRAFT_1007837713300000928Freshwater And MarineLMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDVKPNLTVLNNRT*
OpTDRAFT_1010772613300000928Freshwater And MarineMTLGEAKQTLMLELVRATQGNYNVEELLELYYFIIEPEEDVKPNLTVLNN
BpDRAFT_1036087023300000930Freshwater And MarineMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDVKPNLTVLNNRT*
BBAY92_1015315013300000947Macroalgal SurfaceVTLTEAKQTLMLELVRATAGNYSIEELLELYYFMIEPEEDTKPTLTVLKTGE*
JGI20154J14316_1007282943300001348Pelagic MarineATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT*
JGI20157J14317_1000778543300001352Pelagic MarineMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEEIKPTLTVLSKKEVDKSC*
JGI20157J14317_1007852033300001352Pelagic MarineMTLDEAKQTLMLELVRATAGNYSIEELLELYYFIIEPEEDVKPNLTVLNNRT*
GOS2228_104042343300001948MarineMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGE*
JGI24927J35514_100228533300002524MarineMTLDEAKQTLMLELVRATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT*
Ga0065861_121679223300004448MarineMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMTEPEEETKPTLTVLKTGD*
Ga0074649_108927733300005613Saline Water And SedimentMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEDEKPKLTVLKTGE*
Ga0076924_111579143300005747MarineMTLGEAKQTLMLELVRATQGNYNVEELLELYYFIIEPEEDVKPNLTVLNNRT*
Ga0075466_104465043300006029AqueousMTLDEAKQTLMLELVRATQGNYSIEELLELYYFIIEPEEDVKPNLTVLKNRT*
Ga0075467_1021639423300006803AqueousMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLNNRT*
Ga0070754_1005629433300006810AqueousMTLDEAKQTLILELVRATAGNYNIEELLELYYFIIEPEEDVKPNLTVLNNRT*
Ga0075468_1004274613300007229AqueousMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLN
Ga0070747_122698713300007276AqueousELVRATAGNYSIEELLELYYFMTEPEEETKPTLTVLKTGD*
Ga0070747_130475113300007276AqueousEAKQTLMLELVRATQGNYSIEELLELYYFIIEPEDDGKPNLTVLNNRT*
Ga0070745_109088323300007344AqueousMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDIKPTLTVLKTGE*
Ga0070752_126936833300007345AqueousQTLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE*
Ga0070753_112645913300007346AqueousMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE*
Ga0099847_101920843300007540AqueousMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGD*
Ga0099847_103019723300007540AqueousMTVADAKQVLVLEIVRATAGNYTVEEVLELYYFMIEPEEDIKPTLTVLSTK*
Ga0099847_110554123300007540AqueousMTLIEAKQTLMLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLNNRT*
Ga0102945_108909223300007609Pond WaterMTTAEAKQTLMLELIRATGGIYGVEELIELFYFIIEPEEEAGATLKLIRKEQ*
Ga0102963_115637943300009001Pond WaterMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMTEPEEDIKPTLTVFKTGE*
Ga0115549_104505943300009074Pelagic MarineMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMIEPEEETKPTLTVLKTGE*
Ga0115550_105456833300009076Pelagic MarineMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDTKPNLTVLNNRT*
Ga0115562_125868923300009434Pelagic MarineMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMTEPEEDTKPNLTVLNNRT*
Ga0115102_1075958233300009606MarineMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDNKPTLTVLNRTQT*
Ga0136655_107671133300010316Freshwater To Marine Saline GradientMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGE*
Ga0129324_1007921213300010368Freshwater To Marine Saline GradientKQVLMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGE*
Ga0129324_1008742333300010368Freshwater To Marine Saline GradientMTVTEAKQTLMLELVRATAGNYNVEELLELYYFMIEPEEDIKPTLTVLKR
Ga0118731_10040964433300010392MarineMTLGETKQTLMLELVRATQGNYNVEELLELYYFIIEPEDDGKPNLTVLNNRT*
Ga0118733_10122619843300010430Marine SedimentMTLGETKQTLMLELVRATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT*
Ga0151677_100688033300011258MarineMTVTEAKQTLMLELVRATAGNYSIEELLELYYFMIEPEEDIKPTLTVLKTGE*
Ga0129327_1002328833300013010Freshwater To Marine Saline GradientMTVAEAKQVLVLEIVRATAGNYTVEEVLELYYFMIEPEEDIKPTLTVLSTK*
Ga0129327_1045677113300013010Freshwater To Marine Saline GradientMTLVEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGD*
Ga0182045_125720023300016726Salt MarshMTLTESKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKIGE
Ga0180120_1013580613300017697Freshwater To Marine Saline GradientMTVAEAKQVLVLEIVRATAGNYTVEEVLELYYFMIEPEEDIKPTLTVLSTK
Ga0180120_1022017633300017697Freshwater To Marine Saline GradientMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGD
Ga0180120_1040798513300017697Freshwater To Marine Saline GradientEAKQTLMLELVRATQGNYSIEELLELYYFIIEPEDDGKPNLTVLNNRT
Ga0181391_105294533300017713SeawaterMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDSKPTLTVLNNRT
Ga0181398_101113523300017725SeawaterMTLGEAKQTLMLELVRATAGNYNIEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0181397_100252173300017744SeawaterMTLDEAKQTLMLELVRATAGNYNIEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0181389_100552443300017746SeawaterMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDVKPNLTVLKNRT
Ga0181400_113458323300017752SeawaterMSLGEAKQTLMLELVRATQGNYNVEELLELYYFMIEPEEDVKPNLTVLNNRT
Ga0181420_120071613300017757SeawaterLGEAKQTLMLELVRATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0181424_1011269843300017786SeawaterWYILMTLGEAKQTLMLELVRATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0181424_1018734433300017786SeawaterMTLDEAKQTLMLELVRATAGNYSIEELLELYYFIIEHEEDVKPNLIVLINK
Ga0181552_1046041533300017824Salt MarshMTLTESKQVLMLELVRATAGNYSVEELLELYYFMIEPEEET
Ga0181552_1048502233300017824Salt MarshTLTESKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0181607_1009895033300017950Salt MarshMTLIEAKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0181607_1020697043300017950Salt MarshMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLNNRT
Ga0180437_1079651133300017963Hypersaline Lake SedimentAKQTLMLELVRATAGNYSIEELLELYYFMTEPEEDIKPTLTVLKTGE
Ga0181600_1040434733300018036Salt MarshMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0181601_1021949943300018041Salt MarshAKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0180433_1085176423300018080Hypersaline Lake SedimentMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGE
Ga0181561_1008233233300018410Salt MarshMTLTESKQVLMLELVRATAGNYSVEELLELYYFMIEPEEE
Ga0181561_1012460533300018410Salt MarshMTLTESKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0206128_1000781503300020166SeawaterMTLTEAKQTLMLELVRATAGNYNVEELLELYYFMIEPEEDIKPTLTVLKRGE
Ga0206128_105615733300020166SeawaterMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMTEPEEDTKPNLTVLNNRT
Ga0206128_107922923300020166SeawaterMTLTEAKQVLMLELVRATAGNYSIEELLELYYFMTEPEEEIKPTLTVLSKKEVDKSC
Ga0181596_1031771113300020177Salt MarshMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTV
Ga0206131_1004186553300020185SeawaterMTLGEAKQTLMLELVRATQGNYNVEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0206131_1036100623300020185SeawaterMTLDEAKQTLMLELVRATAGNYSIEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0206130_1014734843300020187SeawaterTEAKQVLMLELVRATAGNYSIEELLELYYFMTEPEEEIKPTLTVLSKKEVDKSC
Ga0206130_1023719313300020187SeawaterMLELVRATAGNYSIEELLELYYFMTEPEEDTKPNLTVLNNRT
Ga0211677_1002340413300020385MarineMTTAEAKQTLMLELVRATQGNYSIEELLELYYFMIEPEEDSKPTLTVLNNRT
Ga0211576_1018945743300020438MarineMTLDEAKQTLMLELVRATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0206677_10001679273300021085SeawaterMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDVKPNLTVLNNRT
Ga0206682_1041425023300021185SeawaterMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDIKPTLTVLKTGE
Ga0213868_1004521013300021389SeawaterMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEETKPT
Ga0222716_1005366343300021959Estuarine WaterMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDNKPTLTVLNRTQT
Ga0212030_103784923300022053AqueousMTLDEAKQTLMLELVRATQGNYSIEELLELYYFIIEPEDDGKPNLTVLNNRT
Ga0212030_105358033300022053AqueousMTVTEAKQTLMLELVRATAGNYNVEELLELYYFMIEPEEDIKPTLTVLK
Ga0212023_101545733300022061AqueousMTLDEAKQTLMLELVRATQGNYSIEELLELYYFIIEPEEDVKPNLTVLKNRT
Ga0196903_102281523300022169AqueousMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0224508_1016874333300022413SedimentMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEE
Ga0255773_1037068013300022925Salt MarshELVRATAGNYSVEELLELYYFMIEPEEETKPTLTVLKIGE
Ga0208148_100632273300025508AqueousMTVTEAKQTLMLELVRATAGNYNVEELLELYYFMIEPEEDIKPTLTVLKRGE
Ga0208303_102623633300025543AqueousMTVAEAKQVLVLEIVRATAGNYTVEEVLELYYFMIEPEEDIKPTLTV
Ga0208303_102625323300025543AqueousMTVADAKQVLVLEIVRATAGNYTVEEVLELYYFMIEPEEDIKPTLTVLSTK
Ga0208303_104998033300025543AqueousMTLIEAKQTLMLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLNNRT
Ga0208660_112099613300025570AqueousEAKQTLMLELVRATAGNYNIEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0209138_104063033300025617MarineMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMIEPEEDIKPTLTVLKTGE
Ga0209405_102633033300025620Pelagic MarineMTLGEAKQTLMLELVRATQGNYSVEELLELYYFIIEPEEDVKPNLTVLNNRT
Ga0209504_109075133300025621Pelagic MarineMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDTKPNLTVLNNRT
Ga0208898_112441013300025671AqueousMTLTEAKQTLMLELVRATAGNYSVEELLELYYFMTEPEEDIKPTLTVL
Ga0209652_116011013300025684MarineLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLNNRT
Ga0208545_109032333300025806AqueousMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMVEPEEDTKPNLTVLNN
Ga0209307_100189043300025832Pelagic MarineMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEEIKPTLTVLSKKEVDKSC
Ga0209119_110173033300025860Pelagic MarineMTLTEAKQTLMLELVRATAGNYSIEELLELYYFMIEPEEETKPTLTVLKTGE
Ga0228634_106315043300028129SeawaterLELVRATAGNYSIEELLELYYFMIEPEEDIKPTLTVLKRGE
Ga0307379_1028483033300031565SoilMTLTEAKQVLMLELVRATAGNYSVEELLELYYFMTEPEEETKPTLTVLKTGD
Ga0307984_100109363300031658MarineMTLNEAKQTLMLELVRATAGNYSIEELLELYYFIIEPEEDVKPTLTVLTRED
Ga0315320_1045261733300031851SeawaterMTLDEAKQTLMLELVRATQGNYSVEELLELYYFMIEPEEDV


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