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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F104737 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 52 residues |
| Representative Sequence | QMRNWTFLALQEVTDATLPADASAWRDWYAQHGDEKMAEFEQLDWWRVRGDQ |
| Number of Associated Samples | 91 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 2.00 % |
| % of genes from short scaffolds (< 2000 bps) | 1.00 % |
| Associated GOLD sequencing projects | 86 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.51 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (98.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (20.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (49.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (42.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 46.25% β-sheet: 0.00% Coil/Unstructured: 53.75% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF02602 | HEM4 | 3.00 |
| PF02371 | Transposase_20 | 3.00 |
| PF13520 | AA_permease_2 | 3.00 |
| PF00849 | PseudoU_synth_2 | 3.00 |
| PF01979 | Amidohydro_1 | 3.00 |
| PF03949 | Malic_M | 2.00 |
| PF13495 | Phage_int_SAM_4 | 2.00 |
| PF14759 | Reductase_C | 2.00 |
| PF12867 | DinB_2 | 2.00 |
| PF00480 | ROK | 2.00 |
| PF14319 | Zn_Tnp_IS91 | 2.00 |
| PF13472 | Lipase_GDSL_2 | 2.00 |
| PF06348 | DUF1059 | 1.00 |
| PF06114 | Peptidase_M78 | 1.00 |
| PF14534 | DUF4440 | 1.00 |
| PF01148 | CTP_transf_1 | 1.00 |
| PF02518 | HATPase_c | 1.00 |
| PF12704 | MacB_PCD | 1.00 |
| PF12840 | HTH_20 | 1.00 |
| PF07883 | Cupin_2 | 1.00 |
| PF00006 | ATP-synt_ab | 1.00 |
| PF13601 | HTH_34 | 1.00 |
| PF02308 | MgtC | 1.00 |
| PF01855 | POR_N | 1.00 |
| PF07732 | Cu-oxidase_3 | 1.00 |
| PF13419 | HAD_2 | 1.00 |
| PF00656 | Peptidase_C14 | 1.00 |
| PF05163 | DinB | 1.00 |
| PF00111 | Fer2 | 1.00 |
| PF04986 | Y2_Tnp | 1.00 |
| PF08309 | LVIVD | 1.00 |
| PF14384 | BrnA_antitoxin | 1.00 |
| PF16884 | ADH_N_2 | 1.00 |
| PF01522 | Polysacc_deac_1 | 1.00 |
| PF00080 | Sod_Cu | 1.00 |
| PF00440 | TetR_N | 1.00 |
| PF08281 | Sigma70_r4_2 | 1.00 |
| PF08544 | GHMP_kinases_C | 1.00 |
| PF00795 | CN_hydrolase | 1.00 |
| PF01152 | Bac_globin | 1.00 |
| PF00072 | Response_reg | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG1940 | Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain | Transcription [K] | 4.00 |
| COG0564 | Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific | Translation, ribosomal structure and biogenesis [J] | 3.00 |
| COG1187 | Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 | Translation, ribosomal structure and biogenesis [J] | 3.00 |
| COG1587 | Uroporphyrinogen-III synthase | Coenzyme transport and metabolism [H] | 3.00 |
| COG3547 | Transposase | Mobilome: prophages, transposons [X] | 3.00 |
| COG0281 | Malic enzyme | Energy production and conversion [C] | 2.00 |
| COG0686 | Alanine dehydrogenase (includes sporulation protein SpoVN) | Amino acid transport and metabolism [E] | 2.00 |
| COG5276 | Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain | Function unknown [S] | 1.00 |
| COG4249 | Uncharacterized conserved protein, contains caspase domain | General function prediction only [R] | 1.00 |
| COG4231 | TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit | Energy production and conversion [C] | 1.00 |
| COG3174 | Membrane component of predicted Mg2+ transport system, contains DUF4010 domain | Inorganic ion transport and metabolism [P] | 1.00 |
| COG2346 | Truncated hemoglobin YjbI | Inorganic ion transport and metabolism [P] | 1.00 |
| COG2318 | Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB) | Secondary metabolites biosynthesis, transport and catabolism [Q] | 1.00 |
| COG2132 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) | Cell cycle control, cell division, chromosome partitioning [D] | 1.00 |
| COG2032 | Cu/Zn superoxide dismutase | Inorganic ion transport and metabolism [P] | 1.00 |
| COG1285 | Magnesium uptake protein YhiD/SapB, involved in acid resistance | Inorganic ion transport and metabolism [P] | 1.00 |
| COG0726 | Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family | Cell wall/membrane/envelope biogenesis [M] | 1.00 |
| COG0674 | Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit | Energy production and conversion [C] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 98.00 % |
| All Organisms | root | All Organisms | 2.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300017935|Ga0187848_10028007 | All Organisms → cellular organisms → Bacteria | 2875 | Open in IMG/M |
| 3300031708|Ga0310686_112884060 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1063 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 20.00% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 9.00% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 9.00% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 8.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 6.00% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 5.00% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 5.00% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 4.00% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.00% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 3.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.00% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.00% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 2.00% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.00% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.00% |
| Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland | 1.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 1.00% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 1.00% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000567 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 | Environmental | Open in IMG/M |
| 3300001356 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300005950 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 | Environmental | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300009519 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 | Environmental | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009629 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 | Environmental | Open in IMG/M |
| 3300009644 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 | Environmental | Open in IMG/M |
| 3300009646 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 | Environmental | Open in IMG/M |
| 3300009683 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG | Environmental | Open in IMG/M |
| 3300009762 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40 | Environmental | Open in IMG/M |
| 3300009824 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300014152 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG | Environmental | Open in IMG/M |
| 3300014159 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG | Environmental | Open in IMG/M |
| 3300014160 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG | Environmental | Open in IMG/M |
| 3300014162 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG | Environmental | Open in IMG/M |
| 3300014167 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300016702 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300016750 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
| 3300017924 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 | Environmental | Open in IMG/M |
| 3300017929 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 | Environmental | Open in IMG/M |
| 3300017935 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 | Environmental | Open in IMG/M |
| 3300017940 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017988 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG | Environmental | Open in IMG/M |
| 3300017996 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40 | Environmental | Open in IMG/M |
| 3300018003 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40 | Environmental | Open in IMG/M |
| 3300018004 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100 | Environmental | Open in IMG/M |
| 3300018013 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100 | Environmental | Open in IMG/M |
| 3300018014 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40 | Environmental | Open in IMG/M |
| 3300018016 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40 | Environmental | Open in IMG/M |
| 3300018021 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150 | Environmental | Open in IMG/M |
| 3300018026 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100 | Environmental | Open in IMG/M |
| 3300018034 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10 | Environmental | Open in IMG/M |
| 3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
| 3300019082 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40 | Environmental | Open in IMG/M |
| 3300019284 | Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019787 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300024233 | Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0 | Environmental | Open in IMG/M |
| 3300024295 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5 | Environmental | Open in IMG/M |
| 3300025453 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025454 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300025498 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300027648 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300028765 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2 | Environmental | Open in IMG/M |
| 3300028779 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2 | Environmental | Open in IMG/M |
| 3300029903 | Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703 | Environmental | Open in IMG/M |
| 3300029982 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1 | Environmental | Open in IMG/M |
| 3300029992 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3 | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030044 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2 | Environmental | Open in IMG/M |
| 3300030058 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300030399 | II_Palsa_E2 coassembly | Environmental | Open in IMG/M |
| 3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
| 3300030506 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1 | Environmental | Open in IMG/M |
| 3300030737 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12270J11330_100697041 | 3300000567 | Peatlands Soil | AALPADASAWRDWYAQHGAEKMAEFEKLDWWRVRGDQ* |
| JGI12269J14319_102287292 | 3300001356 | Peatlands Soil | LHEVTDAALPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ* |
| JGIcombinedJ26739_1008159681 | 3300002245 | Forest Soil | ALNEITDEALPANAAAWRDWYAQHGADKTAEFEQMDWWKVRGDQ* |
| Ga0062385_110256602 | 3300004080 | Bog Forest Soil | ELAGDPETNPQMRNWTFMALREITDETLPTDATAWQNWYRQHGAEKIAEFDQLDWWKVRGDQ* |
| Ga0062389_1041728502 | 3300004092 | Bog Forest Soil | ITDEHLPADAESWQHWYNDHGVDKMAEFEQMDWWRVRGDE* |
| Ga0062386_1005412472 | 3300004152 | Bog Forest Soil | TQRMRMVPRLIELAADPQTTPQMRNWTFLALQEITDQPLPADASAWRDWYVQHGDEKMAEFVHSDWWRVRGDQ* |
| Ga0062386_1005469691 | 3300004152 | Bog Forest Soil | AADPQTTPQMRNWTFMALHEITDATLPADASLWQNWYRQHGAEKMVEFERMEWWRVRGDQ |
| Ga0062388_1012683121 | 3300004635 | Bog Forest Soil | LHEITDAALPADPSAWRDWYAQHGAEKTAEFDQLDWWTVRGDQ* |
| Ga0070761_101473612 | 3300005591 | Soil | LIELAADPQITPQMRNWTFLALHEVTDAVLPGDASAWRDWYAQHGAEKMTEFEQLDWWRVRGDH* |
| Ga0070761_106778801 | 3300005591 | Soil | KLIELAADPQITPQMRNWTFLALHEVTDAALPGDASAWREWYAQHGGEKMTEFEQLDWWRVRGDQ* |
| Ga0070763_108109251 | 3300005610 | Soil | MVPKLIGLAADPATTPQMRNWALLALREITDEAPPANATAWQDWYTQHGAEKMAEFEQIDWWKVRGDQ* |
| Ga0066787_101373512 | 3300005950 | Soil | LTEITEANLPPNAPAWNDWYTEHGAEKMAEFEQQDSWHIRGDE* |
| Ga0079221_105056841 | 3300006804 | Agricultural Soil | TDENLPADAQAWRTWYGQHGAGKLAAFEQLDWWQIRGDE* |
| Ga0116108_11883701 | 3300009519 | Peatland | QTTQQMRNWAFLALHEVTDAALPADASAWRDWYAQHGAEKMAEFEQLDWWRVRGDQ* |
| Ga0116214_11589892 | 3300009520 | Peatlands Soil | LPADASAWRDWYAQHGAEKMAEFEKLDWWRVRGDQ* |
| Ga0116119_10301252 | 3300009629 | Peatland | ALSADASAWRDWYAQHGAEKMAEFEQLDWWSVRGDQ* |
| Ga0116121_10026325 | 3300009644 | Peatland | DSQATPQMRNWTFMALREITDQPLASDASVWQDWYAQHGTEKMAEFERADWWRVHGDQ* |
| Ga0116132_11734782 | 3300009646 | Peatland | PQMRNWTFLALHEVTDAALSADASAWRDWYAQHGAEKMAEFEQLDWWSVRGDQ* |
| Ga0116224_100598271 | 3300009683 | Peatlands Soil | DAALPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ* |
| Ga0116130_10693822 | 3300009762 | Peatland | ADPQITPQMRNWTFLALQEVTDATLPADASAWRDWYAQHGDEKRAEFEQSDWWKVRGDQ* |
| Ga0116219_100529851 | 3300009824 | Peatlands Soil | DESLPADPSAWRDWYTQHGAEKMAEFEQMDWWKVRGDE* |
| Ga0116223_104731761 | 3300009839 | Peatlands Soil | QMRNWTFLALVEITDEHLPADAEAWEHWYTEHGADKTAEFEQMDWWRVRGDE* |
| Ga0074045_100118581 | 3300010341 | Bog Forest Soil | QMRNWAFLALTEITDQTLPADASAWQNWYTQHGDEKMAEFERADWWKVRGDQ* |
| Ga0074044_1000237814 | 3300010343 | Bog Forest Soil | LPAAASAWRDWYTQHGDEKMAEFERADWWKVRGDQ* |
| Ga0074044_102060173 | 3300010343 | Bog Forest Soil | MVPKLIELAADPQITPQMRNWTFLALHEVTDAALPADASAWRDWYAQHRTEKMAEFEQLDWWRVRGDQ* |
| Ga0136449_1023959991 | 3300010379 | Peatlands Soil | LPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ* |
| Ga0137381_100724931 | 3300012207 | Vadose Zone Soil | LALREITDENLPADAVAWSRWYQDHGTEKMAEFERLDWWQVRGDE* |
| Ga0137381_116503631 | 3300012207 | Vadose Zone Soil | LALREITDENLPADAVAWSRWYQDHGTEKMAEFEKLDWWQVRGDE* |
| Ga0137385_109209131 | 3300012359 | Vadose Zone Soil | MVPQLIDLALNPRTTPQMRNWTFLALREITDENLPADAVAWSRWYQDHGTEKMAEFEKLDWWQVRGDE* |
| Ga0181533_11472572 | 3300014152 | Bog | DPQITPQMRNWTFLALHEVTDAAVPADASSWQDWYAQHGAEKMAEFEQLDWWKVRGDQ* |
| Ga0181530_100047641 | 3300014159 | Bog | IELAADPQITPQMRNWTFLALHEVTDAALPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ* |
| Ga0181517_103062873 | 3300014160 | Bog | RLRMVPKLIDLAGDPQTSPQMRNWTFLALQGITDAALPADASAWRSWYAQHGAEKRAEFEQSDWWRVRGDQ* |
| Ga0181538_107443221 | 3300014162 | Bog | NWTFLALQEVTDKALPADAAAWQDWYAQHGAEKMAEFEQSDWWRVRGDQ* |
| Ga0181528_108767621 | 3300014167 | Bog | NWTFLALQEITDAALPADASAWRNWYAQHGAEKRDEFEKTDWWRVRGDQ* |
| Ga0181526_100501001 | 3300014200 | Bog | QNLPADASAWHEWYLQHGTEKMIEFEHLDWWRVRGDQ* |
| Ga0181526_103060442 | 3300014200 | Bog | QMRNWVFLALHEITDETLPSDASAWQDWYARHGAEKIAEFERQDWWKVRGDQ* |
| Ga0181511_10263751 | 3300016702 | Peatland | AFVALHEITDQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0181505_101743871 | 3300016750 | Peatland | QTLPADASAWQHWYAQHGAEKMAEFEQADWWKVRGDQ |
| Ga0181505_104800221 | 3300016750 | Peatland | QTTPQMRSWTFLALHEVTDAALPGDASAWRDWYAQHGAEKMAEFEQLDWWKIRGDQ |
| Ga0181505_107034742 | 3300016750 | Peatland | DPQTTPKMRNWAFVALHEITDQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0187818_100270001 | 3300017823 | Freshwater Sediment | IDLAADPQTTPKMRNWAFVALREITDQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0187820_10986044 | 3300017924 | Freshwater Sediment | QMLNWTFLALQAITDAAVPADASAWRDWYAQHGAEKRAEFEKLDWWQVRGDQ |
| Ga0187849_13282551 | 3300017929 | Peatland | QRMRMVPKLIELAADPQTTPQMRNWTFLALREVTDAALPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ |
| Ga0187848_100280071 | 3300017935 | Peatland | ELAGDAQTTPQMRNWTFLALHEVTDAALPADASAWRDWYAQHGAEKMAEFEQLDWWRVRGDQ |
| Ga0187848_101838381 | 3300017935 | Peatland | QMRNWTFLALQEVTDATLPADASAWRDWYAQHGDEKMAEFEQLDWWRVRGDQ |
| Ga0187853_104725502 | 3300017940 | Peatland | VTDAALPGDASAWRDWYAQHGAEKMAEFEQLDWWKIRGDQ |
| Ga0187819_102347701 | 3300017943 | Freshwater Sediment | VALREITDQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0187879_106715812 | 3300017946 | Peatland | HEVTDAALPGDASAWRDWYAQHGAEKMAEFEQLDWWKIRGDQ |
| Ga0187783_100432461 | 3300017970 | Tropical Peatland | LALREITDQSQPAEVSAWRDWYTLHGAEKMAEFEQMDWWKVRGDE |
| Ga0181520_107959302 | 3300017988 | Bog | MRNWSFMALGEITDEHLPADAAAWRDWYTQHGAEKMAECEQMDWWKVRGDE |
| Ga0187891_10142811 | 3300017996 | Peatland | LAADPQITPQMRNWTFLALHEVTDAALPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGD |
| Ga0187876_11782231 | 3300018003 | Peatland | LIELAADPQTTPKMRNWAFVALREITDQTLPGDASTWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0187865_10559841 | 3300018004 | Peatland | DQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0187873_11966141 | 3300018013 | Peatland | LAADPQITPQMRNWTFLALHEVTDAAVPADASSWQDWYAQHGAEKMAEFEQSDWWRVRGD |
| Ga0187860_11123331 | 3300018014 | Peatland | ADPQITPQMRNWTFLALQEVTDATLPADASAWRDWYAQHGDEKMAEFEQLDWWRVRGDQ |
| Ga0187880_11597031 | 3300018016 | Peatland | LQEVTDATLPADASAWRDWYAQHGDEKRAEFEQSDWWKVRGDQ |
| Ga0187882_11657671 | 3300018021 | Peatland | LRMVPKLIELAADPQITPQMRNWTFLALHEVTDAALSADASAWRDWYAQHGAEKMAEFEQLDWWSVRGDQ |
| Ga0187857_101531962 | 3300018026 | Peatland | EITDQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0187863_104326142 | 3300018034 | Peatland | IELAGDSQTTPQMRNWAFLALTEITDQTLPADASAWRDWYTQHGDEKMAEFERADWWKVRGDQ |
| Ga0187859_100157151 | 3300018047 | Peatland | FLALGEITDESLPAQASAWQDWYRLHGADKMAEFTRLEWWRVRGDQ |
| Ga0187852_11285025 | 3300019082 | Peatland | HEVTDAALPGDASAWRDWYAQHGAEKMAEFEQLDWWKVRGDQ |
| Ga0187797_10284812 | 3300019284 | Peatland | QLIDLAADPETTPQMRGWTFMALREITDQMLPANASTWQDWYTQHGSEKMAEFESSDWWEVRGDQ |
| Ga0182031_11716991 | 3300019787 | Bog | MRNWTFMALREITDQPLAADASVWQDWYAQHGTEKMAEFERADWWRVHGDQ |
| Ga0210399_114253491 | 3300020581 | Soil | MRNWTFLALTEITDEHLPADGSAWEHWNNDHGVDKMTEFEQMDWWRVRGDE |
| Ga0210397_110720952 | 3300021403 | Soil | TDANVPGDAKAWRDWYDQHGSQKLREFAQLDWWKVHGDE |
| Ga0210383_1001301912 | 3300021407 | Soil | QMRNWTFLALHEITDAALPADPSAWRDWYAQHGAEKMAEFEQSDWWTVRGDQ |
| Ga0224521_11395101 | 3300024233 | Soil | WAFLALHEITDATLPANASVWQDWYTQHGAEKTAEFERLDWWKVRGDQ |
| Ga0224556_11325041 | 3300024295 | Soil | VPQLIALAADPQTAAQTRSWTFLALHEITDATVPSDAPDWQKWYDQHGAEKMAEFEHADWWQVRGDQ |
| Ga0208455_10057035 | 3300025453 | Peatland | DAALPADASAWRDWYAQHGAEKMAEFEQLDWWRVRGDQ |
| Ga0208455_10148491 | 3300025453 | Peatland | MRNWAFVALREITDQTLPGDASAWQNWYAQHGTEKMAEFEQLDWWKVRGDQ |
| Ga0208039_10090941 | 3300025454 | Peatland | EVTDAALPADASAWRDWYAQHGTEKMAEFEQLDWWSVRGDQ |
| Ga0208819_10992582 | 3300025498 | Peatland | TDQNLPADASAWHEWYLQHGTEKMIEFEHLDWWRVRGDQ |
| Ga0209420_11448832 | 3300027648 | Forest Soil | MVPKLIELAADPQITPQMRNWTFVALHEITDAALPGDASAWRDWYAQHGAEKMTEFEQLDWWRVRGDQ |
| Ga0209274_104614211 | 3300027853 | Soil | RMVPKLIELAADPQITPQMRNWTFLALHEVTDAVLPGDASAWRDWYAQHGAEKMTEFEQLDWWRVRGDH |
| Ga0209693_102677292 | 3300027855 | Soil | MVPKLIGLAADPATTPQMRNWALLALREITDEAPPANATAWQDWYTQHGAEKMAEFEQIDWWKVRGDQ |
| Ga0209579_101935182 | 3300027869 | Surface Soil | QTSAQMRNWSFMALREITDESLPSTASAWQDWYEKHGADKMAEFEQMDWWKVRGDE |
| Ga0209380_103914561 | 3300027889 | Soil | PKLIALVEDPQTTPQMRNWSFLALAEITDEHLPADAEAWEHWYNDHGADKMAEFEQMDWWRVRGDQ |
| Ga0209698_105217221 | 3300027911 | Watersheds | NWTFLALREITDENLPADASAWQEWYSQHGAEKMAEFEQLDWWKVRGDQ |
| Ga0302198_102279211 | 3300028765 | Bog | LALHEITDATVPSDAPDWQKWYDQHGAEKMAEFEHADWWQVRGDQ |
| Ga0302266_100978343 | 3300028779 | Bog | LHEITDATVPSDAPDWQKWYDQHGAEKMAEFEHADWWQVRGDQ |
| Ga0247271_1075761 | 3300029903 | Soil | DPQTSPQMRNWTFLALQEITDAALPADASAWRSWYAQHGAEKRAEFEQSDWWRVRGDQ |
| Ga0302277_10330674 | 3300029982 | Bog | REITDQPLAADASVWQDWYAQHGTEKMAEFERADWWRVHGDQ |
| Ga0302276_100072086 | 3300029992 | Bog | MVPQLIALAADPQTAAQTRSWTFLALHEITDATVPSDAPDWQKWYDQHGAEKMAEFEHADWWQVRGDQ |
| Ga0311338_103881541 | 3300030007 | Palsa | WAFLALREITDQTLPADASAWQRWYAQHGAEKMAEFERLDWWKVRGDQ |
| Ga0302281_101504101 | 3300030044 | Fen | ITDQPLASDASVWQDWYAQHGTEKMAEFERADWWRVHGDQ |
| Ga0302179_105259421 | 3300030058 | Palsa | PQITQQMRNWTFLALHEVTDAALPGDASAWRDWYAQHGAEKMSEFEQSDWWRVRGDQ |
| Ga0311353_107927431 | 3300030399 | Palsa | DPQITPQMRNWTFLALHEVTDAALPGDASAWRDWYAQHGAEKMTEFEQSDWWRVRGDQ |
| Ga0310037_101310611 | 3300030494 | Peatlands Soil | TDAALPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ |
| Ga0302194_100333682 | 3300030506 | Bog | MALREITDQPLAADASVWQDWYAQHGTEKMAEFERADWWRVHRDQ |
| Ga0302310_105047352 | 3300030737 | Palsa | LRMVPKLIELAADPQITPQMRNWTFLALHEVTDAALPDDASAWRDWYAQHGGEKMTEFEQLDWWRVRGDQ |
| Ga0310686_1128840601 | 3300031708 | Soil | MRKQRMRMAPKLIELASDSQATPQMRNWAFMALTEITDQTLPADASAWQDWYTQHGAEKMAEFEHADWWKVRGDQ |
| Ga0307474_102095113 | 3300031718 | Hardwood Forest Soil | ADPQTRPQMRNWAFLALQGITDETLPADASAWQRWYAQHATEKMAEFQQLDWWKVRGDQ |
| Ga0306926_108451033 | 3300031954 | Soil | DESLPADASAWRNWYTHHGAEKMAEFQQMDWWKVRGDE |
| Ga0306922_119877131 | 3300032001 | Soil | NWCFMALHEITDENLPGDVSAWRDWYRQHGAEKMTEFEQMDWWEVRGDE |
| Ga0318577_105916031 | 3300032091 | Soil | RTWCFMALHEITDESLPPDADGWNHWFAAHGAEKMAEFEHLDWWQVRGDG |
| Ga0311301_106019411 | 3300032160 | Peatlands Soil | QITPQMRNWTFLALHEVTDASLPADASAWRDWYAQHGTEKMAEFEQLDWWRVRGDQ |
| Ga0335079_108462892 | 3300032783 | Soil | AQTNPQMRNWAFLALQEITDESLPANASSWQEWYRQHGADKIAEFEKLDWWRVRGDQ |
| Ga0335074_106124902 | 3300032895 | Soil | ELAADAQTTTQMRSWTFLALRNITDESLPADASEWQDWYKQHGAEKMAGFQQLDWWKVRGDQ |
| Ga0335072_106868311 | 3300032898 | Soil | SWTFLALRNITDESLPADASEWQDWYKQHGAEKMAGFQQLDWWKVRGDQ |
| Ga0310914_117783251 | 3300033289 | Soil | ALREITDENLPADASAWRNWYTHHGAQKMAEFQQMDWWKVRGDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |