Metagenome Family F104734

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104734
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	86 residues
Representative Sequence	MRFGMTELRKRALAAVDEVAEQAQSGPVERHLALRFALAFLANFADERWPFDNFWRAIAVRDEKVRTATVVAARNAIHRAVRE
Number of Associated Samples	79
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	11.00 %
% of genes near scaffold ends (potentially truncated)	30.00 %
% of genes from short scaffolds (< 2000 bps)	89.00 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.85

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (16.000 % of family members)
Environment Ontology (ENVO)	Unclassified (72.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (73.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.15% β-sheet: 0.00% Coil/Unstructured: 46.85%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.85
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.85
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.24.9.1: alpha-catenin/vinculin	d1dova_	1dov	0.73417
a.24.9.1: alpha-catenin/vinculin	d3rf3b2	3rf3	0.71972
a.215.1.1: A middle domain of Talin 1	d1sj7a1	1sj7	0.71042
a.24.9.2: VBS domain	d2b0ha1	2b0h	0.69898
a.24.29.1: TM1646-like	d2p61a1	2p61	0.69206

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00589	Phage_integrase	11.00
PF04956	TrbC	6.00
PF08681	DUF1778	5.00
PF00565	SNase	4.00
PF10025	DUF2267	2.00
PF09722	Xre_MbcA_ParS_C	2.00
PF05101	VirB3	2.00
PF04002	RadC	1.00
PF04545	Sigma70_r4	1.00
PF02518	HATPase_c	1.00
PF00916	Sulfate_transp	1.00
PF00498	FHA	1.00
PF01381	HTH_3	1.00
PF11987	IF-2	1.00
PF13643	DUF4145	1.00
PF02586	SRAP	1.00
PF07715	Plug	1.00
PF04191	PEMT	1.00
PF02371	Transposase_20	1.00
PF05168	HEPN	1.00
PF13545	HTH_Crp_2	1.00
PF04367	DUF502	1.00
PF03551	PadR	1.00
PF13432	TPR_16	1.00
PF13561	adh_short_C2	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	6.00
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	5.00
COG3702	Type IV secretory pathway, VirB3 component	Intracellular trafficking, secretion, and vesicular transport [U]	2.00
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	1.00
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.00
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.00
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.00
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	1.00
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	1.00
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.00
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	1.00
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	1.00
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	1.00
COG2928	Uncharacterized membrane protein	Function unknown [S]	1.00
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.00 %
Unclassified	root	N/A	2.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	95.00 %
Unclassified	root	N/A	2.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.00 %
Unclassified	root	N/A	2.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	76.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.00 %
Unclassified	root	N/A	2.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	74.00 %
Unclassified	root	N/A	2.00 %
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	1.00 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	67.00 %
Unclassified	root	N/A	2.00 %
Sphingopyxis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis	1.00 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	1.00 %
Roseibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium	1.00 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	56.00 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	2.00 %
Unclassified	root	N/A	2.00 %
Roseibium aquae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aquae	1.00 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	1.00 %
Sphingomonas sanguinis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sanguinis	1.00 %
Sphingobium yanoikuyae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae	1.00 %
Sphingopyxis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sediminicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	56.00 %
Unclassified	root	N/A	2.00 %
Methylobacterium sp. 174MFSha1.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 174MFSha1.1	1.00 %
Sphingomonas sp. G-3-2-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. G-3-2-10	1.00 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1.00 %
Roseibium aquae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aquae	1.00 %
Sphingomonas sanguinis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sanguinis	1.00 %
Sphingobium yanoikuyae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae	1.00 %
Sphingopyxis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis	1.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001915\|JGI24741J21665_1042367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	671	Open in IMG/M
3300001989\|JGI24739J22299_10144032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	706	Open in IMG/M
3300001990\|JGI24737J22298_10034309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1573	Open in IMG/M
3300004153\|Ga0063455_100890020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	629	Open in IMG/M
3300005293\|Ga0065715_10197023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1382	Open in IMG/M
3300005327\|Ga0070658_10089354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	2537	Open in IMG/M
3300005327\|Ga0070658_10156527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1910	Open in IMG/M
3300005327\|Ga0070658_10406439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1170	Open in IMG/M
3300005327\|Ga0070658_10426949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M
3300005327\|Ga0070658_10770361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	836	Open in IMG/M
3300005329\|Ga0070683_100212837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1836	Open in IMG/M
3300005331\|Ga0070670_100677510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	926	Open in IMG/M
3300005334\|Ga0068869_100578186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	947	Open in IMG/M
3300005335\|Ga0070666_10309916	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300005335\|Ga0070666_11315932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	539	Open in IMG/M
3300005338\|Ga0068868_102099290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 174MFSha1.1	537	Open in IMG/M
3300005339\|Ga0070660_100150487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1871	Open in IMG/M
3300005344\|Ga0070661_100628166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300005347\|Ga0070668_100545792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. G-3-2-10	1008	Open in IMG/M
3300005354\|Ga0070675_100306948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1399	Open in IMG/M
3300005354\|Ga0070675_101953167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	541	Open in IMG/M
3300005355\|Ga0070671_100052249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3398	Open in IMG/M
3300005355\|Ga0070671_101176542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300005366\|Ga0070659_100397273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1163	Open in IMG/M
3300005367\|Ga0070667_100081507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2769	Open in IMG/M
3300005455\|Ga0070663_100217910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300005455\|Ga0070663_100529389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	982	Open in IMG/M
3300005457\|Ga0070662_100571055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	949	Open in IMG/M
3300005534\|Ga0070735_10106196	All Organisms → cellular organisms → Bacteria → Proteobacteria	1766	Open in IMG/M
3300005544\|Ga0070686_100710958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	802	Open in IMG/M
3300005548\|Ga0070665_102221784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	552	Open in IMG/M
3300005563\|Ga0068855_101280981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	759	Open in IMG/M
3300005575\|Ga0066702_10841884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae	546	Open in IMG/M
3300005577\|Ga0068857_101686616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	619	Open in IMG/M
3300005577\|Ga0068857_101832569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	594	Open in IMG/M
3300005577\|Ga0068857_101842863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	592	Open in IMG/M
3300005614\|Ga0068856_100083164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3178	Open in IMG/M
3300005614\|Ga0068856_101241738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	761	Open in IMG/M
3300006804\|Ga0079221_10853183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	661	Open in IMG/M
3300006881\|Ga0068865_101911931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	537	Open in IMG/M
3300009093\|Ga0105240_10626139	All Organisms → cellular organisms → Bacteria → Proteobacteria	1182	Open in IMG/M
3300009148\|Ga0105243_11076544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	811	Open in IMG/M
3300009177\|Ga0105248_10597512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1245	Open in IMG/M
3300009177\|Ga0105248_10824595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1047	Open in IMG/M
3300009553\|Ga0105249_11024307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	895	Open in IMG/M
3300010400\|Ga0134122_10785106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	907	Open in IMG/M
3300011264\|Ga0151623_1136316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	547	Open in IMG/M
3300012354\|Ga0137366_10378881	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300012989\|Ga0164305_11693946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	567	Open in IMG/M
3300013102\|Ga0157371_10049870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2973	Open in IMG/M
3300013102\|Ga0157371_10314684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium → Roseibium aquae	1135	Open in IMG/M
3300013102\|Ga0157371_11000065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	638	Open in IMG/M
3300013105\|Ga0157369_10247346	All Organisms → cellular organisms → Bacteria → Proteobacteria	1862	Open in IMG/M
3300013296\|Ga0157374_10021943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingopyxis	5689	Open in IMG/M
3300013297\|Ga0157378_11228533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	789	Open in IMG/M
3300013297\|Ga0157378_12251536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	596	Open in IMG/M
3300014325\|Ga0163163_11798848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	673	Open in IMG/M
3300014497\|Ga0182008_10060727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1863	Open in IMG/M
3300015195\|Ga0167658_1012954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	2494	Open in IMG/M
3300015372\|Ga0132256_102898821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	577	Open in IMG/M
3300015374\|Ga0132255_102190663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	843	Open in IMG/M
3300018476\|Ga0190274_11356020	Not Available	799	Open in IMG/M
3300025903\|Ga0207680_10093087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1922	Open in IMG/M
3300025903\|Ga0207680_10099212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1868	Open in IMG/M
3300025909\|Ga0207705_10085297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2307	Open in IMG/M
3300025909\|Ga0207705_10339815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1156	Open in IMG/M
3300025913\|Ga0207695_11173338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	648	Open in IMG/M
3300025919\|Ga0207657_10226406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1496	Open in IMG/M
3300025925\|Ga0207650_11847334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	511	Open in IMG/M
3300025930\|Ga0207701_10398444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1186	Open in IMG/M
3300025931\|Ga0207644_10046805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	3083	Open in IMG/M
3300025941\|Ga0207711_10679220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sanguinis	960	Open in IMG/M
3300025944\|Ga0207661_10348080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1336	Open in IMG/M
3300025945\|Ga0207679_10901100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	809	Open in IMG/M
3300025949\|Ga0207667_10211304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1989	Open in IMG/M
3300025981\|Ga0207640_10215884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1465	Open in IMG/M
3300026023\|Ga0207677_10498995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1052	Open in IMG/M
3300026023\|Ga0207677_10898766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	798	Open in IMG/M
3300026067\|Ga0207678_10335788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1302	Open in IMG/M
3300026078\|Ga0207702_10085999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2741	Open in IMG/M
3300026116\|Ga0207674_10709122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	971	Open in IMG/M
3300026285\|Ga0209438_1190770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	544	Open in IMG/M
3300026319\|Ga0209647_1050665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	2236	Open in IMG/M
3300026527\|Ga0209059_1225007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	629	Open in IMG/M
3300031548\|Ga0307408_100862646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	826	Open in IMG/M
3300031716\|Ga0310813_11728642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	586	Open in IMG/M
3300031731\|Ga0307405_10145181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1661	Open in IMG/M
3300031731\|Ga0307405_10934422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	736	Open in IMG/M
3300031852\|Ga0307410_10113348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1965	Open in IMG/M
3300031903\|Ga0307407_11348999	Not Available	561	Open in IMG/M
3300031938\|Ga0308175_100613820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1172	Open in IMG/M
3300031938\|Ga0308175_100667964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1125	Open in IMG/M
3300031939\|Ga0308174_10425320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1074	Open in IMG/M
3300031996\|Ga0308176_10238190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1737	Open in IMG/M
3300031996\|Ga0308176_12652505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	533	Open in IMG/M
3300032004\|Ga0307414_10924988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	800	Open in IMG/M
3300032005\|Ga0307411_10111561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1958	Open in IMG/M
3300032074\|Ga0308173_11459744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	643	Open in IMG/M
3300032080\|Ga0326721_10127055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	1261	Open in IMG/M
3300032126\|Ga0307415_101500262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	645	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	75.00%
Environmental	Environmental	25.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	75.00%
Terrestrial	Environmental → Terrestrial	24.00%
Aquatic	Environmental → Aquatic	1.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	54.00%
Soil	Environmental → Terrestrial → Soil	24.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Freshwater	Environmental → Aquatic → Freshwater	1.00%
Roots	Host-Associated → Plants → Roots	1.00%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	31.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.00%
Loam	Environmental → Terrestrial → Soil → Loam	4.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.00%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.00%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	31.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.00%
Acid Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage	1.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.00%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.00%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	16.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	13.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.00%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.00%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment	1.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.00%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.00%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011264	Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 63	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24741J21665_10423672	3300001915	Corn Rhizosphere	MFRMRFGMSELRNRALAAIDEVAEQAQSQPVERQLALRFALAFLANFADERWPFDNFWRAIATPDQKVRRATVVAARNAIHRAIKH
JGI24739J22299_101440323	3300001989	Corn Rhizosphere	MFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVA
JGI24737J22298_100343092	3300001990	Corn Rhizosphere	LYLFRMRFGMSELRKRALAAVDEVAEQARSAPVERQLALRFALAFLSNFADERWPFDSFLRAVALRDEKIRYATVLAARNAIHRAVKD*
Ga0063455_1008900202	3300004153	Soil	YLFPMQRFSMAELRERALAAVDEAADQTADGPVQRSLALRFALAFLANFAEERWPFDNFWRAIASPNERGRRQNANAARNAIRRAVAVRQS*
Ga0065715_101970233	3300005293	Miscanthus Rhizosphere	MFHMRFGMSELRTRALAAVDEVADQALNGPVERHLALRFALAVLANFAEERWPFDNFWRAIATRDPKVRSATVTAARNAIHRAVKG*
Ga0070658_100893544	3300005327	Corn Rhizosphere	MTELRDRALAAVDEAAELTKDGPVRRSLALRFALAFFANFAEDRWPFDNFWRAVAVTDEKVRVATAVAARNAIYRSVKS*
Ga0070658_101565272	3300005327	Corn Rhizosphere	MRFGMSKLRERALAAVDEAAEQTANGPVQRALALCLSLAFLANFADERWPFDNFWRAIATRDEEVRSATVVAARNAIRPSVQGRD*
Ga0070658_104064392	3300005327	Corn Rhizosphere	MRFALSDLRDRALAPVDEGADQAGNDPVTRSLALRFALAFLANIAEERWPFDNFWRTIATEDDKVRSATAVAARNAIRRAVARN*
Ga0070658_104269492	3300005327	Corn Rhizosphere	MFRMRFGMSELRSWALAAVDEVAEQSKTGPVQRPVSLRFALAFLANFAEDRWPFDNFWRAIATQDDKVRSATVVAARNAIHRAVRR*
Ga0070658_107703611	3300005327	Corn Rhizosphere	MRFGMTDLRQRALAAVDEATDHSNAGPVRRTLALRFTLAFLANFAGERWPFDNFWQAIGSQNDRARWQNANAARNAIRRAVGVAQRDGEAILPDEIGTVAEGKE*
Ga0070683_1002128373	3300005329	Corn Rhizosphere	MFRMRFGMSELRKRALAAVDEVAEQARFAPVERHLALRFALAFLANFADERWPFDNFWRAVALPDEKARGATVVAARNAIHRAVKD*
Ga0070670_1006775102	3300005331	Switchgrass Rhizosphere	MRFGISELRKRALVAVDEIAEQAKSAPVERQLALRFVLAFLANFAEERWPFDSFWRAIAVRDEKVRYATVLAARNAIHRAVKGDAETA*
Ga0068869_1005781862	3300005334	Miscanthus Rhizosphere	MAAKAYPQIGVNVLLMFRMRFGMSELRIRALAAVDEVAEQASSGPVQRHLALRFALAFLANFADERWPFDNFWRAVALSDEKVRNATVLAARNAIHRAVRD*
Ga0070666_103099163	3300005335	Switchgrass Rhizosphere	MRFGMSELRKRALAAVDEVAEQARSAPVERQLALRFTLAFLSNFAEERWPFDSFWRAIAVRDEKVRYATVLAATNAIHRAVKD*
Ga0070666_113159321	3300005335	Switchgrass Rhizosphere	MRFGMSELRDWALAAIDEAADQAQVNPVQRHLALRFALAFLANFADERWPFDNFWRALALPDGKVRCATVVAARNAIHRAVKP*
Ga0068868_1020992902	3300005338	Miscanthus Rhizosphere	MSELRSWALAAVDEVAEQSKTGPVQRPVSLRFALAFLANFAEDRWPFDNFWRAIATQDDKVRSATVVAARNAIHRAVRR*
Ga0070660_1001504874	3300005339	Corn Rhizosphere	MFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRRATVVAARNAIHRAVRRAS*
Ga0070661_1006281661	3300005344	Corn Rhizosphere	MRFGMSKLRERALAAVDEAAEQTANGPVQRALALCLSLAFLANFADERWPFDNFWRAIATRDEEVRSATVVAA
Ga0070668_1005457921	3300005347	Switchgrass Rhizosphere	MFHMRFGMSELRTRALAAVDEVADQALNGPVERHLALRFALAVLANFAEERWPFDNFWRAIATRDPKVRSATVTAARN
Ga0070675_1003069485	3300005354	Miscanthus Rhizosphere	MRFGMSELRKRALAAVDEVAEQAGSAPVERQLALRFALAFLSNFAEERWPFDSFWRAIAVRDEKIRRATVLAARNAIHRAVNG*
Ga0070675_1019531671	3300005354	Miscanthus Rhizosphere	ERTVVLYLFLMRRFGMTDLRERALAAVDEAADQANQGPVRRTIALRFTLAFLANFADERWPFDNFWQAIASSNDRARWQNANAARNAIRRSVRAERNDCSE*
Ga0070671_1000522492	3300005355	Switchgrass Rhizosphere	MRFGMTDLRRRALAAVDEVADQAKVSPVQRHLALRFALTFLANFADERWPFDNFWRAIALHDPNVRSATVVAAQNAIHRAVRE*
Ga0070671_1011765422	3300005355	Switchgrass Rhizosphere	PMRFGMSELRSWALAAVDEVAEQARSAPVERHLALRFALAFLANFAEDRWPLDNFWRAVALRDEKVRSATVAAARNAIHRAVKE*
Ga0070659_1003972731	3300005366	Corn Rhizosphere	MRFGMTELRDRALAAVDEAAELTKDGPVRRSLALRFALAFFANFAEDRWPFDNFWRAVAVTDEKVRVATAVAARNAIYRSVKS*
Ga0070667_1000815074	3300005367	Switchgrass Rhizosphere	MFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS*
Ga0070663_1002179103	3300005455	Corn Rhizosphere	MFHMRFGMSELWNWALAAVDEVAEQASIGPVQRSVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS*
Ga0070663_1005293891	3300005455	Corn Rhizosphere	LYLFSMSRFGMTDLRQRALAAVDEAAEQSNEGPVQRTLALRFTLAFLANFAGERWPFDNFWQAIGSKNDRARWQNANAARNAIRRAVGVDQRRDKGAGATEAE*
Ga0070662_1005710552	3300005457	Corn Rhizosphere	MRFGMSELRNWALAAIDEAAEQAQAQPLQRHLALRFALAFLANFTDERWPFDNFWRAIALRDEKVRCATVVAARNAIHRAVKE*
Ga0070735_101061964	3300005534	Surface Soil	MFHMRFGILELRNRALAAVDEVAEQAKSVPVERNLALRFALAFLANFADEKWPFDNFWRAIAVQDENVRAATVVAARNAIHRAVGE*
Ga0070686_1007109582	3300005544	Switchgrass Rhizosphere	MFHMRFGMSELWNWALAAVDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS*
Ga0070665_1022217841	3300005548	Switchgrass Rhizosphere	MTPFGMADLRRRALEAVDEIADRTTRGPVERTLALRFTLAFLANFADERWPFDNFWRAVVTKDDKVRSATVVAARNPIRRAVSNGK*
Ga0068855_1012809813	3300005563	Corn Rhizosphere	MFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSAT
Ga0066702_108418841	3300005575	Soil	MRDLRERALAAVDQAADEANEGPVRRTLALRFTLAFLANFADERWPFDNFWQAIARPNDRARWQNANAARNAIRRLVRAERNDRSQ*
Ga0068857_1016866161	3300005577	Corn Rhizosphere	MRFGMSELRDWALAAVDEVAEQAKERPVQRPLTLRFSLAFLANFADERWPFDNFWRAIATPDPKVRSATVLAARNAIHRAVNHHRQL*
Ga0068857_1018325692	3300005577	Corn Rhizosphere	MTDLRERALAAVDEAADQANDGPVRRSLALRFTLAFLANFADERWPFDNFWQAIASSNDRARWQNANAARNAIRRSVRAERNNCSE*
Ga0068857_1018428632	3300005577	Corn Rhizosphere	MSELRKRALAAVDEVAEQARSAPVERQLALRFALAFLSNFADERWPFDSFWRAVALRDEKIRYATVLAARNAIHRAVKD*
Ga0068856_1000831645	3300005614	Corn Rhizosphere	MRRFGMTELREWALAALDEAADQSKEGPVRRTLALRFALAFLANFADERWPFDNFWRSIATINERGRWQNANAARNAIRRAVTERGR*
Ga0068856_1012417382	3300005614	Corn Rhizosphere	MRFGMSELRNWALAAVDEVAEQAKSGPVQRHLALRFALAFLANLADERWPFDNFWRAVATPDPKVRSATVVAAQNAIHRAVRE*
Ga0079221_108531832	3300006804	Agricultural Soil	MFRMRFGMSELRNRALAAVDEVAEQAGAQPVQRHLALRFALAFLANYADERWPFDNFWRAIAVPDEKVRRATVIAAQNAIHRAVRD*
Ga0068865_1019119311	3300006881	Miscanthus Rhizosphere	MSELRNWALAAIDEAAEQAQAQPLQRHLALRFALAFLANFTDERWPFDNFWRAIALRDEKVRCATVVAARNAIHRA
Ga0105240_106261392	3300009093	Corn Rhizosphere	MSELRQWALAAVDEAADQSANGPVPRTLALRFALAFLANFADDRWPFDNFWRALATPNERRRWQNANAARNAIRRAVLDCDSRAVR*
Ga0105243_110765444	3300009148	Miscanthus Rhizosphere	MFHMRFGMSELRTRALAAVDEVADQTLNGPVERHLALRFALAVLANFAEERWPFDNFWRAIATRDPKVRSATVTAARNAIHRAVKG*
Ga0105248_105975123	3300009177	Switchgrass Rhizosphere	MFTNRSSPHIGLQMTPFGMADLRRRALEAVDEIADRTTRGPVERTLALRFTLAFLANFADERWPFDNFWRAVVTKDDKVRSATVVAARNPIRRAVSNGK*
Ga0105248_108245951	3300009177	Switchgrass Rhizosphere	MESGRCVLYLFPMRRFGLTELRERALAAVDEAADQAVQGPVRRSLALRFALAFLANLAEERWPFDNFWRAIATHDEKVRRATAVAARNAIRRAVGD*
Ga0105249_110243072	3300009553	Switchgrass Rhizosphere	MTELRERALAAIDEAADQSAKGPVQRTLALRFALAFLANFAEERWPFDNFWRAIAVHDEKVRCATTVAAQDAIRRAVS*
Ga0134122_107851062	3300010400	Terrestrial Soil	MSELRNWALAAIDDVAEQAKSGPVQRPVSLRFALAFLANFTEDRWPFDNFWRAIATEHEKVRTATVVAAQNAIHRGVKR*
Ga0151623_11363161	3300011264	Sediment	MAPKRLPATLHVLYLFRMRRFGMTDLRERALAAVDEAADQASDGPVRRTLALRFTLAFLANFADERWPFDNFWQSIASSNDRGRWQNANAARNAIRRSVRVERNDCSGH*
Ga0137366_103788812	3300012354	Vadose Zone Soil	LLIPDVIYVLYSFSMRFGMSDLREKALAAVDEVAEQAVMRPVQRHLALRFALAFLSNFADERWPFDNFWRAIATPDEKVRSATVLA
Ga0164305_116939462	3300012989	Soil	MRFGMTELRKRALAAVDEVAEQAQSGPVERHLALRFALAFLANFADERWPFDNFWRAIAVRDEKVRTATVVAARNAIHRAVRE*
Ga0157371_100498704	3300013102	Corn Rhizosphere	MFHMRFGMSELRNWALAANDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS*
Ga0157371_103146841	3300013102	Corn Rhizosphere	MRRFGMTELREWALAALDEAADQSKEGPVRRTLALRFALAFLANFADERWPFDNFWRSIATINERGRWQNANAARNAIRRAVTE
Ga0157371_110000651	3300013102	Corn Rhizosphere	MRFGMSKLRERALAAVDEAAEQTANGRVQRALALCLSLAFLANFADERWPFDNFWRAIATKDEEVRSATVVAARNAIRPSVQGRD*
Ga0157369_102473462	3300013105	Corn Rhizosphere	MSELRQWALAAVDEAADQSANGPVPRTLALRFALTFLANFADDRWPFDNFWRALATPNERRRWQNANAARNAIRRAVLDCDSRAVR*
Ga0157374_100219435	3300013296	Miscanthus Rhizosphere	MSELRNWALAAVDEVAEQARSAPVERHLALRFALAFLANFAEDRWPFDNFWRAVAVRDEKVRSATVVAARNAIHRAVKE*
Ga0157378_112285332	3300013297	Miscanthus Rhizosphere	MRFGMADLRARALAAVNETAERAAKNPLERTLALRFTLAFLANFAEERWPFDNFWRAVAVRDDKVRRATVLAARNAIRRSVT*
Ga0157378_122515362	3300013297	Miscanthus Rhizosphere	RIRFGMSEQRKRALAAVDEVAEQARSAPVERQLALRFALAFLSNFAEERWPFDSFWRAIAVRDEKVRYATVLAARNAIHRAVKD*
Ga0163163_117988482	3300014325	Switchgrass Rhizosphere	MRRFGMTELRERALAAVDEAADQSVNQPVQRTLALRFALAFLANFAEDRWPFDNFWRAIATQDEKVRRATVVAARNAIRRAV
Ga0182008_100607272	3300014497	Rhizosphere	MFRMRFGMSELRNRALAAVDEVAEQATSGPVQRHLALRFALAFLANFADERWPFDNFWRAIAVTDEKVRNATVVAARNAIHRAVKE*
Ga0167658_10129544	3300015195	Glacier Forefield Soil	LDEVAERTHQGPVERTLALRFTLAFLANFADDRWPFDNFWRSVATKDDKVRSATVVAARNAIRRAVEIRR*
Ga0132256_1028988211	3300015372	Arabidopsis Rhizosphere	MSELRDRALAAIDEVANQAEQGPVQRHLALRFALAFLANFAEERWPFDNFWRAIATPNERGRWQNANAARNAIKRAVRNN*
Ga0132255_1021906631	3300015374	Arabidopsis Rhizosphere	MRFGMSELRKRALAAVDKVAEQARSAPVERQLALRFTLAFLSNFAEERWPFDSFWRAIAVRDEKVRYATVLAATNAIHRAVKD*
Ga0190274_113560202	3300018476	Soil	MADLRARALAAVDEVAERTHNGPVERTLALRFTLAFLANFAEERWPFDSFWRPIAVRDEKVRYATVLAARNAIHRAV
Ga0207680_100930873	3300025903	Switchgrass Rhizosphere	MRFGMSELRKRALAAVDEVAEQARSAPVERQLALRFTLAFLSNFAEERWPFDSFWRAIAVRDEKVRYATVLAATNAIHRAVKD
Ga0207680_100992123	3300025903	Switchgrass Rhizosphere	MFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS
Ga0207705_100852974	3300025909	Corn Rhizosphere	MRFALSDLRDRALAPVDEGADQAGNDPVTRSLALRFALAFLANIAEERWPFDNFWRTIATEDDKVRSATAVAARNAIRRAVARN
Ga0207705_103398152	3300025909	Corn Rhizosphere	MRFGMSKLRERALAAVDEAAEQTANGPVQRALALCLSLAFLANFADERWPFDNFWRAIATRDEEVRSATVVAARNAIRPSVQGRD
Ga0207695_111733382	3300025913	Corn Rhizosphere	MFRMRFGMSELRKRALAAVDEVAEQARFAPVERHLALRFALAFLANFADERWPFDNFWRAVALPDEKARGATVVAARNAIHRAVKD
Ga0207657_102264062	3300025919	Corn Rhizosphere	MFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRRATVVAARNAIHRAVRRAS
Ga0207650_118473341	3300025925	Switchgrass Rhizosphere	SMRFGMSELRDWALAAVDEVAEQAKERPVQRPLTLRFSLAFLANFADERWPFDNFWRAIATPDPKVRSATVLAARNAIHRAVNHHRQL
Ga0207701_103984442	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRFGMSELRNWALAAIDEAAEQAQAQPLQRHLALRFALAFLANFTDERWPFDNFWRAIALRDEKVRCATVVAARNAIHRAVKE
Ga0207644_100468052	3300025931	Switchgrass Rhizosphere	MRFGMTDLRRRALAAVDEVADQAKVSPVQRHLALRFALTFLANFADERWPFDNFWRAIALHDPNVRSATVVAAQNAIHRAVRE
Ga0207711_106792202	3300025941	Switchgrass Rhizosphere	MTPFGMADLRRRALEAVDEIADRTTRGPVERTLALRFTLAFLANFADERWPFDNFWRAVVTKDDKVRSATVVAARNPIRRAVSNGK
Ga0207661_103480801	3300025944	Corn Rhizosphere	FGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS
Ga0207679_109011001	3300025945	Corn Rhizosphere	MTELRDRALAAVDEAAELTKDGPVRRSLALRFALAFFANFAEDRWPFDNFWRAVAVTDEKVRVATAVAARNAIY
Ga0207667_102113043	3300025949	Corn Rhizosphere	MSELRQWALAAVDEAADQSANGPVPRTLALRFALAFLANFADDRWPFDNFWRALATPNERRRWQNANAARNAIRRAVLDCDSRAVR
Ga0207640_102158844	3300025981	Corn Rhizosphere	RQFVLHMFRMRFGMSELRSWALAAVDEVAEQSKTGPVQRPVSLRFALAFLANFAEDRWPFDNFWRAIATQDDKVRSATVVAARNAIHRAVRR
Ga0207677_104989953	3300026023	Miscanthus Rhizosphere	QVGLNVLLMFRMRFGMSELRNRALAAVDEVAEQANSGPVQRHLALRFALAFLANFADERWPFDNFWRAVALSDEKVRNATVLAARNAIHRAVRD
Ga0207677_108987662	3300026023	Miscanthus Rhizosphere	TKADDPRSLVLYMFHMRFGMSELRNWALAAIDEVAEQASIGPVQRPVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS
Ga0207678_103357883	3300026067	Corn Rhizosphere	MFHMRFGMSELWNWALAAVDEVAEQASIGPVQRSVSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS
Ga0207702_100859991	3300026078	Corn Rhizosphere	MRRFGMTELREWALAALDEAADQSKEGPVRRTLALRFALAFLANFADERWPFDNFWRSIATINERGRWQNANAARNAIRRAVTERGR
Ga0207674_107091222	3300026116	Corn Rhizosphere	MRFGMSELRDWALAAVDEVAEQAKERPVQRPLTLRFSLAFLANFADERWPFDNFWRAIATPDPKVRSATVLAARNAIHRAVNHHRQL
Ga0209438_11907702	3300026285	Grasslands Soil	MTRFGMADLRARALAAVDEVAERTHNGPVERTLALRFTLAFLANFADERWPFDNFWRAIATQDEKVRRATVVGARNAIRRAVTSRDVR
Ga0209647_10506652	3300026319	Grasslands Soil	MRFGMSDLRGRALAAIDEATERSQNGPIERTLALRFTLAFLANFADDRWPFDNFWRAVAIPDEKVRRATVVAACNAVHRAVQD
Ga0209059_12250071	3300026527	Soil	MRDLRERALAAVDQAADEANEGPVRRTLALRFTLAFLANFADERWPFDNFWQAIARPNDRARWQNANAARNAIRRLVRAERNDRSQ
Ga0307408_1008626463	3300031548	Rhizosphere	MFHMRFGMSELRTRALAAVDEVADQALNGPVERHLALRFALAVLANFAEERWPFDNFWRAIATRDPKVRSATVTAARNAIHRAVKG
Ga0310813_117286422	3300031716	Soil	MFHMRFGMSELRTRALAAVDEVADQALNGPVERHLALRFALAVLANFAEERWPFDNFWRAIATRDPKVRSATVTAARNAIHR
Ga0307405_101451813	3300031731	Rhizosphere	MFHTRFGMSELRTRALAAVDEVADQALNGPVKRHLALRFALAFLANFAEERWPFDNFWRAIATRDPKVRAATVTAARNAIHRAVKG
Ga0307405_109344221	3300031731	Rhizosphere	TGAHGDVFVLHLFRMRFGMSELRNWALAAVDEVAEQARTQPVHRHLALRFALAFLANFADERWPFDNFWRAIATPDEKVRRATVVAARNAIHRAVRD
Ga0307410_101133482	3300031852	Rhizosphere	MFHMRFGMSELRTRALAAVDEVADQAMNGPIERHLALRFALAFLANFAEERWPFDNFWRAIATRDPKVRAATVTAARNAIHRAVKG
Ga0307407_113489992	3300031903	Rhizosphere	RFGMSELRTRALAAVEVADQAMNGPIERHLALRFALAFLANFAEERWPFDNFWRAIATRDPKVRAATVTAARNAIHRAVKG
Ga0308175_1006138203	3300031938	Soil	MSELRNWALAAVDEVAEQASIGPVQRPGSLRFALAFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS
Ga0308175_1006679642	3300031938	Soil	MFRMRFGMSDLRSRALAAIDEVAEQAKSGPVQRPLALRFTLAFLANFAEERWPFDNFWRAVATSDPKVRSATVVAAQNAIHRVVKR
Ga0308174_104253202	3300031939	Soil	MFRMRFGMSDLRSRALAAIDEVAEQAKSGPVQRPLALRFTLAFLANFAEERWPFDNFWRAVAIYDSKVRSATVVAAQNAIHRVVKR
Ga0308176_102381904	3300031996	Soil	MFHMRFGMSELRSWALAAIDEVAEQASIGPVQRPVSLRFALGFLANFAEERWPFDNFWRAIATEDPKVRSATVVAARNAIHRAVRRAS
Ga0308176_126525051	3300031996	Soil	MRRFGMTELRERALAAVDEAAEQTKEGPVRRSLALRFALAFLANFAEDRWPFDNFWRAVAVPDEKVRVATAVAAKNAIWRVVRAGR
Ga0307414_109249882	3300032004	Rhizosphere	VFVLHLFRMRFGMSELRNWALAAVDEVAEQARTQPVHRHLALRFALAFLANFADERWPFDNFWRAIATPDEKVRRATVVAARNAIHR
Ga0307411_101115612	3300032005	Rhizosphere	MFHMRFGMSELRTRALAAVEVADQAMNGPIERHLALRFALAFLANFAEERWPFDNFWRAIATRDPKVRAATVTAARNAIHRAVKG
Ga0308173_114597442	3300032074	Soil	EGQPFNDRAVDEAADQTAHGPVHRSLALRFTLAFLSNFADERWPFDNFWRAIATPNERGRWQNANAARNAIRRAVSQRD
Ga0326721_101270552	3300032080	Soil	MFRMRFGMSELRNWALAAVDEAAEQAKAGPVPRPVSLRFALAFLSNFAEDRWPFDNFWRAIATKDDKVRGATVVAARNAIHRAVTR
Ga0307415_1015002622	3300032126	Rhizosphere	MRRFGMSDLRSRALAAVDEAAEKAAQGPVQRTVALRFALMFLANFAEERWPFDNYWRAIALRDPKVRGATVTAAKNAIHRAVHACD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104734

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences