NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104711

Metagenome / Metatranscriptome Family F104711

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104711
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence MKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
Number of Associated Samples 77
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 40.00 %
% of genes near scaffold ends (potentially truncated) 42.00 %
% of genes from short scaffolds (< 2000 bps) 94.00 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (91.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(32.000 % of family members)
Environment Ontology (ENVO) Unclassified
(84.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(88.000 % of family members)


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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1JGI25908J49247_100395822
2JGI25909J50240_10522162
3JGI25911J50253_101083723
4Ga0007787_105725582
5Ga0007751_100444092
6Ga0070374_100631344
7Ga0049081_100872393
8Ga0049081_101827071
9Ga0049082_102355032
10Ga0079957_12244942
11Ga0075464_103175503
12Ga0075464_109075762
13Ga0114880_12423151
14Ga0114973_101254514
15Ga0114973_101861482
16Ga0114973_103859362
17Ga0114980_102333391
18Ga0114963_101500063
19Ga0114963_105525173
20Ga0114968_103762873
21Ga0114966_106668862
22Ga0114974_102417834
23Ga0114976_103734593
24Ga0114972_107548572
25Ga0136644_102542262
26Ga0129333_109167171
27Ga0129336_101917972
28Ga0133913_133921641
29Ga0138289_12225933
30Ga0164293_100868283
31Ga0164292_109311521
32Ga0172367_101721661
33Ga0172367_104267351
34Ga0172373_103539522
35Ga0172373_109379201
36Ga0172372_103733082
37Ga0172362_104169962
38Ga0172370_103022751
39Ga0170791_151826341
40Ga0170791_152063081
41Ga0177922_105983991
42Ga0177922_106650981
43Ga0181362_10423911
44Ga0181362_10632711
45Ga0181362_10664552
46Ga0181362_10673582
47Ga0181365_10638321
48Ga0181356_11139843
49Ga0181356_11218241
50Ga0181356_11359473
51Ga0181358_12138741
52Ga0181357_12855094
53Ga0181348_12553202
54Ga0181348_12952361
55Ga0181348_12967601
56Ga0169931_109849551
57Ga0181359_10917992
58Ga0181359_11150252
59Ga0181359_11417672
60Ga0181359_12069143
61Ga0194113_100461463
62Ga0194113_101272556
63Ga0194112_1002477215
64Ga0211736_108490192
65Ga0211726_100357523
66Ga0194115_102381623
67Ga0194115_103537651
68Ga0194130_102130432
69Ga0194117_103048022
70Ga0181354_11501643
71Ga0181354_11627282
72Ga0181354_12393372
73Ga0181351_12004892
74Ga0214917_100834032
75Ga0214923_103450953
76Ga0208916_101280962
77Ga0208974_10521484
78Ga0208975_12039192
79Ga0209769_12482942
80Ga0209443_11499742
81Ga0209297_11366024
82Ga0209087_11593092
83Ga0209085_11231871
84Ga0209355_12293652
85Ga0209296_10587972
86Ga0209598_101179432
87Ga0209829_101730641
88Ga0209358_103160284
89Ga0209550_101017994
90Ga0209400_12053222
91Ga0209401_12976032
92Ga0247834_12431532
93Ga0247843_12412011
94Ga0315293_104089772
95Ga0315909_108249791
96Ga0315274_102141385
97Ga0315905_112700272
98Ga0315295_116873442
99Ga0335036_0456211_331_474
100Ga0335065_0389660_749_856
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.56%    β-sheet: 9.30%    Coil/Unstructured: 58.14%
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Variant

510152025303540MKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
9.0%91.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater Lake
Freshwater Lake
Freshwater
Lake
Sediment
Freshwater
Aqueous
Freshwater To Marine Saline Gradient
32.0%5.0%15.0%8.0%22.0%6.0%4.0%3.0%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25908J49247_1003958223300003277Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKGKK*
JGI25909J50240_105221623300003393Freshwater LakeMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKK*
JGI25911J50253_1010837233300003411Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWK
Ga0007787_1057255823300004240Freshwater LakeMKKQEEQKLVKLLKALYKKNWAFNWKGQDNGFELNLQVWKGKK*
Ga0007751_1004440923300004794Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELNLQVWKGKK*
Ga0070374_1006313443300005517Freshwater LakeMTRKDENKLVSLLKKLYGKDWSFNWKGQNNGFELILQVWKGKK*
Ga0049081_1008723933300005581Freshwater LenticMKKLEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*
Ga0049081_1018270713300005581Freshwater LenticMKKREEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*
Ga0049082_1023550323300005584Freshwater LenticMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELTLQVWKGKNE*
Ga0079957_122449423300005805LakeMKKTDEQKLIKLLKSLYGKNWLFNWQGQDNGFELTLQVWKGKK*
Ga0075464_1031755033300006805AqueousMKKLEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*KAHFIF*
Ga0075464_1090757623300006805AqueousMKKREEQKLVKLLKSLYGKNWLFNWQGQDNGFELT
Ga0114880_124231513300008450Freshwater LakeMKRKEEQKLVKLLKSLYGKYWLFNWQGQDNGFELTVQVWKEKK*
Ga0114973_1012545143300009068Freshwater LakeMTKKEETKLVSLLKRLYKKDWSFNWKGQDNGFELTLQVWKGKK*
Ga0114973_1018614823300009068Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWK
Ga0114973_1038593623300009068Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*
Ga0114980_1023333913300009152Freshwater LakeQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*
Ga0114963_1015000633300009154Freshwater LakeMTKKDEAKLVKLLKSLYKKNWAFNWKGQDNGFELTLNVWKGKL*
Ga0114963_1055251733300009154Freshwater LakeMTKKDEAKLVKLLKTLYKKNWAFNWKGQDNGFELTLNVWKGKL*
Ga0114968_1037628733300009155Freshwater LakeEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*
Ga0114966_1066688623300009161Freshwater LakeMKKQEEKKLVKLLKSLYGKNWLFNWKGQDNGFELNL
Ga0114974_1024178343300009183Freshwater LakeMTKKEETKLVSLLKKLYKKDWSFNWKGQDNGFELTLQVWKGKK*
Ga0114976_1037345933300009184Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQV
Ga0114972_1075485723300009187Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQ
Ga0136644_1025422623300010334Freshwater LakeMTKKDEAKLVKLLKTLYKKNWAFNWKGQDNGFELTLNVWK
Ga0129333_1091671713300010354Freshwater To Marine Saline GradientMKKTDEQKLIKLLKSLYGKNWLFNWQGQDNGFELILQVWKGKK*
Ga0129336_1019179723300010370Freshwater To Marine Saline GradientMKKQEEKKLVKLLKSLYGKNWLFNWKGQDNGFELNLQVWKGKK*
Ga0133913_1339216413300010885Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKEKK*
Ga0138289_122259333300012763Freshwater LakeMTKKEETKLVSLLKKLYKKDWSFNWKGQDNGFELNLQVWKGKK*
Ga0164293_1008682833300013004FreshwaterMKKKEELKLVKLLKSLYGKNWLFNWQGQDNGFELTLQVWKGKK*
Ga0164292_1093115213300013005FreshwaterMKKLEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVW
(restricted) Ga0172367_1017216613300013126FreshwaterMKKTDEQKLVKLLKSLYGKNWLFNWRGQDNGFELTLQVWKGKKCTN*
(restricted) Ga0172367_1042673513300013126FreshwaterMKKKDEQKLVKLLKSLYGKNWLFNWQGQDNGFALTLQVWKGKK*
(restricted) Ga0172373_1035395223300013131FreshwaterMKKKEEQKLVNLLKSLYGKNWLFNWRGQDNGFELTLQVWKGKKCTN*
(restricted) Ga0172373_1093792013300013131FreshwaterMMKKKDEQKLVKLLKSLYGKNWLFNWKGQDNGFELILNVRKG*
(restricted) Ga0172372_1037330823300013132FreshwaterMKKKEEQKLVNLLKSLYGKNWLFNWRGQDNGFELTLQVWKGKK*
(restricted) Ga0172362_1041699623300013133SedimentMKKKEEQKLVKLLKSLYGKKWLFNWQGQDNGFALTLQVWKGKK*
(restricted) Ga0172370_1030227513300013136FreshwaterDEQKLVKLLKSLYGKNWLFNWKGQDNGFELILNVKKG*
Ga0170791_1518263413300013295FreshwaterKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK*
Ga0170791_1520630813300013295FreshwaterNKGKTMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKK*
Ga0177922_1059839913300013372FreshwaterTDEQKLVKLLKSLYGKNWLFNWQGQDNGFELTLQVWKGKK*
Ga0177922_1066509813300013372FreshwaterMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELN
Ga0181362_104239113300017723Freshwater LakeEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKGKK
Ga0181362_106327113300017723Freshwater LakeQNKGRKMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKK
Ga0181362_106645523300017723Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELT
Ga0181362_106735823300017723Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKGKKXK
Ga0181365_106383213300017736Freshwater LakeMKKLEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTV
Ga0181356_111398433300017761Freshwater LakeMTRKDENKLVSLLKKLYGKDWSFNWKGQNNGFELI
Ga0181356_112182413300017761Freshwater LakeMKKQAEQKLVKLLKSLYGKNWLFNWQGQDNGFELTVQVW
Ga0181356_113594733300017761Freshwater LakeMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQV
Ga0181358_121387413300017774Freshwater LakeTMKRKEEQKLVKLLKSLYGKYWLFNWQGQDNGFELTLQVWKGKNE
Ga0181357_128550943300017777Freshwater LakeMKKKEEQKLIKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKNE
Ga0181348_125532023300017784Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELTVQVWKGKKXK
Ga0181348_129523613300017784Freshwater LakeQRKTMKRKEEQKLVKLLKSLYGKDWLFNWQGQDKGFELNLQVWKGKK
Ga0181348_129676013300017784Freshwater LakeRKTMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQEWKEKK
Ga0169931_1098495513300017788FreshwaterKKEEQKLVNLLKSLYGKNWLFNWRGQDNGFELTLQVWKGKKCTN
Ga0181359_109179923300019784Freshwater LakeMKKQEEQKLVKLLKALYKKNWAFNWKGQDNGFELNLQVWKGKK
Ga0181359_111502523300019784Freshwater LakeMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKK
Ga0181359_114176723300019784Freshwater LakeMKKREEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
Ga0181359_120691433300019784Freshwater LakeMTRKDENKLVSLLKKLYGKDWSFNWKGQNNGFELILQVWKGKK
Ga0194113_1004614633300020074Freshwater LakeMKRKDEQKLVKLLKSLYGKNWLFNWKGQDNGFELILNVWKG
Ga0194113_1012725563300020074Freshwater LakeMKKKDENKLVKLLKKLYGNDWSFTWDSQDHGFNLNLQVWKGEKYNDKR
Ga0194112_10024772153300020109Freshwater LakeMKKKDEQKLVKLLKSLYGKNWLFNWKGQDNGFELILNVWKG
Ga0211736_1084901923300020151FreshwaterMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKKXKTHSIF
Ga0211726_1003575233300020161FreshwaterMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWK
Ga0194115_1023816233300020183Freshwater LakeMKKKEEQKLVKLLKSLYGKNWLFNWQGQDNGFALTLQVWKGKK
Ga0194115_1035376513300020183Freshwater LakeMKKKEEQKLVNLLKSLYGKNWLFNWRGQDNGFALTLQVWKGKK
Ga0194130_1021304323300021376Freshwater LakeMKKKDEQKLVKLLKSLYGKNWFFNWRGQDNGFELTLQVSKERKL
Ga0194117_1030480223300021424Freshwater LakeMKKKDEQKLVKLLKSLYGKNWFFNWKGQDNGFELILNVMKKGK
Ga0181354_115016433300022190Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKGKK
Ga0181354_116272823300022190Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKEKK
Ga0181354_123933723300022190Freshwater LakeMTKKEETKLISLLKKLYGKDWSFNWKGQDNGFELILQVWKGKNE
Ga0181351_120048923300022407Freshwater LakeMKRKEEQKLVKLLKSLYGKYWLFNWQGQDNGFELTVQVWKGKK
Ga0214917_1008340323300022752FreshwaterMKKREEQKLVKLLKSLYGKNWLFNWQGQDNGFELTLQVWKGKKXKVHFIF
Ga0214923_1034509533300023179FreshwaterTMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
Ga0208916_1012809623300025896AqueousMKKLEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
Ga0208974_105214843300027608Freshwater LenticMKKREEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKKXKAHFIF
Ga0208975_120391923300027659Freshwater LenticKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKK
Ga0209769_124829423300027679Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELNLQVWKGKK
Ga0209443_114997423300027707Freshwater LakeMTRKEENKLVSLLKKLYGKDWSFNWKGQNNGFELILQVWKGKK
Ga0209297_113660243300027733Freshwater LakeMKKLEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKKXKAHFIF
Ga0209087_115930923300027734Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
Ga0209085_112318713300027741Freshwater LakeMTKKDEAKLVKLLKTLYKKNWAFNWKGQDNGFELTLNVW
Ga0209355_122936523300027744Freshwater LakeMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKGKKXKAHSI
Ga0209296_105879723300027759Freshwater LakeMTKKEETKLVSLLKKLYKKDWSFNWKGQDNGFELTLQVWKGKK
Ga0209598_1011794323300027760Freshwater LakeMKKLEEKKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKKXKAHFIF
Ga0209829_1017306413300027777Freshwater LakeMTKKDEAKLVKLLKTLYKKNWAFNWKGQDNGFELTLNVWKGKLXK
Ga0209358_1031602843300027804Freshwater LakeQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
Ga0209550_1010179943300027892Freshwater LakeMKKQEEQKLVKLLKALYKKNWAFDWKGQDNGFELNLQVWKGKKXLKQKNKY
Ga0209400_120532223300027963Freshwater LakeMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGK
Ga0209401_129760323300027971Freshwater LakeEEKKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKK
(restricted) Ga0247834_124315323300027977FreshwaterMKKQDEQKLVKLLKALYKKNWAFDWKGQDNGFELTLQVWKGKK
(restricted) Ga0247843_124120113300028569FreshwaterMTKKEETKLAGLLKKLYGKDWSFNWKGQNNGFELILQVWKGKK
Ga0315293_1040897723300031746SedimentMTKKDETKLISLLKKLYGKDWSFNWKGQDNGFELTLQVWKGKK
Ga0315909_1082497913300031857FreshwaterMKKREEQKLVKLLKSLYGKNWLFNWQGQDNGFELNLQVWKGKKXKAH
Ga0315274_1021413853300031999SedimentMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELTVQVWKGKKXKAHFIF
Ga0315905_1127002723300032092FreshwaterMKRKEEQKLVKLLKSLYGKDWLFNWQGQDNGFELNLQV
Ga0315295_1168734423300032156SedimentMKRKEEQKLVKLLKSLYGKNWLFNWQGQDNGFELTVQVWKGKK
Ga0335036_0456211_331_4743300034106FreshwaterMTKKEETKLISLLKKLYGKDWSFNWKGQENGFELILQVWKGKNEKSI
Ga0335065_0389660_749_8563300034200FreshwaterLVSLLKKLYGKNWSFNWKGQNNGFELILQVWKGKK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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