NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104631

Metagenome Family F104631

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104631
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence VPVTVVSRTTYDASQPIRLTRYVYRADRLRLRHEMGSIPIT
Number of Associated Samples 73
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 97.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (51.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(54.000 % of family members)
Environment Ontology (ENVO) Unclassified
(79.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(54.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 34.78%    Coil/Unstructured: 65.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF11139SfLAP 13.00
PF13411MerR_1 5.00
PF01070FMN_dh 3.00
PF07702UTRA 3.00
PF08044DUF1707 1.00
PF07730HisKA_3 1.00
PF14306PUA_2 1.00
PF01670Glyco_hydro_12 1.00
PF00211Guanylate_cyc 1.00
PF00578AhpC-TSA 1.00
PF00903Glyoxalase 1.00
PF13602ADH_zinc_N_2 1.00
PF04542Sigma70_r2 1.00
PF02518HATPase_c 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0069Glutamate synthase domain 2Amino acid transport and metabolism [E] 3.00
COG1304FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomeraseEnergy production and conversion [C] 3.00
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.00
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 1.00
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 1.00
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 1.00
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 1.00
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 1.00
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 1.00
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 1.00
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms51.00 %
UnclassifiedrootN/A49.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005468|Ga0070707_101981480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans550Open in IMG/M
3300005764|Ga0066903_107941755All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria545Open in IMG/M
3300005764|Ga0066903_108947552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae507Open in IMG/M
3300006028|Ga0070717_10043851All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3652Open in IMG/M
3300006059|Ga0075017_101480022Not Available535Open in IMG/M
3300006854|Ga0075425_100492876All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1411Open in IMG/M
3300010048|Ga0126373_11858612Not Available665Open in IMG/M
3300010048|Ga0126373_12716928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans552Open in IMG/M
3300010361|Ga0126378_10379498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1525Open in IMG/M
3300010361|Ga0126378_11958696Not Available667Open in IMG/M
3300010366|Ga0126379_10234423All Organisms → cellular organisms → Bacteria1794Open in IMG/M
3300010366|Ga0126379_13338742Not Available537Open in IMG/M
3300010376|Ga0126381_103689628Not Available599Open in IMG/M
3300010376|Ga0126381_104211646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans558Open in IMG/M
3300010398|Ga0126383_11057886Not Available901Open in IMG/M
3300012971|Ga0126369_13326238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans527Open in IMG/M
3300013105|Ga0157369_12486569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans524Open in IMG/M
3300016270|Ga0182036_11371045Not Available591Open in IMG/M
3300016319|Ga0182033_11864063Not Available546Open in IMG/M
3300016341|Ga0182035_10603898All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300016341|Ga0182035_10949589All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300016357|Ga0182032_10292159Not Available1284Open in IMG/M
3300016371|Ga0182034_12003596Not Available512Open in IMG/M
3300016387|Ga0182040_11272936All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300016404|Ga0182037_11583759All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans582Open in IMG/M
3300016404|Ga0182037_12160256Not Available501Open in IMG/M
3300016422|Ga0182039_11369628Not Available642Open in IMG/M
3300016445|Ga0182038_12123455Not Available509Open in IMG/M
3300017973|Ga0187780_11190214Not Available558Open in IMG/M
3300025916|Ga0207663_10411938All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans houttuyneae1036Open in IMG/M
3300025922|Ga0207646_10989616All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300025922|Ga0207646_11670284All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans548Open in IMG/M
3300031543|Ga0318516_10074659All Organisms → cellular organisms → Bacteria1885Open in IMG/M
3300031544|Ga0318534_10501489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces693Open in IMG/M
3300031545|Ga0318541_10261954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria961Open in IMG/M
3300031546|Ga0318538_10056723Not Available1931Open in IMG/M
3300031546|Ga0318538_10071998All Organisms → cellular organisms → Bacteria1739Open in IMG/M
3300031564|Ga0318573_10444967All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces697Open in IMG/M
3300031564|Ga0318573_10818068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans500Open in IMG/M
3300031572|Ga0318515_10060459All Organisms → cellular organisms → Bacteria1927Open in IMG/M
3300031640|Ga0318555_10128552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1349Open in IMG/M
3300031640|Ga0318555_10192310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces exfoliatus1099Open in IMG/M
3300031640|Ga0318555_10509077Not Available652Open in IMG/M
3300031679|Ga0318561_10032288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae2536Open in IMG/M
3300031679|Ga0318561_10521058All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia654Open in IMG/M
3300031681|Ga0318572_10212170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1132Open in IMG/M
3300031682|Ga0318560_10066313All Organisms → cellular organisms → Bacteria1812Open in IMG/M
3300031713|Ga0318496_10659356Not Available578Open in IMG/M
3300031736|Ga0318501_10422574Not Available722Open in IMG/M
3300031744|Ga0306918_10113621Not Available1950Open in IMG/M
3300031744|Ga0306918_10346239All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1152Open in IMG/M
3300031747|Ga0318502_10561984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces exfoliatus686Open in IMG/M
3300031748|Ga0318492_10151552Not Available1170Open in IMG/M
3300031763|Ga0318537_10300807Not Available594Open in IMG/M
3300031765|Ga0318554_10293918Not Available924Open in IMG/M
3300031765|Ga0318554_10513249Not Available678Open in IMG/M
3300031768|Ga0318509_10538784All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria651Open in IMG/M
3300031769|Ga0318526_10371507Not Available585Open in IMG/M
3300031771|Ga0318546_10476388All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium875Open in IMG/M
3300031771|Ga0318546_11076144Not Available565Open in IMG/M
3300031777|Ga0318543_10077073All Organisms → cellular organisms → Bacteria1406Open in IMG/M
3300031777|Ga0318543_10533591Not Available526Open in IMG/M
3300031779|Ga0318566_10001764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7064Open in IMG/M
3300031779|Ga0318566_10504003Not Available593Open in IMG/M
3300031780|Ga0318508_1033148Not Available1318Open in IMG/M
3300031796|Ga0318576_10196936Not Available947Open in IMG/M
3300031797|Ga0318550_10152540All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces exfoliatus1110Open in IMG/M
3300031819|Ga0318568_10489117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces exfoliatus767Open in IMG/M
3300031821|Ga0318567_10640231Not Available604Open in IMG/M
3300031832|Ga0318499_10400614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
3300031835|Ga0318517_10153956All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1028Open in IMG/M
3300031859|Ga0318527_10178799Not Available895Open in IMG/M
3300031879|Ga0306919_10106308Not Available1984Open in IMG/M
3300031879|Ga0306919_10273237Not Available1277Open in IMG/M
3300031890|Ga0306925_10994133Not Available856Open in IMG/M
3300031896|Ga0318551_10392645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces exfoliatus788Open in IMG/M
3300031897|Ga0318520_10091422All Organisms → cellular organisms → Bacteria1692Open in IMG/M
3300031897|Ga0318520_10792358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria594Open in IMG/M
3300031897|Ga0318520_10813408Not Available586Open in IMG/M
3300031897|Ga0318520_10877921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans564Open in IMG/M
3300031910|Ga0306923_10431777All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1496Open in IMG/M
3300031910|Ga0306923_12176418Not Available557Open in IMG/M
3300031942|Ga0310916_10427612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1127Open in IMG/M
3300032001|Ga0306922_11752353Not Available613Open in IMG/M
3300032008|Ga0318562_10733596Not Available567Open in IMG/M
3300032010|Ga0318569_10346915All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300032035|Ga0310911_10706828Not Available584Open in IMG/M
3300032042|Ga0318545_10055429Not Available1347Open in IMG/M
3300032044|Ga0318558_10349895Not Available733Open in IMG/M
3300032054|Ga0318570_10548945Not Available527Open in IMG/M
3300032063|Ga0318504_10607416All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.525Open in IMG/M
3300032065|Ga0318513_10629752Not Available525Open in IMG/M
3300032076|Ga0306924_12022641Not Available593Open in IMG/M
3300032076|Ga0306924_12078209Not Available583Open in IMG/M
3300032076|Ga0306924_12265612Not Available552Open in IMG/M
3300032094|Ga0318540_10527033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii570Open in IMG/M
3300032261|Ga0306920_101163937Not Available1116Open in IMG/M
3300032261|Ga0306920_101822411All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces exfoliatus858Open in IMG/M
3300032261|Ga0306920_102091397Not Available790Open in IMG/M
3300033290|Ga0318519_10295098Not Available948Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil54.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil10.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.00%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031780Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070707_10198148013300005468Corn, Switchgrass And Miscanthus RhizospherePVTVVSRTTYDASQPIRLSRHIYRADRVRLRHEMGSIPVI*
Ga0066903_10794175513300005764Tropical Forest SoilRTAYDTARPIRLTEYVYRANRIWLRHEIGSIPLL*
Ga0066903_10894755223300005764Tropical Forest SoilIETAFFRLSSVVPVTVVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAT*
Ga0070717_1004385143300006028Corn, Switchgrass And Miscanthus RhizosphereVVSRTAYDTARPVRLTQYVYRADRIRLRHEMGSVPLP*
Ga0075017_10148002213300006059WatershedsVVPVTVVSRTAYDASRPIRLTRYVYRADQVRLRHEMGSIPHGQ*
Ga0075425_10049287623300006854Populus RhizosphereLASPVPVTVVSRTTYDTTQPIRLTRYVYRADRLRLRHEMGNIPAT*
Ga0126373_1185861213300010048Tropical Forest SoilEAEFFQLATGIPLTVVSRTVYDASRPIRLTRYVYRADQVRLRHEMGSIPRGN*
Ga0126373_1271692813300010048Tropical Forest SoilGPNETAFFQLSSPVPVTVVSRTTYDASQPIRLTRYVYRADRLRLRHDMGTIPIR*
Ga0126378_1037949813300010361Tropical Forest SoilAAFFELLRPVPVTVVSRTTYDATQPVRLTKYVYRSDRVRLRHEMGCIPVQ*
Ga0126378_1195869623300010361Tropical Forest SoilATGIPLTVVSRIAYDASRPIRLTMYVYRADQVRLRHEMGSIPRGN*
Ga0126379_1023442333300010366Tropical Forest SoilVPVTVVSRTTYDASQPIRLTRYVYRADRLRLRHEMGSIPIT*
Ga0126379_1333874223300010366Tropical Forest SoilGIPLTVVSRTAYDAARPIRLTMYVYRADQVRLRHEMGSIPRGT*
Ga0126381_10368962813300010376Tropical Forest SoilVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGNIPVT*
Ga0126381_10421164613300010376Tropical Forest SoilTAFFQLASPVPVTVVSRTTFDTSRAIRLTRYVYRADRLLLRHEMGSIPLI*
Ga0126383_1105788623300010398Tropical Forest SoilFQLATGIPLTVVSRTAYDASRPIRLTMYVYRADQVRLRHEMGSIPQGN*
Ga0126369_1332623823300012971Tropical Forest SoilVSRTTYDSSQPIRLTRYVYRADRLRLRHEMGTIPVR*
Ga0157369_1248656923300013105Corn RhizosphereQLPRPVPVTVVNRTVYDASQPVRLTRYVYRSDRLRLRHEMGSIPVM*
Ga0182036_1137104523300016270SoilVVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0182033_1186406313300016319SoilSRTTYDNSQPVQLTRYVYRADRLRLRHEMGSIPPT
Ga0182035_1060389813300016341SoilLASPVPVTVVSRTTFDTAQPIRLTRYVYRADRLRLRHEMGSIPLI
Ga0182035_1094958913300016341SoilTETAFFQLASPVPVTVVSRTTFDTAQPIRLTRYVYRADRLRLRHEMGSIPSSSPSRSSR
Ga0182032_1029215913300016357SoilFQLASPVPVTVVSRTTFDTSRPIRLTGYVYRADRLRLRHEMGSIPLT
Ga0182034_1200359613300016371SoilFFQLASVVPVTVVRRTAYDASRPIRLTMYVYRADQVRLRHEMGSIPHGQ
Ga0182040_1127293623300016387SoilVVPVTVVSRTTYDDSRPVQLTRYVYRADRLRLRHEMGSVPVT
Ga0182037_1158375913300016404SoilLASPVPVTVVSRTTFDTSRPIRLTGYVYRADRLRLRHEMGRIPLI
Ga0182037_1216025613300016404SoilVVSRTAYDTAGPIRLTQYIYRADRVRIRHELGTIPAAQPR
Ga0182039_1136962823300016422SoilFQLATGIPLTVVSRTVYDAARPIRLTMYVYRADQVRLRHEMGSIPQGK
Ga0182038_1212345513300016445SoilPIPVTVVSRTAYDTTRPIRLTQYVYRADRVRLKHQMGTVPAGSSPGP
Ga0187780_1119021413300017973Tropical PeatlandEFFGLASVVPLTVVSRTAYDMSRPIRLTLYVYRADQVRLRHEMGSISHGQ
Ga0207663_1041193823300025916Corn, Switchgrass And Miscanthus RhizosphereTVVNRTAYDASQPVRLTRYVYRSDRLRLRHEMGTIPPK
Ga0207646_1098961613300025922Corn, Switchgrass And Miscanthus RhizosphereTVVSRTTFDASQPIRLTRYVYRADRLRLRHEMGSIPFI
Ga0207646_1167028423300025922Corn, Switchgrass And Miscanthus RhizospherePVTVVSRTTYDASQPIRLSRHIYRADRVRLRHEMGSIPVI
Ga0318516_1007465943300031543SoilSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318534_1050148923300031544SoilIETAFFRLSSVVPVTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318541_1026195423300031545SoilPRLSTPVPVTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318538_1005672313300031546SoilLASAVPVTVVRRIAYDASRPIRLTMYVYRADQVRLRHEMGSIPHGQ
Ga0318538_1007199813300031546SoilSTPVPVTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318573_1044496723300031564SoilAFFRLSSVVPVTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318573_1081806813300031564SoilVSRTTFDTDQPIRLTRYVYRADRLRLRHEMGSIPVR
Ga0318515_1006045913300031572SoilTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318555_1012855213300031640SoilPDATESAFFQLASPVPVTVVSRTTFDTAQPIRLTRYVYRADRLRLRHEMGSIPSSSPSRSSR
Ga0318555_1019231023300031640SoilDAIETAFFRLSSVVPVTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318555_1050907713300031640SoilETAFFRLSSVVPVTVVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318561_1003228813300031679SoilVVSRTTFDTDQPIRLTRYVYRADRLRLRHEMGSIPVR
Ga0318561_1052105813300031679SoilAFFRLSSVVPVTVVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAI
Ga0318572_1021217013300031681SoilFQLASPVPVTVVSRTTFDTAQPIRLTRYVYRADRLRLRHEMGSIPSSSPSRSSR
Ga0318560_1006631313300031682SoilFQLSSVVPVTVVSRTAYDAAQPVQLTRYVYRADRLRLRHEMGSIPTT
Ga0318496_1065935623300031713SoilSSVVPVTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318501_1042257413300031736SoilSRTVYDAARPIRLTMYVYRADQVRLRHEMGSIPRGN
Ga0306918_1011362143300031744SoilRRIAYDASRPIRLTMYVYRADQVRLRHEMGSIPHGQ
Ga0306918_1034623923300031744SoilVVSRTTYDNSQPVQLTRYVYRADRLRLRHEMGSIPAI
Ga0318502_1056198423300031747SoilTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318492_1015155213300031748SoilLSSVVPVTVVSRTTYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0318537_1030080723300031763SoilSSVVPVTVVSRTAYDAAQPVQLTRYVYRADRLRLRHEMGSIPTT
Ga0318554_1029391813300031765SoilLSSVVPVTVVSRTAYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0318554_1051324923300031765SoilFQLATRIPLTVVSRTVYDAARPVRLTMYVYRADQVRLRHEMGSIPRGN
Ga0318509_1053878423300031768SoilPVTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318526_1037150713300031769SoilTVVSRTAYDASRPIRLTMYVYRADQVRLRHEMGSIPQGK
Ga0318546_1047638823300031771SoilTAFFQLASPVPVTVVSRITFDTSQPIRLTRYVYRADRLRLRHEMGSIPLI
Ga0318546_1107614423300031771SoilVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318543_1007707313300031777SoilFQLASPVPVTVVSRTTFDTDQPIRLTRYVYRADRLRLRHEMGSIPVR
Ga0318543_1053359113300031777SoilTVVRRIAYDASRPIRLTMYVYRADQVRLRHEMGSIPHGQ
Ga0318566_1000176483300031779SoilRWRWRPPRLSTPVPVTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318566_1050400323300031779SoilTVVSRTAYDASRPIRLTLYVYCADQVRLRHEMGSIPHGK
Ga0318508_103314823300031780SoilVTVVSRTTFDTSRPIRLTGYVYRADRLRLRHEMGRIPLI
Ga0318576_1019693613300031796SoilPLTVVSRTAYDASRPIRLTMYVYRADQVRLRHEMGSIPQGK
Ga0318550_1015254033300031797SoilVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318568_1048911723300031819SoilFRLSSVVPVTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318567_1064023113300031821SoilSSVVPVTVVSRTAYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0318499_1040061423300031832SoilVVSRTVYDAARPIRLTRYVYRADQVRLRHEMGSIPPGN
Ga0318517_1015395633300031835SoilLSTPVPVTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318527_1017879913300031859SoilVPVTVVSRTAYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0306919_1010630813300031879SoilVVRRIAYDASRPIRLTMYVYRADQVRLRHEMGSIPHGQ
Ga0306919_1027323713300031879SoilTVVSRTVYDAARPIRLTMYVYRADHVRLRHEMGSIPRGN
Ga0306925_1099413313300031890SoilEAEFFQLATGIPLTVVSRTVYDAARPIRLTMYVYRADQVRLRHEMGSIPPGN
Ga0318551_1039264523300031896SoilAIETAFFRLSSVVPVTVVSRTTYDGSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318520_1009142223300031897SoilFQLASPVPVTVVSRTTFDTSRPIRLTGYVYRADRLRLRHEMGRIPLI
Ga0318520_1079235823300031897SoilTPVPVTVVSRTAYDTARPIRLTEYVYRADRIRLRHEKGSIPLL
Ga0318520_1081340823300031897SoilSVVPVTVVSRTTYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0318520_1087792123300031897SoilTVVSRTTYDASRPIRLTRYVYRADRLRLRHEMGSIPVR
Ga0306923_1043177713300031910SoilSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0306923_1217641823300031910SoilDAIETAFFGLSSAVPVTVVSRTAYDAAQPVQLTRYVFRADRLHLRHEMGSIPVP
Ga0310916_1042761223300031942SoilPDATETAFFQLASPVPVTVVSRTTFDTAQPIRLTRYVYRADRLRLRHEMGSIPSSSPSRSSR
Ga0306922_1175235313300032001SoilIETAFFRLSSVVPVTVVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0318562_1073359623300032008SoilLATGIPITVVSRTAYDAARPIRLTMYVYRADQVRLRHEMGSIPQGK
Ga0318569_1034691523300032010SoilFQLSTPVPVTVVSRTTYDASRPIRLTRYVYRADRLRLRHEMGSIPVR
Ga0310911_1070682823300032035SoilSSVVPVTVVSRTAYDAAQPVQLTRYVFRADRLHLRHEMGSIPVP
Ga0318545_1005542913300032042SoilFQLASAVPVTVVRRIAYDASRPIRLTMYVYRADQVRLRHEMGSIPHGQ
Ga0318558_1034989513300032044SoilYRVSRTAYDASRPIRLTLYVYCADQVRLRHEMGSIPHGK
Ga0318570_1054894523300032054SoilTVVSRTAYDAARPIRLTMYVYRADQVRLRHEMGSIPQGK
Ga0318504_1060741623300032063SoilQLSSVVPVTVVSRTAYDAAQPVQLTRYVYRADRLRLRHEMGSIPTT
Ga0318513_1062975213300032065SoilFQLATGIPLTVVSRTAYDAIRPIRLTMYVYRADQVRLRHEMGGLPQGK
Ga0306924_1202264113300032076SoilFQLATGIPLTVVSRTVYDAARPIRLTMYVYRADQVRLRHEMGGLPQGK
Ga0306924_1207820913300032076SoilIETAFFRLSSVVPVTVVSRTAYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0306924_1226561213300032076SoilTVVSRTTYDNSQPVQLTRYVYRADRLRLRHEMGSIPPT
Ga0318540_1052703313300032094SoilVVSRTAYDNSQPVQLTRYVYRADRLRLRHEMGSIPVT
Ga0306920_10116393713300032261SoilVPVTVVSRTTYDDSRPVQLTRYVYRADRLRLRHEMGSVPVT
Ga0306920_10182241113300032261SoilVSRTTYDDSQPVQLTRYVYRADRLRLRHEMGSIPAT
Ga0306920_10209139723300032261SoilVVSRTAYDAARPIRLTMYVYRADQVRLRHEMGSIPQGK
Ga0318519_1029509823300033290SoilLTVVSRTAYDASRPIRLTMYVYRADQVRLRHEMGSIPQGK


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