NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104434

Metagenome / Metatranscriptome Family F104434

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104434
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 59 residues
Representative Sequence MTSTVLIQNLKAKIVDLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQQEYA
Number of Associated Samples 68
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.89 %
% of genes near scaffold ends (potentially truncated) 20.00 %
% of genes from short scaffolds (< 2000 bps) 83.00 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction Yes
3D model pTM-score0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (59.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(28.000 % of family members)
Environment Ontology (ENVO) Unclassified
(78.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(71.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.17%    β-sheet: 0.00%    Coil/Unstructured: 44.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.79
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
f.1.4.0: automated matchesd5vx1a15vx10.69884
d.18.1.4: Guide RNA binding protein gBPd2giaa12gia0.68496
a.104.1.1: Cytochrome P450d1io7a_1io70.68481
a.4.5.11: Helicase DNA-binding domaind1fnna11fnn0.68417
a.118.13.1: Arp2/3 complex 16 kDa subunit ARPC5d1k8kg_1k8k0.68381


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF13186SPASM 1.00
PF10614CsgF 1.00
PF02617ClpS 1.00
PF13501SoxY 1.00
PF00149Metallophos 1.00
PF03851UvdE 1.00
PF00574CLP_protease 1.00
PF13353Fer4_12 1.00
PF13439Glyco_transf_4 1.00
PF13578Methyltransf_24 1.00
PF05656DUF805 1.00
PF01176eIF-1a 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0616Periplasmic serine protease, ClpP classPosttranslational modification, protein turnover, chaperones [O] 2.00
COG0740ATP-dependent protease ClpP, protease subunitPosttranslational modification, protein turnover, chaperones [O] 2.00
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 1.00
COG1030Membrane-bound serine protease NfeD, ClpP classPosttranslational modification, protein turnover, chaperones [O] 1.00
COG2127ATP-dependent Clp protease adapter protein ClpSPosttranslational modification, protein turnover, chaperones [O] 1.00
COG3152Uncharacterized membrane protein YhaH, DUF805 familyFunction unknown [S] 1.00
COG4294UV DNA damage repair endonucleaseReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A59.00 %
All OrganismsrootAll Organisms41.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002307|JGI24890J29729_1000023All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage158379Open in IMG/M
3300002408|B570J29032_109572090Not Available887Open in IMG/M
3300002408|B570J29032_109701526Not Available1086Open in IMG/M
3300002835|B570J40625_100638987All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300002835|B570J40625_101132997Not Available659Open in IMG/M
3300002835|B570J40625_101244776Not Available621Open in IMG/M
3300005581|Ga0049081_10083037Not Available1201Open in IMG/M
3300005582|Ga0049080_10167275All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage733Open in IMG/M
3300005582|Ga0049080_10181252Not Available700Open in IMG/M
3300005583|Ga0049085_10186762All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage691Open in IMG/M
3300005805|Ga0079957_1104779Not Available1532Open in IMG/M
3300008116|Ga0114350_1010908Not Available4068Open in IMG/M
3300009159|Ga0114978_10005798All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9846Open in IMG/M
3300009159|Ga0114978_10459698All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage753Open in IMG/M
3300009161|Ga0114966_10088686All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2101Open in IMG/M
3300009164|Ga0114975_10377830All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage775Open in IMG/M
3300009183|Ga0114974_10285974Not Available975Open in IMG/M
3300009183|Ga0114974_10477399Not Available702Open in IMG/M
3300009184|Ga0114976_10086592All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1801Open in IMG/M
3300009184|Ga0114976_10168551All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1219Open in IMG/M
3300010885|Ga0133913_10093881Not Available8040Open in IMG/M
3300012779|Ga0138284_1076000All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes756Open in IMG/M
3300012779|Ga0138284_1218906Not Available531Open in IMG/M
3300012779|Ga0138284_1399767All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage771Open in IMG/M
3300013004|Ga0164293_10194254Not Available1471Open in IMG/M
3300013004|Ga0164293_10501783All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales801Open in IMG/M
3300013004|Ga0164293_10627398Not Available696Open in IMG/M
3300013004|Ga0164293_10708772Not Available644Open in IMG/M
3300013004|Ga0164293_10746577Not Available624Open in IMG/M
3300013004|Ga0164293_10989557Not Available526Open in IMG/M
3300013005|Ga0164292_10479749Not Available818Open in IMG/M
3300013093|Ga0164296_1031961Not Available2897Open in IMG/M
(restricted) 3300013126|Ga0172367_10249245All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1080Open in IMG/M
3300013372|Ga0177922_11249314All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage867Open in IMG/M
3300017722|Ga0181347_1024112All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1913Open in IMG/M
3300017723|Ga0181362_1079452All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes662Open in IMG/M
3300017761|Ga0181356_1081864Not Available1071Open in IMG/M
3300017778|Ga0181349_1050557Not Available1632Open in IMG/M
3300020141|Ga0211732_1588066Not Available817Open in IMG/M
3300020151|Ga0211736_10234200All Organisms → Viruses → Predicted Viral1980Open in IMG/M
3300020159|Ga0211734_10389228All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1014Open in IMG/M
3300020159|Ga0211734_11008068Not Available517Open in IMG/M
3300020159|Ga0211734_11113471Not Available941Open in IMG/M
3300020160|Ga0211733_10465247Not Available618Open in IMG/M
3300020161|Ga0211726_10029911Not Available707Open in IMG/M
3300020161|Ga0211726_10352095Not Available1129Open in IMG/M
3300020161|Ga0211726_10474928Not Available512Open in IMG/M
3300020162|Ga0211735_10384195Not Available574Open in IMG/M
3300020179|Ga0194134_10114532All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1289Open in IMG/M
3300020183|Ga0194115_10032367All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3654Open in IMG/M
3300020183|Ga0194115_10225657All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage904Open in IMG/M
3300020205|Ga0211731_10036702Not Available1386Open in IMG/M
3300020205|Ga0211731_10946722Not Available718Open in IMG/M
3300021961|Ga0222714_10598577Not Available551Open in IMG/M
3300021962|Ga0222713_10061007Not Available2833Open in IMG/M
3300021962|Ga0222713_10085726All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2290Open in IMG/M
3300021963|Ga0222712_10428876Not Available797Open in IMG/M
3300023174|Ga0214921_10372922Not Available746Open in IMG/M
3300023179|Ga0214923_10117265All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1747Open in IMG/M
3300023179|Ga0214923_10486186Not Available610Open in IMG/M
3300023184|Ga0214919_10003704All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes22867Open in IMG/M
3300024346|Ga0244775_10259541All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1447Open in IMG/M
3300025389|Ga0208257_1031150All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage788Open in IMG/M
3300027608|Ga0208974_1046067Not Available1266Open in IMG/M
3300027608|Ga0208974_1069275Not Available981Open in IMG/M
3300027608|Ga0208974_1148217Not Available597Open in IMG/M
3300027608|Ga0208974_1158564Not Available569Open in IMG/M
3300027608|Ga0208974_1183595Not Available514Open in IMG/M
3300027688|Ga0209553_1205106All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes639Open in IMG/M
3300027744|Ga0209355_1264087All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage670Open in IMG/M
3300027754|Ga0209596_1019832All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4056Open in IMG/M
3300027772|Ga0209768_10257809All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage752Open in IMG/M
3300027782|Ga0209500_10001853All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes15514Open in IMG/M
3300027973|Ga0209298_10294473Not Available635Open in IMG/M
3300028394|Ga0304730_1149889Not Available938Open in IMG/M
3300031519|Ga0307488_10587172Not Available649Open in IMG/M
3300031857|Ga0315909_10655932Not Available689Open in IMG/M
3300031857|Ga0315909_10660923Not Available686Open in IMG/M
3300031857|Ga0315909_10676705All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage674Open in IMG/M
3300031857|Ga0315909_10800064All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage596Open in IMG/M
3300032050|Ga0315906_11287191Not Available523Open in IMG/M
3300032116|Ga0315903_10065676All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3606Open in IMG/M
3300032173|Ga0315268_12416450All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage539Open in IMG/M
3300032605|Ga0316232_1212277Not Available771Open in IMG/M
3300034018|Ga0334985_0479078All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon723Open in IMG/M
3300034019|Ga0334998_0769674Not Available506Open in IMG/M
3300034022|Ga0335005_0519992Not Available659Open in IMG/M
3300034061|Ga0334987_0059590All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3109Open in IMG/M
3300034071|Ga0335028_0063210All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2481Open in IMG/M
3300034071|Ga0335028_0116286All Organisms → Viruses → Predicted Viral1736Open in IMG/M
3300034071|Ga0335028_0529905Not Available646Open in IMG/M
3300034082|Ga0335020_0123697Not Available1311Open in IMG/M
3300034101|Ga0335027_0744107Not Available576Open in IMG/M
3300034104|Ga0335031_0324029Not Available994Open in IMG/M
3300034104|Ga0335031_0386522Not Available884Open in IMG/M
3300034110|Ga0335055_0009302All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4612Open in IMG/M
3300034111|Ga0335063_0479903Not Available610Open in IMG/M
3300034166|Ga0335016_0640157Not Available574Open in IMG/M
3300034200|Ga0335065_0370112Not Available887Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater28.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake16.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater13.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic9.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake7.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater6.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater3.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake3.00%
LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic1.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater1.00%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.00%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.00%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton1.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001850Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2aEnvironmentalOpen in IMG/M
3300002307Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012779Freshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013093Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025389Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027688Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028394Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032605Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034110Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034166Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM37_113279233300001850Marine PlanktonMTSNVLIANLKAKISELSQDDLEREFELYKSLRARSVRDEIYQELLAQELDHREQLEVWS
JGI24890J29729_10000231643300002307LenticMALDFLRKNLQFQIEQLSQDDLEVRFELYKDLKSRSVRDEIYLELMAQELDKREQLVGAE
B570J29032_10957209013300002408FreshwaterMTSTVLIQNLKAKIADLPQDELEDEFDLYKSLQARSVRDEIYQELLAQELDQREQQEYA*
B570J29032_10970152623300002408FreshwaterMALEFLIKNLKFKISQLLQDDLEQEFELYKSLQARSVRDEIYQELLAQELDSREQQEYDYE*
B570J40625_10063898723300002835FreshwaterMALEYLTKNLKFQIAQLSQDDLEEEFELYKSLQARSVRDEIYQELLAQELDRREQQ
B570J40625_10113299733300002835FreshwaterMTSTVLIQNLKAKIADLPQDELEDEFDLYKSLQARSVRDEIYQELLAQELDKREQEEYA*
B570J40625_10124477633300002835FreshwaterMALEHLTKNLKFKIEQLSQDDLEEEFELYKSLQARGVRDEIYQELLAQELDRREQEEYV*
Ga0049081_1008303733300005581Freshwater LenticMSNVLIQNLKFTIGQLSQDELEDEFELYKSLQARSVRDEIYQELIAQELDRREQEEYT*
Ga0049080_1016727533300005582Freshwater LenticMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQQENA
Ga0049080_1018125223300005582Freshwater LenticMTSNVLIQNLKDKITELSQDDLEQEFELYKSLQARSVRDEIYQELLAQELDRREQQEYA*
Ga0049085_1018676213300005583Freshwater LenticMTSQTLISNLRYQIQQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDRREQQQENV
Ga0079957_110477913300005805LakeMEYLIKNLKFKIEQLSQDDLEEEFKLYKSLQARSVRDEIYQELLAQELDRREAEEVCS*
Ga0114350_101090863300008116Freshwater, PlanktonMTQVLIANLKFNISQLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREHEEVA*
Ga0114978_1000579833300009159Freshwater LakeMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQELDKREQEEYS*
Ga0114978_1045969833300009159Freshwater LakeMTSNVLIQNLKAKIVELSQDDLEQEFDLYKSLQARSVRDEIYQELLAQELDRREHEQEWA
Ga0114966_1008868613300009161Freshwater LakeMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQQENIC*
Ga0114975_1037783013300009164Freshwater LakeMTSQILISNLRYQIQQLSQDELELEFETYRTLQARSVRDEIYQELLAQALDQR
Ga0114974_1028597423300009183Freshwater LakeLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQELDKREQEEYS*
Ga0114974_1047739933300009183Freshwater LakeMALEHLTKNLKFKIEQLSQDDLEEEFELYKSLMARSVRDEIYQELLAQELDRREQQEYA*
Ga0114976_1008659223300009184Freshwater LakeMTSQILISNLRYQIQQLSQDELELEFETYRTLQARSVRDEIYQELLAQELDKREQEEYS*
Ga0114976_1016855113300009184Freshwater LakeMSFEYLIKNLKFKIEQLSQDELEEEFELYKGLVSRSVRDEIYQELLAQELDQREQQEY
Ga0133913_1009388113300010885Freshwater LakeMTSQTLISNLRYQIQQLSQDELELEFDTYRKLQARSVRDEIYQELLAQTLDQREQQEDL*
Ga0138284_107600023300012779Freshwater LakeMALEILKKNLQFQIEQLSQDELEDQFELYKSLQARGVRDEIYQELLAQELDKREQKEYA*
Ga0138284_121890623300012779Freshwater LakeMTSQTLISNLRYQIEQLSQDELEDQFELYKSLQARSVRDEIYQELLAQELDRREQEEYA*
Ga0138284_139976733300012779Freshwater LakeMTSQILISNLRYQIQQLSQDELELEFETYRTLQARSVRDEIYQELLAQALDQREQQE
Ga0164293_1019425453300013004FreshwaterMALEHLTKNLKFKIEQLSQDQLEEEFELYKSLQARGVRDEIYQELLAQELDRREQLEEYA
Ga0164293_1050178343300013004FreshwaterMLHINNKERLKMPLEHLTKNLKFQIEQLSQDQLEEEFELYKSLQARGVRDEIYQELLAQELDRREQEYA*
Ga0164293_1062739823300013004FreshwaterMALEFLTKNLKFKISQLSQDDLEQEFELYKSLQARSVRDEIYQELLAQELDHREQQEYEYE*
Ga0164293_1070877223300013004FreshwaterMPLEHLTKNLKFQIEQLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQQEYA*
Ga0164293_1074657733300013004FreshwaterIKEKTMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQELDKREQEEYS*
Ga0164293_1098955713300013004FreshwaterLTSQTLISNLRHQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQELDKREQKEYA*
Ga0164292_1047974923300013005FreshwaterMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQEENA*
Ga0164296_103196183300013093FreshwaterMSSNTLIANLKAQIADLSQDELEDRYELYKNLNARSVRDEIYQELLAQELDNREYNYAN*
(restricted) Ga0172367_1024924523300013126FreshwaterMTQVLIANLKFTISQLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRRESEELE*
Ga0177922_1124931433300013372FreshwaterMTSQTLISNLRYQIEQLSQDELESEFDTYRTLQARSVRDEIYQELLAQALDQREQQENV*
Ga0181347_102411223300017722Freshwater LakeMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSIRDEIYQELLAQALDQREQQQENI
Ga0181362_107945213300017723Freshwater LakeMTSQTLISNLRYQIQQLSQDELELEFETYRTLQARSVRDEIYQELLAQTLDQR
Ga0181356_108186443300017761Freshwater LakeMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQQENI
Ga0181349_105055743300017778Freshwater LakeMTSQTLISNLRYQIEQLSQDELESEFDTYRTLQARSVRDEIYQELLAQALD
Ga0211732_158806613300020141FreshwaterMALEILKKNLQFQIEQLSQDELEDQFELYKSLQARGVRDEIYQELLAQELDKREQKEYA
Ga0211736_1023420033300020151FreshwaterMSNVLIENLKFKISQLPQDELEDDFELYKSLQARSVRDEIYQELLAQELDQREQQENIC
Ga0211734_1038922813300020159FreshwaterMTSTVLIQNLKAKIADLPQDELEDEFDLYKSLQARSVRDEIYQELLAQELDQREQQEYA
Ga0211734_1100806823300020159FreshwaterMTATVLIQNLKAKIVDLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREHEQECA
Ga0211734_1111347123300020159FreshwaterMSNVLIENLKFKISQLPQDELEDEFELYKSLQARSVRDEIYQEILAQELDRREQEEYS
Ga0211733_1046524733300020160FreshwaterMALEILKKNLQFQIEQLSQDELEDQFELYKSLQARGVRDEIYQELLAQELDKREQEEYV
Ga0211726_1002991123300020161FreshwaterMTSTVLIENLKAKIADLPQDDLEDEFELYKSLQARSVRDEIYQELLAQELDRREHEQEYA
Ga0211726_1035209533300020161FreshwaterMPLEHLTKNLKFQIEQLSQDQLEEEFDLYKSLQARGVRDEIYQELLAQELDRREHEQE
Ga0211726_1047492823300020161FreshwaterMALVILKKNLQFQIEQLSQDELEDQFELYKSLQARGVRDEIYQELLAQELDKREQKEYA
Ga0211735_1038419523300020162FreshwaterMTSTVLIQNLRAKIADLPQDDLEEEFELYKSLMARSVRDEIYQELLAQELDRREQQEYA
Ga0194134_1011453213300020179Freshwater LakeMTQVLIANLKFNISQLSQDQLEDEFELYKNLQARSVRDEIYQELLAQELDRREHEELA
Ga0194115_1003236753300020183Freshwater LakeLEQTLSTYQGVNMTQVLIANLKFNISQLSQDQLEDEFELYKNLQARSVRDEIYQELLAQELDRREHEELA
Ga0194115_1022565733300020183Freshwater LakeMTQVLIANLKFNISQLSQDQLEDEFELYKNLQARSVRDEIYQELLAQELDRRESEELA
Ga0211731_1003670243300020205FreshwaterMPLEHLTKNLKFQIEQLSQDQLEEEFDLYKSLQARGVRDEIYQELLAQELDRREHEQEYA
Ga0211731_1094672223300020205FreshwaterMSNVLIQNLKFTISQLSQDELEDEFELYKSLQARSVRDEIYQEILAQELDRREQEEYS
Ga0222714_1059857713300021961Estuarine WaterNVLIENLKFKISQLPQDELEDEFELYKSLQARSVRDEIYQELVAQELDRREQEEYS
Ga0222713_1006100733300021962Estuarine WaterMEYLIKNLKFKIEQLSQDDLEQEFELYKNLQARGVRDEIYQELLAQELDRREAEEVCS
Ga0222713_1008572633300021962Estuarine WaterMSNVLIENLKFKISQLPQDELEDEFELYKSLQARSVRDEIYQELVAQELDRREQEEYS
Ga0222712_1042887633300021963Estuarine WaterMEYLIKNLKFKIEQLSQDDLEQEFELYKNLQARGVRDEIYQELLAQELDRREHEQECA
Ga0214921_1037292233300023174FreshwaterMTSQTLISNLRHQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQQENI
Ga0214923_1011726513300023179FreshwaterMTSQTLISNLRYQIQQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQENM
Ga0214923_1048618623300023179FreshwaterMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQQENV
Ga0214919_1000370453300023184FreshwaterMALEYLTKNLRFKIEQLSQDELEEEFELYKSLIARSVRDEIYQELLAQELDRREQEELA
Ga0244775_1025954133300024346EstuarineMTSQTLISNLRYQIQQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQENI
Ga0208257_103115023300025389FreshwaterMALEILTKNLKFKIEQLSQDELEDQFELYKSLASKSVRDEIYTELLAQELDKRDEQEYA
Ga0208974_104606743300027608Freshwater LenticMPLEHLTKNLKFQIEQLSQDQLEDEFELYKSLQARSVRDEIYQELLAQELDRREHEQEWA
Ga0208974_106927513300027608Freshwater LenticMSNVLIQNLKFTIGQLSQDELEDEFELYKSLQARSVRDEIYQELIAQELDRREQEEYT
Ga0208974_114821713300027608Freshwater LenticMSNVLIENLKFKISQLPQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQEEYS
Ga0208974_115856413300027608Freshwater LenticMTSTVLIENLKAKIVDLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREHEQEW
Ga0208974_118359523300027608Freshwater LenticMTSNVLIQNLKDKITELSQDDLEQEFELYKSLQARSVRDEIYQELLAQELDRREQQEYA
Ga0209553_120510623300027688Freshwater LakeMTSQTLISNLRYQIEQLSQDELESEFDTYRTLQARSVRDEIYQELLAQALDQREQQENA
Ga0209355_126408713300027744Freshwater LakeMSNVLIQNLKFTIGQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDRREQQQENV
Ga0209596_101983233300027754Freshwater LakeMTSNVLIQNLKAKIVDLSQDDLEQEFDLYKSLQARSVRDEIYQELLAQELDRREYEQEWA
Ga0209768_1025780933300027772Freshwater LakeMTSQTLISNLRYQIQQLSQDELELEFDTYRTLQARSIRDEIYQELLAQA
Ga0209500_10001853173300027782Freshwater LakeMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQELDKREQEEYS
Ga0209298_1029447323300027973Freshwater LakeTMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQEHEYE
Ga0304730_114988923300028394Freshwater LakeMTSNVLIQNLKAKIVDLSQDDLEQEFNLYKSLQARSVRDEIYQELLAQELDRREHEQEWA
Ga0307488_1058717223300031519Sackhole BrineMALEILKKNLQFQIEQLSQDELEEKFELYKSLASKGVRDEIYTELMAQELDKREQAEYV
Ga0315909_1065593213300031857FreshwaterMTQVLIANLKFNISQLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREHEEVA
Ga0315909_1066092343300031857FreshwaterNLKAKIADLPQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQFEEWA
Ga0315909_1067670523300031857FreshwaterMTQVLIANLKFNISQLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQEEVA
Ga0315909_1080006423300031857FreshwaterMTQVLIANLKFNISQLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQEELA
Ga0315906_1128719133300032050FreshwaterMTSNVLIANLKAKISDLSQDDLEQEFELYKNLQARSVRDEIYQELLAQELDRREQLEEWA
Ga0315903_1006567613300032116FreshwaterMTSNVLIQNLKAKIADLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDKREQEQ
Ga0315268_1241645013300032173SedimentMTSQTLISNLRYQIEQLSQDELELEFDTYRTLQARSVRDEIYQELLAQALDQREQQQEN
Ga0316232_121227743300032605FreshwaterMSSNTLIANLKAQISDLSQDELEDRYELYKNLNARSVRDEIYQELLAQELDNREYNYAN
Ga0334985_0479078_521_7063300034018FreshwaterMALEFLTKNLKFKISQLSQDGLEEEFELYKSLQARSVRDEIYQELLAQELDKREQQEYDY
Ga0334998_0769674_318_4943300034019FreshwaterMSNVLIENLKFKISHLPQDELEDEFELYKSLQARSVRDEIYQELLAQELDHREQEEYS
Ga0335005_0519992_45_2273300034022FreshwaterMTSTVLIQNLKAKIVDLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDKREHEQEWA
Ga0334987_0059590_1613_17923300034061FreshwaterMTSQTLISNLRYQIEQLSQDELESEFDTYRTLQARSVRDEIYQELLAQELDKREQEEYS
Ga0335028_0063210_157_3363300034071FreshwaterMALEFLIKNLKFKISQLLQDDLEQEFELYKSLQARSVRDEIYQELLAQELDHREQEEYS
Ga0335028_0116286_1548_17303300034071FreshwaterMPLEHLTKNLKFQIEQLSQDQLEDEFELYKSLQARSVRDEIYQELLAQELDRREHEQEYA
Ga0335028_0529905_1_1713300034071FreshwaterVLIQNLKAKIVDLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREHKQEYA
Ga0335020_0123697_1036_12453300034082FreshwaterMLHINNKERLKMPLEHLTKNLKFQIEQLSQDQLEEEFELYKSLQARGVRDEIYQELLAQELDRREQEYA
Ga0335027_0744107_252_4313300034101FreshwaterMTSTVLIQNLKAKIADLPQDELEDEFDLYKSLQARSVRDEIYQELLAQELDRREQQEYA
Ga0335031_0324029_140_3193300034104FreshwaterMTSTVLIQNLKAKIVDLSQDELEDEFELYKSLQARSVRDEIYQELLAQELDRREQQEYA
Ga0335031_0386522_3_1673300034104FreshwaterMPLEHLTKNLKFQIEQLSQDQLEEEFELYKSLQARSVRDEIYQELLAQELDRREH
Ga0335055_0009302_830_10093300034110FreshwaterMTSTVLIQNLKAKIADLPQDELEDEFDLYKSLQARSVRDEIYQELLAQELDKREQEEYA
Ga0335063_0479903_466_6093300034111FreshwaterMTSQTLISNLIYQIEQLSQDELELEFDSYRTLQARSVRDEIYQELLAQ
Ga0335016_0640157_8_1843300034166FreshwaterMSNVLIQNLKFTISQLSQDELEDEFELYKSLQARSVRDEIYQEILAQELDKREQEEYS
Ga0335065_0370112_28_2133300034200FreshwaterMALEFLIKNLKFKISQLLQDDLEQEFELYKSLQARSVRDEIYQELLAQELDSREQQEYDY


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