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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F104355 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 100 |
| Average Sequence Length | 52 residues |
| Representative Sequence | MDDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGTDHAARRGW |
| Number of Associated Samples | 79 |
| Number of Associated Scaffolds | 100 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 25.00 % |
| % of genes near scaffold ends (potentially truncated) | 10.00 % |
| % of genes from short scaffolds (< 2000 bps) | 10.00 % |
| Associated GOLD sequencing projects | 76 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.47 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (89.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.33% β-sheet: 0.00% Coil/Unstructured: 42.67% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 100 Family Scaffolds |
|---|---|---|
| PF02720 | DUF222 | 23.00 |
| PF00239 | Resolvase | 2.00 |
| PF04237 | YjbR | 1.00 |
| PF13185 | GAF_2 | 1.00 |
| PF00723 | Glyco_hydro_15 | 1.00 |
| PF04185 | Phosphoesterase | 1.00 |
| PF01266 | DAO | 1.00 |
| PF12006 | DUF3500 | 1.00 |
| PF00441 | Acyl-CoA_dh_1 | 1.00 |
| PF08241 | Methyltransf_11 | 1.00 |
| PF01709 | Transcrip_reg | 1.00 |
| PF13230 | GATase_4 | 1.00 |
| PF13424 | TPR_12 | 1.00 |
| PF00480 | ROK | 1.00 |
| PF13751 | DDE_Tnp_1_6 | 1.00 |
| PF13631 | Cytochrom_B_N_2 | 1.00 |
| PF07731 | Cu-oxidase_2 | 1.00 |
| PF00652 | Ricin_B_lectin | 1.00 |
| PF02661 | Fic | 1.00 |
| PF05762 | VWA_CoxE | 1.00 |
| PF00392 | GntR | 1.00 |
| PF00011 | HSP20 | 1.00 |
| PF01636 | APH | 1.00 |
| PF00903 | Glyoxalase | 1.00 |
| PF04075 | F420H2_quin_red | 1.00 |
| PF08751 | TrwC | 1.00 |
| PF14492 | EFG_III | 1.00 |
| PF00196 | GerE | 1.00 |
| PF13561 | adh_short_C2 | 1.00 |
| PF13408 | Zn_ribbon_recom | 1.00 |
| COG ID | Name | Functional Category | % Frequency in 100 Family Scaffolds |
|---|---|---|---|
| COG1940 | Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain | Transcription [K] | 2.00 |
| COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 2.00 |
| COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 2.00 |
| COG0071 | Small heat shock protein IbpA, HSP20 family | Posttranslational modification, protein turnover, chaperones [O] | 1.00 |
| COG0217 | Transcriptional and/or translational regulatory protein YebC/TACO1 | Translation, ribosomal structure and biogenesis [J] | 1.00 |
| COG1960 | Acyl-CoA dehydrogenase related to the alkylation response protein AidB | Lipid transport and metabolism [I] | 1.00 |
| COG2132 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) | Cell cycle control, cell division, chromosome partitioning [D] | 1.00 |
| COG2315 | Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family | Transcription [K] | 1.00 |
| COG3387 | Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family | Carbohydrate transport and metabolism [G] | 1.00 |
| COG3511 | Phospholipase C | Cell wall/membrane/envelope biogenesis [M] | 1.00 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 89.00 % |
| All Organisms | root | All Organisms | 11.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005546|Ga0070696_101316537 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 614 | Open in IMG/M |
| 3300012211|Ga0137377_10127256 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2432 | Open in IMG/M |
| 3300014154|Ga0134075_10532874 | Not Available | 528 | Open in IMG/M |
| 3300017822|Ga0187802_10412394 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 535 | Open in IMG/M |
| 3300017975|Ga0187782_10313072 | All Organisms → cellular organisms → Bacteria | 1185 | Open in IMG/M |
| 3300018089|Ga0187774_10878150 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 614 | Open in IMG/M |
| 3300024347|Ga0179591_1165269 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales | 3511 | Open in IMG/M |
| 3300025929|Ga0207664_11689451 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 555 | Open in IMG/M |
| 3300027662|Ga0208565_1208986 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 553 | Open in IMG/M |
| 3300027698|Ga0209446_1196340 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 519 | Open in IMG/M |
| 3300032160|Ga0311301_12381601 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 598 | Open in IMG/M |
| 3300032770|Ga0335085_12299064 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea | 539 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 16.00% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 14.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.00% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 11.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 7.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 6.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 4.00% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 3.00% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 2.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.00% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.00% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.00% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 2.00% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 1.00% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.00% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.00% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.00% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.00% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.00% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.00% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
| 3300009698 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012350 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012882 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300014154 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015 | Environmental | Open in IMG/M |
| 3300014492 | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017926 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 | Environmental | Open in IMG/M |
| 3300017928 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300017937 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300017994 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2 | Environmental | Open in IMG/M |
| 3300018012 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5 | Environmental | Open in IMG/M |
| 3300018062 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300018088 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG | Environmental | Open in IMG/M |
| 3300018089 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300024288 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal | Environmental | Open in IMG/M |
| 3300024347 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027662 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027698 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027703 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes) | Environmental | Open in IMG/M |
| 3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027854 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) | Environmental | Open in IMG/M |
| 3300028780 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300028872 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204 | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300030058 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031764 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031859 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300032041 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 | Environmental | Open in IMG/M |
| 3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032892 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0066388_1043899781 | 3300005332 | Tropical Forest Soil | MDDTRADGAQAPLRAGVYGRLSETYDAAESVPTQLDRGAGHARRRGWAVVATFKDDGYSAFKE |
| Ga0070686_1019080932 | 3300005544 | Switchgrass Rhizosphere | VILRHACLMDDTRADRALAPLRAGVYGRLSETYDAAESVPTQLERGGSRQAARVDRGGHLQR* |
| Ga0070696_1013165372 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | VNDTQADRAEAQLRAGVYARLSETYDAAESVPTQIDRGTDHATRRGWTVAATF |
| Ga0070762_109910932 | 3300005602 | Soil | MGNTHADRAQAQLRVGVHARLSETYDAAKSVTTQVDRGTAHAQRRGWAVAASF |
| Ga0105245_109717821 | 3300009098 | Miscanthus Rhizosphere | MRAAAVFLRHDGFMRDIQADRAEAQLRAGVYARLSETYDAAESVPTQIDRGTDHATRRGWAVTATFKDDGFS |
| Ga0066709_1027943811 | 3300009137 | Grasslands Soil | MRDIQADRAEAQLRAGVYARLSETYDAAESVPTQLERGTDHARRRGWAVTATFKD |
| Ga0105238_130468591 | 3300009551 | Corn Rhizosphere | MDDRQADRAQAPLRAGVYGRLSETYDAAESVPTQLDRGAGHARRRG |
| Ga0116215_13574452 | 3300009672 | Peatlands Soil | MDSTQADRAEAQLRAGVYARLSETYDAAESVPTQIERGTDHA |
| Ga0116216_102655651 | 3300009698 | Peatlands Soil | MNSAQTDRAEAQLRAGVYARLSETYDAAESVPTQI |
| Ga0116223_106432801 | 3300009839 | Peatlands Soil | MDDTRADRAEAQLRAGVYARLSETYDAAESVPTQLERGTDHAARRGWTVAAT |
| Ga0136449_1034699501 | 3300010379 | Peatlands Soil | MNSAQTDRAEAQLRAGVYARLSETYDAAESVPTQIERGTDHAQRRGWIVAATFKDD |
| Ga0137393_100594964 | 3300011271 | Vadose Zone Soil | MSDTQADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGTDHAARRGWTVVATFKDDGYSAFKEITRD |
| Ga0137393_105146892 | 3300011271 | Vadose Zone Soil | MDDGQELLAEAKLRAGVYGRLSETYDAAESVPTQLERG |
| Ga0137383_104030943 | 3300012199 | Vadose Zone Soil | MGDIQADRAEAQLRAGVYARLSETYDAAESVPTQIERGAGHARRRGWIVAATF |
| Ga0137383_105536102 | 3300012199 | Vadose Zone Soil | MNDTQAARAEAQLRAGVYARLSETYDAAESVPTQLDRGAGHARR |
| Ga0137381_114855702 | 3300012207 | Vadose Zone Soil | MNDTQADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGTDHARRRGWTVVATFKDDGYSAFKEITRDGF |
| Ga0137381_116962632 | 3300012207 | Vadose Zone Soil | MDDTRADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGTDHARRRGWTVVATFKDDGYSAFK |
| Ga0137377_101272561 | 3300012211 | Vadose Zone Soil | MGDIQADRAEAQLRAGVYARLSETYDAAESVPTQIERGAGHAR |
| Ga0137372_101116793 | 3300012350 | Vadose Zone Soil | MNDIQADRAQAQLRAGVYARLSETYDAAESVPTQIERGAGHARRRGWIVAATFKDD |
| Ga0137372_102800942 | 3300012350 | Vadose Zone Soil | MGDIQADQAEAQLRAGVYARLSETYDAAESVPTQIERGAGHARRRGWIVAATFKDD |
| Ga0137384_111307192 | 3300012357 | Vadose Zone Soil | MNDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGAGHARRRGWTVVATFKD |
| Ga0137385_101073721 | 3300012359 | Vadose Zone Soil | MDDTQADRAQARLRAGLYGRLSETYDAAESVPTQLDRGAGHARRRG |
| Ga0137390_105533032 | 3300012363 | Vadose Zone Soil | MDDGQELLAKAKLRAGVYGRLSETYDAAESVPTQLERGTGHATRRGWQVVATFKDDGYS |
| Ga0157304_10550892 | 3300012882 | Soil | MDDTQADRAEAQLRAGVYARLSETYDAAESVPTQIDR |
| Ga0137407_105986091 | 3300012930 | Vadose Zone Soil | MDANQEDQAKAQLRAGVYGRLSETYDAAESVPTQIERGADHAGRRGWT |
| Ga0164303_104824581 | 3300012957 | Soil | MGNTRPDPAEAQFSAAVYARLSETYAAAESVPTLLDRGTDHADRRGWTVVATFKDD |
| Ga0134087_107987302 | 3300012977 | Grasslands Soil | MDDTQADRAEAQLRAGVYARLSETYDAAESVPTQIERGTDHATRRGWTVA |
| Ga0134075_105328741 | 3300014154 | Grasslands Soil | MNDTQADRAQAQLRAGVYGRLSETDDAAESVPTQL |
| Ga0182013_106503722 | 3300014492 | Bog | MDPTHEDTLKDQLRAGVYARLSETYDAAESVPTQLAKGTAHAERRGWRVAATFKD |
| Ga0187802_102774251 | 3300017822 | Freshwater Sediment | MHDTQADRAQAQLRAGVYGRLSETYDAAESVPTQIDRGTDHARRRGWTVVATFK |
| Ga0187802_104123942 | 3300017822 | Freshwater Sediment | MSSTPADQAEAQLRAGVYARLSETYDAAESVPIQLERGSEHA |
| Ga0187807_10260943 | 3300017926 | Freshwater Sediment | MHDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGTDHARRRGWTVVATFKDDGYSAFKE |
| Ga0187807_12597961 | 3300017926 | Freshwater Sediment | MDDTQEDRAQAPLRAGVYGRLSETYDAAESVPTQLDRGADHARRRGW |
| Ga0187806_10718551 | 3300017928 | Freshwater Sediment | MSTTQTDRAKALLRPGVYARLSETYDAAESVPTQLERGTEHATRRDWHVVATFKDDGYSA |
| Ga0187814_101661551 | 3300017932 | Freshwater Sediment | MDVTPQDDAGTQLRAAVYARLSETYDAAESVPTQLSNAERHAGRRGWRVVARFKDDG |
| Ga0187809_101096342 | 3300017937 | Freshwater Sediment | MDDRRADRAQARLRAGVYGRLSETYDAAESVPTQLDRGAAHAARRGWAVVATFKDDGFSAFKEV |
| Ga0187808_100538633 | 3300017942 | Freshwater Sediment | MNDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGA |
| Ga0187819_103505462 | 3300017943 | Freshwater Sediment | MDDNQADRAQAQLRAGVYGRLSETYDAAESVPTQIDRGADHARRR |
| Ga0187819_107253901 | 3300017943 | Freshwater Sediment | MDDTQEDRAQAQLRAGVYGRLSETYDAAESVPTQIDRGADHARRR |
| Ga0187817_100659271 | 3300017955 | Freshwater Sediment | MDETRADRAKAQLRAGVYGRLSETYDAAESVPTQLDRGTDHARRRGWTVVATFKDDGY |
| Ga0187817_107885862 | 3300017955 | Freshwater Sediment | MDDTQEDRAQAPLRAGVYGRLSETYDAAESVPTQLDRGTGHAARRGWTVVATFKDDGYSAFKEVTRDGF |
| Ga0187782_103130723 | 3300017975 | Tropical Peatland | MGGMDGTHEGRTEPQLRAASYARLSETYDEAESVPTQLA |
| Ga0187782_116347452 | 3300017975 | Tropical Peatland | VTKSHDGDYTQLDRAQAQLRAGVYARLSETYDAAESVPTQIERGTDHARRRG |
| Ga0187822_103534022 | 3300017994 | Freshwater Sediment | MDDIQTDRAETQLKAGVYARLSETYDAAESVPIQLERGTEHAARRGWTVAATF |
| Ga0187810_101787162 | 3300018012 | Freshwater Sediment | MDDTQADRAQAQLRTGVYARLSETYDAAESVPTQLERGTDHAQRRSWQVAAIY |
| Ga0187784_105948382 | 3300018062 | Tropical Peatland | MDDTQADRAQAPLRAGVYGRLSETYDAAESVPTQLDRGAGHAARRGWTVVATFKDD |
| Ga0187769_101008001 | 3300018086 | Tropical Peatland | MDDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGAD |
| Ga0187771_117390542 | 3300018088 | Tropical Peatland | MNDMQEDRAQAQLRAGVYGRLSETYDAAESVPTQLDRGADHA |
| Ga0187774_108781501 | 3300018089 | Tropical Peatland | MDHRQVLLAKARLRAGVYARLSETYDDAESVPTQLERGTEHGRRR |
| Ga0206354_109863301 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | TQADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGTGHAARRGWTVVAKVLDALAAPAGA |
| Ga0179592_102733532 | 3300020199 | Vadose Zone Soil | MDDMQADRAEAQLRAGLYGRLSETYDAAESVPTQLDRGTGHAARRGWTVVATFKDDGYSA |
| Ga0210403_111189072 | 3300020580 | Soil | MDDRQADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGAGH |
| Ga0210401_101634521 | 3300020583 | Soil | MDASHQDTTKPRLRAATYARLSETYDAAESVPTQP |
| Ga0179589_103098161 | 3300024288 | Vadose Zone Soil | MDDTRADRAQARLRAGLYGRLSETYDAAESVPTQLDRGTDHAARRGWTVVATFKDDGYSAFK |
| Ga0179591_11652693 | 3300024347 | Vadose Zone Soil | MDDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGAGHARRRGWAVVATFRMTGTPRLRK |
| Ga0207684_113568622 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MDDTQADRAEAQLRAGVYARLSETYDAAESVPTQIDRGTDHATRR |
| Ga0207693_112833851 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MDDIQADRAQAPLRAGLYGRLSETYDAAESVPTQLDRGAGH |
| Ga0207700_110428001 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MDVTPQDGAGTQLRAAVYARLSETYDAAESVPTQLASAE |
| Ga0207664_109957681 | 3300025929 | Agricultural Soil | MRDIQADRAEAQLRAGVYARLSETYDAAESVPTQLDRGTDHAKRRGWAVTA |
| Ga0207664_114254811 | 3300025929 | Agricultural Soil | MDDIQPDRAQALLRAGVYGRLSETYDAAESVPTQLDRGAGHAARRG |
| Ga0207664_116894512 | 3300025929 | Agricultural Soil | MDDRQADRAEAQLRAGVYARLSETYDAAESVPTQIDRGTDHATRRG |
| Ga0207676_112265271 | 3300026095 | Switchgrass Rhizosphere | MDDRQADRAQAPLRAGVYGRLSETYDAAESVPTQLDRGAGHARRRGWTVVATFKDDGYSAFKEVT |
| Ga0208565_12089861 | 3300027662 | Peatlands Soil | MDSGQTDRAEAQLRAGVYARLSETYDAAESVPTQLERGTDHATRRGWAVTATFKDDGFS |
| Ga0209446_11963401 | 3300027698 | Bog Forest Soil | MNDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGTDHAKRRGWTVVATFKDDGYSAFKEITR |
| Ga0207862_11827922 | 3300027703 | Tropical Forest Soil | MQADRAQGQLRAGVYGRLSETYDAAESVPTQIERGTGHAARRGWTVVATFKDDGYSAFNEITRDGGL |
| Ga0209656_102217502 | 3300027812 | Bog Forest Soil | MNSAQADRAEAQLRAGVYARLSETYDAAESVPTQIERGTDHAQRRGWIVAATFKDD |
| Ga0209517_100746541 | 3300027854 | Peatlands Soil | MDSTQADRAEAQLRAGVYARLSETYDAAESVPTQIERGTGHATRR |
| Ga0302225_105427241 | 3300028780 | Palsa | MDDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGTDHAARRGW |
| Ga0307312_101100463 | 3300028828 | Soil | MHDIQADRAEAQLRAGVYARLSETYDAAESVPTQIERGSHHAT |
| Ga0307314_100511691 | 3300028872 | Soil | MDDTQADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGTD |
| Ga0308309_111811122 | 3300028906 | Soil | NDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGAGHAARRGWDRRGHLQG |
| Ga0302179_100322801 | 3300030058 | Palsa | MMVGMDEIRADRAEAQLRAGVYGRLSETYDAAESVPTQLERGTAHANRRGWTVVATFKDDGFSG |
| Ga0318542_106564061 | 3300031668 | Soil | MDNTPADRAEARLRAGVYGRLSETYDAAESVPTQLDRGADHAARRGWTVVATFK |
| Ga0318542_106942392 | 3300031668 | Soil | MDETQEDRARAQLRAGVYGRLSETYDAAESVPTQLDRGTGHAARRGWTVVA |
| Ga0310686_1054993092 | 3300031708 | Soil | MDDTQADRAEAQLRAGVYGRLSETYDAAESVPTQLERGTNHADRRRWTVV |
| Ga0310686_1164594612 | 3300031708 | Soil | MDDMQADGAQAQLRAGVYGRLSETYDAAELVPTQLDRGTDHAARRGWTVVATFKG |
| Ga0318492_101332092 | 3300031748 | Soil | MDNTPADRAEARLRAGVYGRLSETYDAAESVPTQLDRGADHAARRGWTVVATFKDDGYSAFKEITRD |
| Ga0318535_100815241 | 3300031764 | Soil | MDDTQADQAQAPLRAGLYGYLIETYDAAESVSAHLECSTGHA |
| Ga0318568_107450892 | 3300031819 | Soil | MDGTQADRTQAQLRAGVYGRLSETYDAAESVPTQVA |
| Ga0318527_102246522 | 3300031859 | Soil | VNDTQEDRAQAPLRAGVYGRLSETYDAAESVPTQVERGTDHARRRGWAVVATFKDDGY |
| Ga0310909_110830482 | 3300031947 | Soil | MNDTQEDRVHAQLRAGVYGRLSETYDAAESVPTQLGRGTDHARRRGWTVVA |
| Ga0318549_100928411 | 3300032041 | Soil | MDDTRAVWPQAPLRAGVYGRLSETYDAAESVPTQLDRGTDHA |
| Ga0318575_102993941 | 3300032055 | Soil | MNDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLGR |
| Ga0306924_103688793 | 3300032076 | Soil | MNDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGADHARRRGWTV |
| Ga0306924_107129242 | 3300032076 | Soil | MDDTQADQAQAPLRAGLYGYLIETYDAAESVSAHLECSTGHAEQRGWAGVATFKDDGYTAFKEITRDG |
| Ga0318577_103505102 | 3300032091 | Soil | MNDTREDRARAQLRAGVYGRLSETYDAAESVPTQLGRGADHARRRGWAVVATFKDDGYSAFKEVTRDGFGEL |
| Ga0311301_100358511 | 3300032160 | Peatlands Soil | MDSAQEDRAEAQLRAGVYARLSETYDAAESVPTQLERGTGHATRR |
| Ga0311301_103507514 | 3300032160 | Peatlands Soil | MQADRAQARLRAGVYARLSETYDAAESVPTQLERGTGHATRRGWAVTATFKDDGYSGY |
| Ga0311301_114715142 | 3300032160 | Peatlands Soil | MDDTQEDRAQAQLRAGVYGRLSETYDAAESVPTQIDRGAGHAR |
| Ga0311301_119501261 | 3300032160 | Peatlands Soil | MDDTQADKAEAQLRAGVYGRLSETYDAAESVPTQVERGTDHADRRGWTVVATFKDDGYSAFKEITRD |
| Ga0311301_123816012 | 3300032160 | Peatlands Soil | MDDMQADRAEAQLRAGVYARLSETYDAAESVPTQLERGTGHATRRGWAVTATFKG |
| Ga0307471_1021382502 | 3300032180 | Hardwood Forest Soil | MPGTGMSSTQADRAGAQLRADVYARLSETYDAAESVPIQLEHGAEHATRRGRTVVATFKDDG |
| Ga0307471_1025100532 | 3300032180 | Hardwood Forest Soil | MDDTQADRAQAQLRAGLYGRLSETYDAAESVPTQLDRGTDHAARRG |
| Ga0335085_122990641 | 3300032770 | Soil | MRADRAEAQLRAGVYGRLSETYDAAESVPTQLDRGTGHAARRGWTVVATFKDD |
| Ga0335078_115083732 | 3300032805 | Soil | MRAGRAEAQLRAGVYGRLSETYDAAESVPTQLDRGAGHAARRGWRVVATFKDDGYSAFKEITRDGF |
| Ga0335080_104046451 | 3300032828 | Soil | MNDTQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGAD |
| Ga0335081_100679031 | 3300032892 | Soil | MNNTQADRAEAQLRAGVYGRLSETYDAAESVPTQLDRGTDHAARRGWTVVATFKDDGYSAFKEISR |
| Ga0335081_102557661 | 3300032892 | Soil | MDDMQADRAQAQLRAGVYGRLSETYDAAESVPTQLDRGTGHAAR |
| Ga0335075_101755604 | 3300032896 | Soil | MDVTPQDDAGQVLRAAVYARLSETYDAAESVPTQLD |
| Ga0335075_113299892 | 3300032896 | Soil | MDVTPQDDAGQVLRAAVYARLSATYDAAESVPTQLANAGRHAGRHAGRRGWAVVARF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |