Metagenome Family F104300

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104300
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	62 residues
Representative Sequence	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ
Number of Associated Samples	63
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	41.00 %
% of genes from short scaffolds (< 2000 bps)	99.00 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (49.000 % of family members)
Environment Ontology (ENVO)	Unclassified (97.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (97.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 82.54% β-sheet: 0.00% Coil/Unstructured: 17.46%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF13392	HNH_3	24.00
PF04519	Bactofilin	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.00 %
All Organisms	root	All Organisms	24.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.00 %
Viruses	superkingdom	All Organisms → Viruses	22.00 %
cellular organisms	root	All Organisms → cellular organisms	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003375\|JGI26470J50227_1023059	All Organisms → Viruses → Predicted Viral	1334	Open in IMG/M
3300009518\|Ga0116128_1116262	Not Available	780	Open in IMG/M
3300009518\|Ga0116128_1198462	Not Available	564	Open in IMG/M
3300009519\|Ga0116108_1062197	All Organisms → Viruses → Predicted Viral	1166	Open in IMG/M
3300009519\|Ga0116108_1135872	Not Available	733	Open in IMG/M
3300009519\|Ga0116108_1175031	Not Available	634	Open in IMG/M
3300009547\|Ga0116136_1067365	Not Available	969	Open in IMG/M
3300009548\|Ga0116107_1164600	Not Available	603	Open in IMG/M
3300009548\|Ga0116107_1197163	Not Available	530	Open in IMG/M
3300009615\|Ga0116103_1066544	Not Available	975	Open in IMG/M
3300009616\|Ga0116111_1055686	All Organisms → Viruses → Predicted Viral	1121	Open in IMG/M
3300009617\|Ga0116123_1080966	Not Available	882	Open in IMG/M
3300009617\|Ga0116123_1137118	Not Available	636	Open in IMG/M
3300009618\|Ga0116127_1148258	Not Available	588	Open in IMG/M
3300009618\|Ga0116127_1186067	Not Available	506	Open in IMG/M
3300009621\|Ga0116116_1165703	Not Available	576	Open in IMG/M
3300009629\|Ga0116119_1034394	All Organisms → Viruses → Predicted Viral	1350	Open in IMG/M
3300009629\|Ga0116119_1063652	Not Available	943	Open in IMG/M
3300009629\|Ga0116119_1151885	Not Available	578	Open in IMG/M
3300009630\|Ga0116114_1132064	Not Available	646	Open in IMG/M
3300009631\|Ga0116115_1081829	Not Available	836	Open in IMG/M
3300009634\|Ga0116124_1103631	Not Available	804	Open in IMG/M
3300009636\|Ga0116112_1141044	Not Available	672	Open in IMG/M
3300009637\|Ga0116118_1067349	All Organisms → Viruses → Predicted Viral	1244	Open in IMG/M
3300009637\|Ga0116118_1091866	All Organisms → Viruses → Predicted Viral	1027	Open in IMG/M
3300009639\|Ga0116122_1283984	Not Available	509	Open in IMG/M
3300009640\|Ga0116126_1080431	Not Available	1195	Open in IMG/M
3300009645\|Ga0116106_1177206	Not Available	679	Open in IMG/M
3300009645\|Ga0116106_1253741	Not Available	559	Open in IMG/M
3300009646\|Ga0116132_1042682	Not Available	1483	Open in IMG/M
3300009646\|Ga0116132_1082051	All Organisms → Viruses → Predicted Viral	1001	Open in IMG/M
3300009760\|Ga0116131_1050234	All Organisms → Viruses → Predicted Viral	1351	Open in IMG/M
3300009760\|Ga0116131_1141673	Not Available	696	Open in IMG/M
3300009762\|Ga0116130_1047831	Not Available	1359	Open in IMG/M
3300009764\|Ga0116134_1123937	Not Available	923	Open in IMG/M
3300013094\|Ga0164297_10420598	Not Available	512	Open in IMG/M
3300014159\|Ga0181530_10167595	All Organisms → Viruses → Predicted Viral	1236	Open in IMG/M
3300014162\|Ga0181538_10143931	All Organisms → Viruses → Predicted Viral	1372	Open in IMG/M
3300017925\|Ga0187856_1140465	Not Available	919	Open in IMG/M
3300017925\|Ga0187856_1250723	Not Available	624	Open in IMG/M
3300017929\|Ga0187849_1054125	All Organisms → Viruses → Predicted Viral	1856	Open in IMG/M
3300017931\|Ga0187877_1086416	All Organisms → Viruses → Predicted Viral	1333	Open in IMG/M
3300017935\|Ga0187848_10204955	Not Available	846	Open in IMG/M
3300017935\|Ga0187848_10274003	Not Available	708	Open in IMG/M
3300017938\|Ga0187854_10194742	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300017938\|Ga0187854_10248395	Not Available	772	Open in IMG/M
3300017938\|Ga0187854_10335887	Not Available	641	Open in IMG/M
3300017938\|Ga0187854_10448839	Not Available	538	Open in IMG/M
3300017940\|Ga0187853_10195878	Not Available	948	Open in IMG/M
3300017940\|Ga0187853_10230622	Not Available	856	Open in IMG/M
3300017940\|Ga0187853_10246688	Not Available	821	Open in IMG/M
3300017940\|Ga0187853_10426290	Not Available	585	Open in IMG/M
3300017996\|Ga0187891_1301398	Not Available	523	Open in IMG/M
3300017998\|Ga0187870_1066354	Not Available	1482	Open in IMG/M
3300018004\|Ga0187865_1104151	All Organisms → Viruses → Predicted Viral	1038	Open in IMG/M
3300018004\|Ga0187865_1112827	Not Available	986	Open in IMG/M
3300018004\|Ga0187865_1136620	Not Available	870	Open in IMG/M
3300018004\|Ga0187865_1326499	Not Available	503	Open in IMG/M
3300018004\|Ga0187865_1326989	Not Available	502	Open in IMG/M
3300018005\|Ga0187878_1100617	All Organisms → Viruses → Predicted Viral	1182	Open in IMG/M
3300018005\|Ga0187878_1232600	Not Available	676	Open in IMG/M
3300018005\|Ga0187878_1326199	Not Available	545	Open in IMG/M
3300018008\|Ga0187888_1388743	Not Available	528	Open in IMG/M
3300018009\|Ga0187884_10100400	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300018009\|Ga0187884_10183435	Not Available	869	Open in IMG/M
3300018013\|Ga0187873_1106567	All Organisms → Viruses → Predicted Viral	1104	Open in IMG/M
3300018013\|Ga0187873_1235010	Not Available	680	Open in IMG/M
3300018013\|Ga0187873_1313656	Not Available	575	Open in IMG/M
3300018014\|Ga0187860_1134100	All Organisms → Viruses → Predicted Viral	1079	Open in IMG/M
3300018015\|Ga0187866_1226409	Not Available	681	Open in IMG/M
3300018016\|Ga0187880_1126934	All Organisms → Viruses → Predicted Viral	1224	Open in IMG/M
3300018016\|Ga0187880_1199126	Not Available	909	Open in IMG/M
3300018016\|Ga0187880_1219208	Not Available	853	Open in IMG/M
3300018016\|Ga0187880_1396834	Not Available	578	Open in IMG/M
3300018017\|Ga0187872_10186037	Not Available	968	Open in IMG/M
3300018019\|Ga0187874_10225352	Not Available	774	Open in IMG/M
3300018020\|Ga0187861_10055648	All Organisms → Viruses → Predicted Viral	2040	Open in IMG/M
3300018020\|Ga0187861_10478737	Not Available	514	Open in IMG/M
3300018022\|Ga0187864_10074579	All Organisms → Viruses → Predicted Viral	1823	Open in IMG/M
3300018022\|Ga0187864_10508737	Not Available	503	Open in IMG/M
3300018023\|Ga0187889_10341330	Not Available	656	Open in IMG/M
3300018025\|Ga0187885_10430300	Not Available	590	Open in IMG/M
3300018026\|Ga0187857_10522160	Not Available	531	Open in IMG/M
3300018030\|Ga0187869_10234512	Not Available	891	Open in IMG/M
3300018037\|Ga0187883_10234866	Not Available	939	Open in IMG/M
3300018040\|Ga0187862_10282951	All Organisms → Viruses → Predicted Viral	1053	Open in IMG/M
3300018042\|Ga0187871_10623176	Not Available	599	Open in IMG/M
3300025442\|Ga0208034_1048560	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300025442\|Ga0208034_1058592	Not Available	764	Open in IMG/M
3300025459\|Ga0208689_1046682	Not Available	916	Open in IMG/M
3300025459\|Ga0208689_1047696	Not Available	900	Open in IMG/M
3300025460\|Ga0208562_1104777	Not Available	546	Open in IMG/M
3300025469\|Ga0208687_1067595	Not Available	822	Open in IMG/M
3300025472\|Ga0208692_1051574	Not Available	967	Open in IMG/M
3300025496\|Ga0208191_1072277	Not Available	724	Open in IMG/M
3300025506\|Ga0208937_1084986	Not Available	711	Open in IMG/M
3300025576\|Ga0208820_1114891	Not Available	642	Open in IMG/M
3300029817\|Ga0247275_1051193	All Organisms → Viruses → Predicted Viral	1168	Open in IMG/M
3300029817\|Ga0247275_1171653	Not Available	536	Open in IMG/M
3300032675\|Ga0316225_1150055	Not Available	751	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.00%
Terrestrial	Environmental → Terrestrial	2.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	98.00%
Soil	Environmental → Terrestrial → Soil	2.00%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	95.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.00%
Lake	Environmental → Aquatic → Freshwater → Lake	1.00%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	51.00%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	44.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.00%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	1.00%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.00%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	49.00%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	44.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300013094	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300025469	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300032675	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26470J50227_10230594	3300003375	Freshwater	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGEL
Ga0116128_11162622	3300009518	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ*
Ga0116128_11984622	3300009518	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLLTDKQDAVYREATETWTDAQASRADYLNDITQEN*
Ga0116108_10621973	3300009519	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ*
Ga0116108_11358721	3300009519	Peatland	STDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN*
Ga0116108_11750311	3300009519	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGELQ*
Ga0116136_10673652	3300009547	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGELQ*
Ga0116107_11646002	3300009548	Peatland	DITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ*
Ga0116107_11971631	3300009548	Peatland	LFQAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGELQ*
Ga0116103_10665443	3300009615	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDRKGELQ*
Ga0116111_10556862	3300009616	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGEHYDYMA*
Ga0116123_10809662	3300009617	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGEQQG*
Ga0116123_11371182	3300009617	Peatland	KETMSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV*
Ga0116127_11482582	3300009618	Peatland	MSTDYKRDITERAWEIAEERYGLAFYDLPTDKQDAVYREATETWTDAQASQADYLNDITQEN*
Ga0116127_11860671	3300009618	Peatland	MSTDYKMDITERAWEIAEKGYSLDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGELQ*
Ga0116116_11657031	3300009621	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASQADYLNDRKGEHYDYMA*
Ga0116119_10343941	3300009629	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV*
Ga0116119_10636521	3300009629	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGEL
Ga0116119_11518852	3300009629	Peatland	STDYKMDITERAWEIAEKGYGVDFYDLPTDKQDAVYREATEAWTDAQASRADYLNW*
Ga0116114_11320642	3300009630	Peatland	ETMSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGEHYEQRL*
Ga0116115_10818292	3300009631	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASR
Ga0116124_11036312	3300009634	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGELQ*
Ga0116112_11410441	3300009636	Peatland	DYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGEHYEQRL*
Ga0116118_10673492	3300009637	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATEAWTDAMASQADYLNDRKGEHYEQRL*
Ga0116118_10918661	3300009637	Peatland	STDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKCSGV*
Ga0116122_12839841	3300009639	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLSDRKGALQ*
Ga0116126_10804313	3300009640	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATETWTDAQASQADYLN
Ga0116106_11772061	3300009645	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGEHYDYMA*
Ga0116106_12537411	3300009645	Peatland	MASDMKYDIMERAWGISIQRYSVDFYDLPTDKQDAVYREATETWTDAMASRADYLNDRKGELQ*
Ga0116132_10426822	3300009646	Peatland	MASDMKYDIMERAWGISTQRYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGELQ*
Ga0116132_10820511	3300009646	Peatland	NEGKETMSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV*
Ga0116131_10502343	3300009760	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN*
Ga0116131_11416732	3300009760	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATEAWTDAMASQADYLNDRKGEHYEQRL*
Ga0116130_10478314	3300009762	Peatland	MSTDYKMDITERAWEIAEKRYGLDFYALPTDKQDAVYREATEAWTDAQASRADYLNW*
Ga0116134_11239372	3300009764	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAMYREATETWTDAQASQADYLNDITQEN*
Ga0164297_104205981	3300013094	Freshwater	RAWGISIQRYGIDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ*
Ga0181530_101675954	3300014159	Bog	MSTDYKMDITERAWEIAEARYSVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRK
Ga0181538_101439314	3300014162	Bog	MSTDYKMDITERAWEISEKRYGLDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGELQ*
Ga0187856_11404653	3300017925	Peatland	MASDMKYDIMERAWGISIQRYSVDFYDLPTDKQDAVYREATDGWADAMASRADYL
Ga0187856_12507231	3300017925	Peatland	IGTCESADSNEGKETMSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGENL
Ga0187849_10541252	3300017929	Peatland	MRTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ
Ga0187877_10864164	3300017931	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ
Ga0187848_102049552	3300017935	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDRKGELQ
Ga0187848_102740032	3300017935	Peatland	MRTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGEHYDYMA
Ga0187854_101947423	3300017938	Peatland	MSTDYKMDTTERAWEIAEERYGVDFYDLPTDKQDAVYREATETWTDAQASQADYLNDRKGELQ
Ga0187854_102483951	3300017938	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATEAWTDAMASQADYLNDRKGEHYEQRL
Ga0187854_103358871	3300017938	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKCSGV
Ga0187854_104488391	3300017938	Peatland	STDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGELQ
Ga0187853_101958782	3300017940	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATEAWTDDMASQADYLNDRKGEHYEQRL
Ga0187853_102306223	3300017940	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGELQ
Ga0187853_102466881	3300017940	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASRADY
Ga0187853_104262903	3300017940	Peatland	MDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN
Ga0187891_13013982	3300017996	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREASDGWADAMASRADYLNDRKGEHYDYMA
Ga0187870_10663544	3300017998	Peatland	MASDMKYEIMERAWGISIQRYSVDFYDLPTDKQDAVYREATETWADAMASRADYLNDRKGELQ
Ga0187865_11041511	3300018004	Peatland	TDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYCEATDGWTDAMASRADYLNDRKCSG
Ga0187865_11128273	3300018004	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATEAWTDAMASQADYLNDRKGEHYDYMA
Ga0187865_11366201	3300018004	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKG
Ga0187865_13264992	3300018004	Peatland	MSTDYKMDITERAWEIAEERYGLAFYDLPTDKQDAVYREATDGWADAMASQADYLNDITQEN
Ga0187865_13269892	3300018004	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGELQ
Ga0187878_11006171	3300018005	Peatland	MASDMKYEIMERAWGISVQRYSVDFYDLPTDKQDAVYREATETWTDAMAS
Ga0187878_12326003	3300018005	Peatland	DTTERAWEIAEERYGVDFYDLPTDKQDAVYREATETWTDAQASQADYLNDRKGEHYEQRL
Ga0187878_13261991	3300018005	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ
Ga0187888_13887432	3300018008	Peatland	AWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN
Ga0187884_101004002	3300018009	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATETWTDAQASQADYLNDRKGELQ
Ga0187884_101834352	3300018009	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGEHYEQRL
Ga0187873_11065673	3300018013	Peatland	QSLRIGTCESADSNEGKETMSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV
Ga0187873_12350101	3300018013	Peatland	MSTDYKMDITERAWEISEKRYGLDFYDLPTDKQDAVYREATDGWADAM
Ga0187873_13136562	3300018013	Peatland	MSTDYKMDITERAWEIAEARYSVDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQ
Ga0187860_11341001	3300018014	Peatland	CESADSNEGKETMSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV
Ga0187866_12264091	3300018015	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYCEATDGWADAMASQADYLNDRKGEHYEQRL
Ga0187880_11269344	3300018016	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASQADYLNDITQEN
Ga0187880_11991263	3300018016	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDR
Ga0187880_12192081	3300018016	Peatland	ITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGEHYEQRL
Ga0187880_13968341	3300018016	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGEL
Ga0187872_101860371	3300018017	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGELQ
Ga0187874_102253521	3300018019	Peatland	DYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGEHYEQRL
Ga0187861_100556486	3300018020	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVCCEATDGWADAMASRADYLNDRNGELQ
Ga0187861_104787372	3300018020	Peatland	CESADSNEGKETMSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN
Ga0187864_100745796	3300018022	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATEAWTDAMASQADYLNDRKGEHYEQRL
Ga0187864_105087372	3300018022	Peatland	MSTDYKMDTTERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGEHYDYMA
Ga0187889_103413301	3300018023	Peatland	MSTDYKMDITERAWEIAEERYGFDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN
Ga0187885_104303001	3300018025	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKGEHYDYMA
Ga0187857_105221601	3300018026	Peatland	MSTDYKMDITERAWEIAEKLYSLDFYDLPTDKQDAVYREATDGWADAIASQADYLNDRKGEQQG
Ga0187869_102345122	3300018030	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASQADYLNDRKCSGV
Ga0187883_102348663	3300018037	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDRK
Ga0187862_102829512	3300018040	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYLEATDGWADAMASRADYLNDRKG
Ga0187871_106231761	3300018042	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV
Ga0208034_10485602	3300025442	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYCEATDGWADAMASRADYLNDRKGELQ
Ga0208034_10585921	3300025442	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMA
Ga0208689_10466824	3300025459	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGEHYD
Ga0208689_10476962	3300025459	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGENL
Ga0208562_11047771	3300025460	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMASRADYLNDRKGELQ
Ga0208687_10675952	3300025469	Peatland	MSTDYKMDITERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKGELQ
Ga0208692_10515742	3300025472	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASQAD
Ga0208191_10722772	3300025496	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWADAMASQADYLNDITQEN
Ga0208937_10849862	3300025506	Peatland	MSTDYKMDITERAWEIAEERYGLDFYDLPTDKQDAVYREATDGWTDAMASRADYLNDRKCSGV
Ga0208820_11148913	3300025576	Peatland	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATETWTDAQASQADYLNDITQEN
Ga0247275_10511931	3300029817	Soil	TERAWEIAEERYGVDFYDLPTDKQDAVYREATDGWADAMASQADYLNDRKCSGV
Ga0247275_11716531	3300029817	Soil	DITERAWEIAEERYGLDFYDLPTDKQDAVYREATETWTDAQASRADYLNDITQEN
Ga0316225_11500551	3300032675	Freshwater	MASDMKYDIMERAWGISIQRYGVDFYDLPTDKQDAVYREATDGWADAMASQADY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104300

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences