NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104279

Metagenome / Metatranscriptome Family F104279

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104279
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 57 residues
Representative Sequence MKPLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP
Number of Associated Samples 71
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 59.00 %
% of genes near scaffold ends (potentially truncated) 28.00 %
% of genes from short scaffolds (< 2000 bps) 87.00 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(31.000 % of family members)
Environment Ontology (ENVO) Unclassified
(81.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(58.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 62.20%    β-sheet: 0.00%    Coil/Unstructured: 37.80%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00072Response_reg 17.00
PF11925DUF3443 10.00
PF00486Trans_reg_C 6.00
PF01494FAD_binding_3 2.00
PF01451LMWPc 1.00
PF00672HAMP 1.00
PF05199GMC_oxred_C 1.00
PF02583Trns_repr_metal 1.00
PF04264YceI 1.00
PF11005DUF2844 1.00
PF07172GRP 1.00
PF16916ZT_dimer 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 4.00
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 2.00
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 2.00
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 2.00
COG1937DNA-binding transcriptional regulator, FrmR familyTranscription [K] 1.00
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 1.00
COG2353Polyisoprenoid-binding periplasmic protein YceIGeneral function prediction only [R] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.00 %
All OrganismsrootAll Organisms34.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000567|JGI12270J11330_10014035All Organisms → cellular organisms → Bacteria → Proteobacteria5188Open in IMG/M
3300004478|Ga0068972_1599662Not Available888Open in IMG/M
3300009521|Ga0116222_1285049Not Available713Open in IMG/M
3300009523|Ga0116221_1152717Not Available1005Open in IMG/M
3300009523|Ga0116221_1507271Not Available529Open in IMG/M
3300009524|Ga0116225_1120727All Organisms → cellular organisms → Bacteria1206Open in IMG/M
3300009614|Ga0116104_1068405All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300009632|Ga0116102_1005015All Organisms → cellular organisms → Bacteria → Acidobacteria5052Open in IMG/M
3300009632|Ga0116102_1181676Not Available569Open in IMG/M
3300009632|Ga0116102_1199337Not Available538Open in IMG/M
3300009636|Ga0116112_1035128All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA21558Open in IMG/M
3300009639|Ga0116122_1101744Not Available934Open in IMG/M
3300009640|Ga0116126_1208200Not Available627Open in IMG/M
3300009640|Ga0116126_1226844Not Available592Open in IMG/M
3300009643|Ga0116110_1046653Not Available1567Open in IMG/M
3300009644|Ga0116121_1066270All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1130Open in IMG/M
3300009645|Ga0116106_1100382All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans936Open in IMG/M
3300009645|Ga0116106_1190442Not Available653Open in IMG/M
3300009646|Ga0116132_1063496All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1166Open in IMG/M
3300009683|Ga0116224_10413000Not Available642Open in IMG/M
3300009824|Ga0116219_10284936Not Available933Open in IMG/M
3300009839|Ga0116223_10138611Not Available1516Open in IMG/M
3300009839|Ga0116223_10463786Not Available740Open in IMG/M
3300010339|Ga0074046_10185329Not Available1314Open in IMG/M
3300010379|Ga0136449_100979800Not Available1364Open in IMG/M
3300010379|Ga0136449_101784839Not Available921Open in IMG/M
3300010379|Ga0136449_103400711Not Available609Open in IMG/M
3300010379|Ga0136449_104289048Not Available527Open in IMG/M
3300010379|Ga0136449_104670947Not Available501Open in IMG/M
3300011110|Ga0138578_1027116All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans684Open in IMG/M
3300014151|Ga0181539_1114293All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300014152|Ga0181533_1074957All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1607Open in IMG/M
3300014152|Ga0181533_1275769Not Available618Open in IMG/M
3300014158|Ga0181521_10168468All Organisms → cellular organisms → Bacteria1236Open in IMG/M
3300014158|Ga0181521_10305013Not Available815Open in IMG/M
3300014159|Ga0181530_10304596Not Available835Open in IMG/M
3300014161|Ga0181529_10647022Not Available548Open in IMG/M
3300014162|Ga0181538_10100887All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1700Open in IMG/M
3300014164|Ga0181532_10006917All Organisms → cellular organisms → Bacteria9352Open in IMG/M
3300014164|Ga0181532_10118064Not Available1630Open in IMG/M
3300014164|Ga0181532_10207219Not Available1146Open in IMG/M
3300014165|Ga0181523_10815490Not Available508Open in IMG/M
3300014493|Ga0182016_10109325All Organisms → cellular organisms → Bacteria1939Open in IMG/M
3300014496|Ga0182011_10208801Not Available1326Open in IMG/M
3300016750|Ga0181505_10531717Not Available520Open in IMG/M
3300017822|Ga0187802_10032734All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA21851Open in IMG/M
3300017823|Ga0187818_10050049All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA21795Open in IMG/M
3300017925|Ga0187856_1060280Not Available1620Open in IMG/M
3300017925|Ga0187856_1157540Not Available851Open in IMG/M
3300017925|Ga0187856_1203996Not Available715Open in IMG/M
3300017929|Ga0187849_1028672All Organisms → cellular organisms → Bacteria2915Open in IMG/M
3300017931|Ga0187877_1148704Not Available943Open in IMG/M
3300017931|Ga0187877_1363638Not Available548Open in IMG/M
3300017932|Ga0187814_10323097Not Available593Open in IMG/M
3300017935|Ga0187848_10074017Not Available1590Open in IMG/M
3300017935|Ga0187848_10083585Not Available1475Open in IMG/M
3300017940|Ga0187853_10100683All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1422Open in IMG/M
3300017941|Ga0187850_10140128Not Available1140Open in IMG/M
3300017942|Ga0187808_10000753All Organisms → cellular organisms → Bacteria → Acidobacteria10640Open in IMG/M
3300017946|Ga0187879_10672046Not Available576Open in IMG/M
3300017955|Ga0187817_10776308Not Available612Open in IMG/M
3300017988|Ga0181520_10013226All Organisms → cellular organisms → Bacteria → Acidobacteria10451Open in IMG/M
3300017995|Ga0187816_10463964Not Available568Open in IMG/M
3300017996|Ga0187891_1188276Not Available711Open in IMG/M
3300017998|Ga0187870_1270866Not Available577Open in IMG/M
3300018001|Ga0187815_10401577Not Available584Open in IMG/M
3300018009|Ga0187884_10371697Not Available576Open in IMG/M
3300018014|Ga0187860_1371445Not Available541Open in IMG/M
3300018017|Ga0187872_10098635All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA21465Open in IMG/M
3300018017|Ga0187872_10357309Not Available626Open in IMG/M
3300018019|Ga0187874_10462317Not Available510Open in IMG/M
3300018024|Ga0187881_10313021Not Available650Open in IMG/M
3300018024|Ga0187881_10435418Not Available536Open in IMG/M
3300018025|Ga0187885_10103698All Organisms → cellular organisms → Bacteria1379Open in IMG/M
3300018026|Ga0187857_10072599Not Available1712Open in IMG/M
3300018026|Ga0187857_10401976Not Available618Open in IMG/M
3300018030|Ga0187869_10565851Not Available539Open in IMG/M
3300018035|Ga0187875_10106712Not Available1589Open in IMG/M
3300018040|Ga0187862_10523156Not Available711Open in IMG/M
3300018042|Ga0187871_10217672Not Available1064Open in IMG/M
3300018043|Ga0187887_10854812Not Available538Open in IMG/M
3300018046|Ga0187851_10143800All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1448Open in IMG/M
3300018057|Ga0187858_10131361Not Available1682Open in IMG/M
3300025453|Ga0208455_1071709Not Available698Open in IMG/M
3300027854|Ga0209517_10009955All Organisms → cellular organisms → Bacteria10694Open in IMG/M
3300027854|Ga0209517_10016146All Organisms → cellular organisms → Bacteria7426Open in IMG/M
3300027854|Ga0209517_10311221Not Available916Open in IMG/M
3300032160|Ga0311301_12732772Not Available542Open in IMG/M
3300032770|Ga0335085_12151961Not Available562Open in IMG/M
3300032892|Ga0335081_10453736All Organisms → cellular organisms → Bacteria1630Open in IMG/M
3300032892|Ga0335081_11769651Not Available670Open in IMG/M
3300033402|Ga0326728_10002390All Organisms → cellular organisms → Bacteria62706Open in IMG/M
3300033402|Ga0326728_10009569All Organisms → cellular organisms → Bacteria23245Open in IMG/M
3300033402|Ga0326728_10044971All Organisms → cellular organisms → Bacteria6695Open in IMG/M
3300033402|Ga0326728_10881867All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300033402|Ga0326728_11047705Not Available559Open in IMG/M
3300033405|Ga0326727_10022653All Organisms → cellular organisms → Bacteria12103Open in IMG/M
3300033561|Ga0371490_1133320Not Available628Open in IMG/M
3300033983|Ga0371488_0003828All Organisms → cellular organisms → Bacteria15420Open in IMG/M
3300033983|Ga0371488_0155319All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1195Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland31.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil20.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland14.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog13.00%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil9.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment7.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.00%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.00%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.00%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300004478Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009614Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150EnvironmentalOpen in IMG/M
3300009632Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40EnvironmentalOpen in IMG/M
3300009636Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150EnvironmentalOpen in IMG/M
3300009639Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40EnvironmentalOpen in IMG/M
3300009640Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40EnvironmentalOpen in IMG/M
3300009643Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009646Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011110Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014161Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014496Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaGEnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300017996Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40EnvironmentalOpen in IMG/M
3300017998Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150EnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018014Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018025Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300025453Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033561Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fractionEnvironmentalOpen in IMG/M
3300033983Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fractionEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1001403543300000567Peatlands SoilMKPLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP*
Ga0068972_159966223300004478Peatlands SoilMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGVAELVAAFSANSLKRRETKP*
Ga0116222_128504913300009521Peatlands SoilMLYSLFPSGRREPMKPLFDAVALTVRLNMAKAINLYLVGGVIGLSLGAVELVTAFSANSLKRRETKP*
Ga0116221_115271713300009523Peatlands SoilMLYSLFPSGRREPMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP*
Ga0116221_150727123300009523Peatlands SoilMKPLFDAAVLTVKLNIAKVINLYLIGGEIGLSLLAARLVTEFSANSLKRRANKP*
Ga0116225_112072733300009524Peatlands SoilMLYSLFPSGRGEPMKPLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP*
Ga0116104_106840513300009614PeatlandMKPLFDAVVLTVMLNMAKAINLYHLGGVIGLSLGAAELVTAFSANSLKRRANKP*
Ga0116102_100501563300009632PeatlandMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAEFVAAFSANSLKRRETKP*
Ga0116102_118167613300009632PeatlandLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP*
Ga0116102_119933723300009632PeatlandMLYSLFPSGRREPMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKP*
Ga0116112_103512843300009636PeatlandSACVEILYSLFPSGGREPMKPFVDAVVLTVRLNMAKAINLYHLGGVIALSLGAAELVAAFSANSLKRRETKP*
Ga0116122_110174423300009639PeatlandMKTLFDVVVLTVMQNMGKAINLYLLGGEIGLALGAAELVSTFSANGRKKRANKP*
Ga0116126_120820013300009640PeatlandMKPLFDAVVLTVKLNMAKAINLYLVGGEIGLFLLAARLVTEFSANNLKRRAKKP*
Ga0116126_122684423300009640PeatlandMKPLFDAVMLTVRLNIAKAIDLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0116110_104665323300009643PeatlandMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAVFSANSLKRRETKP*
Ga0116121_106627023300009644PeatlandMKPLLDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLMRRKTKP*
Ga0116106_110038213300009645PeatlandSACVEIRYSLFPSGGREPMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP*
Ga0116106_119044223300009645PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKP*
Ga0116132_106349623300009646PeatlandMKPLFDAVVLTVMLNMAKAINLYHLGGVIGLSLGAAELVTAFSANSLKRRANQP*
Ga0116224_1041300023300009683Peatlands SoilMLYSLFPSGRGEPMKPLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0116219_1028493623300009824Peatlands SoilMLYSLFPSGRGEPMKPLFDAVVLAVRLNMAKAINLYHLGGVIGLSLGAAELVATFSANSLKRRESKP*
Ga0116223_1013861123300009839Peatlands SoilMLYSLFPSGRREPMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGVAELVAAFSANSLKRRETKP*
Ga0116223_1046378613300009839Peatlands SoilPADTRREPMKGLFDAVVLTVKLNIAKVINLYLVGGEIGLSLLAARLVTEFSANRLKRRANKP*
Ga0074046_1018532923300010339Bog Forest SoilMKTLFDAVVLTVMQNMAKAINLYLLGGEIGLALGAAELLSTFSANGRKKRANKP*
Ga0136449_10097980033300010379Peatlands SoilMKPLFDAAVLTVKLNIAKVINLYLIGGEIGLSLLAARLVTEFSANSLKRRANEP*
Ga0136449_10178483923300010379Peatlands SoilMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANRLKRRANKP*
Ga0136449_10340071123300010379Peatlands SoilMLNMAKTIDLYLFGGVIGLSLGAAELVTAFSANSLKRRANKP*
Ga0136449_10428904813300010379Peatlands SoilMTKEQRDSDLPGSRRELMKPLFDAIVLAVMLTMAKAVNLYRLGGVIALLLGVAESVTAFSANSLKSRANKL*
Ga0136449_10467094723300010379Peatlands SoilESMKPLFDAVVLAVRLNMAKAINLYHLGGVIALSLGAAELVTAFSANSLKRRETKP*
Ga0138578_102711623300011110Peatlands SoilRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0181539_111429323300014151BogMKPLFGAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP*
Ga0181533_107495723300014152BogMLYSLFPSGRREPMKPLFDAVVLAVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP*
Ga0181533_127576923300014152BogMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANNLKRRANKP*
Ga0181521_1016846823300014158BogMLYSLFPDGRREPMKPLFDAAVLTVRLNIAKAIDLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0181521_1030501313300014158BogMKPLFDAVVLTVKLNIAKAINLNLVGGEIGLSLLAARLVTEFSANSLKRRANKP*
Ga0181530_1030459623300014159BogMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANNLKRRAKKP*
Ga0181529_1064702213300014161BogKLSLRGRCWATCVEMLHSLFPSGRREPMKPLFDAVALTVKLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0181538_1010088723300014162BogMLHSLFPSGRREPMKPLFDAVALTVKLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0181532_1000691763300014164BogMKPLFDAVALTVKLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP*
Ga0181532_1011806433300014164BogMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLVARLVTEFSANSLKRRANKP*
Ga0181532_1020721923300014164BogMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRR
Ga0181523_1081549023300014165BogMLYSLFPSGRREPMKPLFDAVVLTVMLNVAKAIKLYHLGGVTAISLGAAELVAAFSANSLKRRDSKP*
Ga0182016_1010932513300014493BogMKPLFDAAVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANRMKRRANQP*
Ga0182011_1020880123300014496FenMKALFDAVVLALMLNMGKAIGLYRLGGVIGLSLGAAELFTGYPANNFKRRAKQP*
Ga0181505_1053171723300016750PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANRP
Ga0187802_1003273423300017822Freshwater SedimentMKPLFDAVVLALRLNMAKAINLYRLGGVIGLSLCVAELVAAFSANSLKRRETKP
Ga0187818_1005004913300017823Freshwater SedimentIWQVCKVAYARREPMKPLFDAVVLTVKLNIAKAINLYLVGGEIGISLLAARLVTEFSANNLKRRAKKP
Ga0187856_106028013300017925PeatlandMKPLFDAVVLAVRLNMAKAINLYHLGGVIALSLGAAELVAAFSANSLKRRETKP
Ga0187856_115754013300017925PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRGNKP
Ga0187856_120399623300017925PeatlandVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP
Ga0187849_102867233300017929PeatlandMKPLFDAVVLTVMLNMAKAINLYHLGGVIGLSLGAAELVTAFSANSLKRRANKP
Ga0187877_114870423300017931PeatlandMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAVFSANSLKRRETKP
Ga0187877_136363813300017931PeatlandVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP
Ga0187814_1032309713300017932Freshwater SedimentCVEMLYSLFPSGRREPMKPLFDAVVLALRLNMAKAINLYRLGGVIGLSLCVAELVAAFSANSLKRRETKP
Ga0187848_1007401723300017935PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKP
Ga0187848_1008358523300017935PeatlandMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAEFVAAFSANSLKRRETKP
Ga0187853_1010068343300017940PeatlandLSGRGEPMKPLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATK
Ga0187850_1014012823300017941PeatlandMKPLFDAVVLTVMLNMAKAINLYHLGGVIGLSLGAAELVTAFSANSLKKRANKP
Ga0187808_10000753103300017942Freshwater SedimentMKPLFDAVVLALRLNMAKAINLYRLGGVIGLSLCAAELVAAFSANSLKRRETKP
Ga0187879_1067204613300017946PeatlandMKTLFDVVVLTVMQNMGKAINLYLLGGEIGLALGAAELVSTFSANGRKKRAN
Ga0187817_1077630813300017955Freshwater SedimentMLYSLFPSGRREPMKPLFDAVVLTIKLHLAKVINLYVVGGEIGLSLLAARLVTEFSANNLKRRAKKP
Ga0181520_10013226133300017988BogMKPLFDAVALTVKLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0187816_1046396423300017995Freshwater SedimentGITRFSACVEMLYSLFPSGRREPMKPLFDAVVLTVRLNMAKAINLYLLRGVIGLSLSAAELVTAFSANSLKGRATKP
Ga0187891_118827613300017996PeatlandMKPLFDAVVLTVKLNIAKAINLYLAGGEIGLSLLAARLVTEFSANRLKRRANKP
Ga0187870_127086613300017998PeatlandTGVTRSSACVEILYSLFPSGGREPMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP
Ga0187815_1040157723300018001Freshwater SedimentVEMLYSLFPSGRREPMKPLFDAVVLTVRLNMAKAINLYLLRGVIGLSLSAAELVTAFSANSLKGRATKP
Ga0187884_1037169713300018009PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANRLKRRANKP
Ga0187860_137144513300018014PeatlandMKPLFDAVVLTVKLNIAKVINVYLVGGEIGLSLLAARLVTEFSANSLKRRGNKP
Ga0187872_1009863523300018017PeatlandMKPLLDAVALTVRLNMAKAINLYHLGEVIGLSLGAAELVAAFSANSLKRRETKP
Ga0187872_1035730923300018017PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLVARLVTEFSANSLKRRANKP
Ga0187874_1046231723300018019PeatlandAVVLTVKLNIAKVINVYLVGGEIGLSLLAARLVTEFSANSLKRGANKP
Ga0187881_1031302123300018024PeatlandMKPLFDAVMLTVRLNIAKAIDLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0187881_1043541813300018024PeatlandMKTLFDVVVLTVMQNMGKAINLYLLGGEIGLALGAAELVSTFSANGRKKRANKP
Ga0187885_1010369823300018025PeatlandMKPLFDAVVLTVMLNMAKAINLYHLGGVIALSLGAAELVAAFSANSLKRRETKP
Ga0187857_1007259933300018026PeatlandMKPFVDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP
Ga0187857_1040197623300018026PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKPWPTRVFPSTPRY
Ga0187869_1056585113300018030PeatlandKLSVRGRCWATCVEMLYSLFPSGRRKPMKPLLDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0187875_1010671233300018035PeatlandMKPLLDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLMRRKTKP
Ga0187862_1052315613300018040PeatlandMKPLFDAVALTVMLNMGKAINLYRLGGVIGLSLGVAELVTAFSTNSLKRRSN
Ga0187871_1021767223300018042PeatlandMKPLFDGVVLTVKLNIAKVINLYLVGGEIGLSLLAARLVTEFSAN
Ga0187887_1085481223300018043PeatlandMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0187851_1014380013300018046PeatlandMAKAINLYHLGGVIGLSLGAAELVAAFSANSLMRRKTKP
Ga0187858_1013136123300018057PeatlandMKPLFDAVVLTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKS
Ga0208455_107170923300025453PeatlandLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRATKP
Ga0209517_1000995553300027854Peatlands SoilMKPLFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRESKP
Ga0209517_1001614643300027854Peatlands SoilMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGVAELVAAFSANSLKRRETKP
Ga0209517_1031122113300027854Peatlands SoilMKTLFDAVVLTVMQNMAKAINLYLLGGEIGLALCAAELVSTFSANGRKRRANEP
Ga0311301_1273277223300032160Peatlands SoilMKPLFDAIVLAVMLTMAKAVNLYRLGGVIALLLGVAESVTAFSANSLKSRANKL
Ga0335085_1215196123300032770SoilDTRREPMKTLFDAVAVTVMQNMAKAINLYLLGGEIGLVLGAAELVSTFSVNGRKRRANKP
Ga0335081_1045373623300032892SoilMKPLFDAVMLTVRLNITKAIDLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0335081_1176965113300032892SoilMKPVFDAVVLTVKLNMAKAINLYLVGGEIGLSLRAARLVTEFSAKSLKRRANKP
Ga0326728_10002390253300033402Peat SoilMKPVFDAVVLTVRLNMAKAINLYHLGGVIGLSLGAAEFVAAFSANSLKRRETKP
Ga0326728_10009569153300033402Peat SoilMKPLFDAVVLTVKLNIANAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKP
Ga0326728_1004497143300033402Peat SoilMKPLFCGVVLTVTQNMGKAINLYRLGGVMGLSLGVAKMVTAFSSSSLKRRTNKP
Ga0326728_1088186723300033402Peat SoilMLYSLFPSGRREPVKPLFDAVVLTVRLNMAKAINLYLLGGVIGLLFGGAEFVAAFSANSLKRRETKL
Ga0326728_1104770523300033402Peat SoilMAKAINLYHLGGVIALSLGAAELVAAFSANSLKRRETKP
Ga0326727_10022653143300033405Peat SoilTVKLNIAKAINLYLVGGEIGLSLLAARLVTEFSANSLKRRANKP
Ga0371490_113332023300033561Peat SoilTCVEMLYSLFPSGRREPMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0371488_0003828_851_10543300033983Peat SoilMLYSLFPSGRREPMKPLFDAVALTVRLNMAKAINLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP
Ga0371488_0155319_158_3613300033983Peat SoilMLYSLFPGGRREPMKPLFDAVMLTVRLNIAKAIDLYHLGGVIGLSLGAAELVAAFSANSLKRRETKP


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