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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F104265 |
| Family Type | Metagenome |
| Number of Sequences | 100 |
| Average Sequence Length | 48 residues |
| Representative Sequence | VLLEPAVILEGLAVKELISGLLAVFTVTVSVDVVEPAALVAVSV |
| Number of Associated Samples | 83 |
| Number of Associated Scaffolds | 98 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 4.88 % |
| % of genes near scaffold ends (potentially truncated) | 70.00 % |
| % of genes from short scaffolds (< 2000 bps) | 66.00 % |
| Associated GOLD sequencing projects | 78 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.31 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (79.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog (15.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (46.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
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| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 29.17% β-sheet: 0.00% Coil/Unstructured: 70.83% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 98 Family Scaffolds |
|---|---|---|
| PF03950 | tRNA-synt_1c_C | 5.10 |
| PF01554 | MatE | 1.02 |
| PF07394 | DUF1501 | 1.02 |
| PF02739 | 5_3_exonuc_N | 1.02 |
| PF08530 | PepX_C | 1.02 |
| PF05960 | DUF885 | 1.02 |
| PF07690 | MFS_1 | 1.02 |
| PF03330 | DPBB_1 | 1.02 |
| PF07638 | Sigma70_ECF | 1.02 |
| PF07676 | PD40 | 1.02 |
| PF00754 | F5_F8_type_C | 1.02 |
| PF00749 | tRNA-synt_1c | 1.02 |
| PF00589 | Phage_integrase | 1.02 |
| PF01471 | PG_binding_1 | 1.02 |
| PF02826 | 2-Hacid_dh_C | 1.02 |
| PF04773 | FecR | 1.02 |
| PF04226 | Transgly_assoc | 1.02 |
| PF00486 | Trans_reg_C | 1.02 |
| PF03062 | MBOAT | 1.02 |
| PF00860 | Xan_ur_permease | 1.02 |
| PF07603 | DUF1566 | 1.02 |
| PF08238 | Sel1 | 1.02 |
| COG ID | Name | Functional Category | % Frequency in 98 Family Scaffolds |
|---|---|---|---|
| COG0008 | Glutamyl- or glutaminyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 6.12 |
| COG0258 | 5'-3' exonuclease Xni/ExoIX (flap endonuclease) | Replication, recombination and repair [L] | 1.02 |
| COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family | Transcription [K] | 1.02 |
| COG2261 | Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family | General function prediction only [R] | 1.02 |
| COG2936 | Predicted acyl esterase | General function prediction only [R] | 1.02 |
| COG4805 | Uncharacterized conserved protein, DUF885 family | Function unknown [S] | 1.02 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 79.00 % |
| All Organisms | root | All Organisms | 21.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300004082|Ga0062384_100264611 | Not Available | 1050 | Open in IMG/M |
| 3300004091|Ga0062387_100255197 | All Organisms → cellular organisms → Bacteria | 1099 | Open in IMG/M |
| 3300004092|Ga0062389_100697355 | Not Available | 1188 | Open in IMG/M |
| 3300004092|Ga0062389_103282848 | Not Available | 606 | Open in IMG/M |
| 3300004152|Ga0062386_100049492 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 3160 | Open in IMG/M |
| 3300004635|Ga0062388_100488325 | Not Available | 1099 | Open in IMG/M |
| 3300005591|Ga0070761_10703749 | Not Available | 633 | Open in IMG/M |
| 3300005712|Ga0070764_10294178 | Not Available | 935 | Open in IMG/M |
| 3300005921|Ga0070766_10438834 | Not Available | 860 | Open in IMG/M |
| 3300009616|Ga0116111_1091784 | Not Available | 781 | Open in IMG/M |
| 3300009629|Ga0116119_1169163 | Not Available | 545 | Open in IMG/M |
| 3300009638|Ga0116113_1146860 | Not Available | 589 | Open in IMG/M |
| 3300009640|Ga0116126_1278547 | Not Available | 518 | Open in IMG/M |
| 3300010339|Ga0074046_10513763 | Not Available | 714 | Open in IMG/M |
| 3300010343|Ga0074044_10011297 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83 | 6755 | Open in IMG/M |
| 3300010343|Ga0074044_10053116 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2777 | Open in IMG/M |
| 3300010343|Ga0074044_10932815 | Not Available | 568 | Open in IMG/M |
| 3300010379|Ga0136449_100074163 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 7254 | Open in IMG/M |
| 3300010379|Ga0136449_102810501 | Not Available | 687 | Open in IMG/M |
| 3300014158|Ga0181521_10592238 | Not Available | 520 | Open in IMG/M |
| 3300014160|Ga0181517_10029490 | Not Available | 3603 | Open in IMG/M |
| 3300014160|Ga0181517_10109337 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1598 | Open in IMG/M |
| 3300014161|Ga0181529_10007200 | All Organisms → cellular organisms → Bacteria | 11147 | Open in IMG/M |
| 3300014164|Ga0181532_10166064 | Not Available | 1316 | Open in IMG/M |
| 3300014167|Ga0181528_10301231 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 867 | Open in IMG/M |
| 3300014168|Ga0181534_10419180 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 744 | Open in IMG/M |
| 3300014169|Ga0181531_10023204 | All Organisms → cellular organisms → Bacteria | 3566 | Open in IMG/M |
| 3300014201|Ga0181537_11216953 | Not Available | 508 | Open in IMG/M |
| 3300014489|Ga0182018_10569016 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 596 | Open in IMG/M |
| 3300014657|Ga0181522_10000433 | All Organisms → cellular organisms → Bacteria | 31673 | Open in IMG/M |
| 3300017942|Ga0187808_10087431 | Not Available | 1347 | Open in IMG/M |
| 3300017943|Ga0187819_10026535 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 3396 | Open in IMG/M |
| 3300017955|Ga0187817_10810847 | Not Available | 598 | Open in IMG/M |
| 3300017970|Ga0187783_10078183 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii | 2436 | Open in IMG/M |
| 3300017970|Ga0187783_11113493 | Not Available | 569 | Open in IMG/M |
| 3300017970|Ga0187783_11303866 | Not Available | 523 | Open in IMG/M |
| 3300017972|Ga0187781_11146586 | Not Available | 571 | Open in IMG/M |
| 3300017975|Ga0187782_10031552 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 3850 | Open in IMG/M |
| 3300017975|Ga0187782_10062691 | Not Available | 2708 | Open in IMG/M |
| 3300017988|Ga0181520_10020634 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068 | 7539 | Open in IMG/M |
| 3300018006|Ga0187804_10261228 | Not Available | 749 | Open in IMG/M |
| 3300018008|Ga0187888_1263970 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 668 | Open in IMG/M |
| 3300018016|Ga0187880_1171811 | Not Available | 1002 | Open in IMG/M |
| 3300018022|Ga0187864_10319326 | Not Available | 688 | Open in IMG/M |
| 3300018038|Ga0187855_10077782 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 2024 | Open in IMG/M |
| 3300018038|Ga0187855_10388936 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 813 | Open in IMG/M |
| 3300018038|Ga0187855_10910357 | Not Available | 513 | Open in IMG/M |
| 3300018043|Ga0187887_10973200 | Not Available | 501 | Open in IMG/M |
| 3300018062|Ga0187784_11236024 | Not Available | 592 | Open in IMG/M |
| 3300018085|Ga0187772_10226342 | Not Available | 1264 | Open in IMG/M |
| 3300021088|Ga0210404_10880753 | Not Available | 512 | Open in IMG/M |
| 3300021432|Ga0210384_11381418 | Not Available | 609 | Open in IMG/M |
| 3300023250|Ga0224544_1020249 | Not Available | 919 | Open in IMG/M |
| 3300025477|Ga0208192_1101824 | Not Available | 515 | Open in IMG/M |
| 3300025480|Ga0208688_1112534 | Not Available | 515 | Open in IMG/M |
| 3300027745|Ga0209908_10198354 | Not Available | 549 | Open in IMG/M |
| 3300027812|Ga0209656_10465183 | Not Available | 557 | Open in IMG/M |
| 3300027853|Ga0209274_10403839 | Not Available | 706 | Open in IMG/M |
| 3300027869|Ga0209579_10786441 | Not Available | 514 | Open in IMG/M |
| 3300027889|Ga0209380_10720272 | Not Available | 571 | Open in IMG/M |
| 3300028775|Ga0302231_10275214 | Not Available | 705 | Open in IMG/M |
| 3300028788|Ga0302189_10152044 | Not Available | 999 | Open in IMG/M |
| 3300028806|Ga0302221_10342188 | Not Available | 652 | Open in IMG/M |
| 3300029908|Ga0311341_10706190 | Not Available | 562 | Open in IMG/M |
| 3300029913|Ga0311362_10242162 | Not Available | 1978 | Open in IMG/M |
| 3300029915|Ga0311358_10417452 | Not Available | 1078 | Open in IMG/M |
| 3300029951|Ga0311371_12662259 | Not Available | 503 | Open in IMG/M |
| 3300030056|Ga0302181_10219177 | Not Available | 874 | Open in IMG/M |
| 3300030057|Ga0302176_10209421 | Not Available | 778 | Open in IMG/M |
| 3300030503|Ga0311370_12289055 | Not Available | 527 | Open in IMG/M |
| 3300030618|Ga0311354_10004886 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 18502 | Open in IMG/M |
| 3300030737|Ga0302310_10385310 | Not Available | 770 | Open in IMG/M |
| 3300031234|Ga0302325_13038193 | Not Available | 541 | Open in IMG/M |
| 3300031261|Ga0302140_10275786 | Not Available | 1444 | Open in IMG/M |
| 3300031525|Ga0302326_12432928 | Not Available | 659 | Open in IMG/M |
| 3300032783|Ga0335079_11375650 | Not Available | 702 | Open in IMG/M |
| 3300032893|Ga0335069_12013259 | Not Available | 608 | Open in IMG/M |
| 3300033823|Ga0334837_056845 | Not Available | 965 | Open in IMG/M |
| 3300033982|Ga0371487_0226629 | Not Available | 878 | Open in IMG/M |
| 3300034170|Ga0370487_0000022 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 99317 | Open in IMG/M |
| 3300034282|Ga0370492_0180066 | Not Available | 863 | Open in IMG/M |
| 3300034282|Ga0370492_0226689 | Not Available | 760 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 15.00% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 13.00% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 9.00% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 9.00% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 8.00% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 7.00% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 7.00% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 5.00% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 4.00% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 3.00% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.00% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 2.00% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 2.00% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 2.00% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.00% |
| Thawing Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost | 1.00% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.00% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 1.00% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 1.00% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
| 3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
| 3300009616 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 | Environmental | Open in IMG/M |
| 3300009629 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 | Environmental | Open in IMG/M |
| 3300009638 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 | Environmental | Open in IMG/M |
| 3300009640 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 | Environmental | Open in IMG/M |
| 3300009644 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 | Environmental | Open in IMG/M |
| 3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300014158 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG | Environmental | Open in IMG/M |
| 3300014160 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG | Environmental | Open in IMG/M |
| 3300014161 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG | Environmental | Open in IMG/M |
| 3300014162 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG | Environmental | Open in IMG/M |
| 3300014164 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG | Environmental | Open in IMG/M |
| 3300014167 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG | Environmental | Open in IMG/M |
| 3300014168 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300014489 | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG | Environmental | Open in IMG/M |
| 3300014495 | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG | Environmental | Open in IMG/M |
| 3300014499 | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG | Environmental | Open in IMG/M |
| 3300014657 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300017988 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG | Environmental | Open in IMG/M |
| 3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
| 3300018008 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40 | Environmental | Open in IMG/M |
| 3300018016 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40 | Environmental | Open in IMG/M |
| 3300018022 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40 | Environmental | Open in IMG/M |
| 3300018038 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10 | Environmental | Open in IMG/M |
| 3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
| 3300018062 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300021088 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300023250 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14 | Environmental | Open in IMG/M |
| 3300024225 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5 | Host-Associated | Open in IMG/M |
| 3300025404 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes) | Environmental | Open in IMG/M |
| 3300025477 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300025480 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes) | Environmental | Open in IMG/M |
| 3300027745 | Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M | Environmental | Open in IMG/M |
| 3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
| 3300028788 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2 | Environmental | Open in IMG/M |
| 3300028806 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1 | Environmental | Open in IMG/M |
| 3300029908 | II_Bog_E1 coassembly | Environmental | Open in IMG/M |
| 3300029913 | III_Bog_N3 coassembly | Environmental | Open in IMG/M |
| 3300029915 | III_Bog_E1 coassembly | Environmental | Open in IMG/M |
| 3300029920 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3 | Environmental | Open in IMG/M |
| 3300029944 | II_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300029954 | I_Bog_N3 coassembly | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030056 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3 | Environmental | Open in IMG/M |
| 3300030057 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1 | Environmental | Open in IMG/M |
| 3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030737 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031261 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1 | Environmental | Open in IMG/M |
| 3300031524 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3 | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300033823 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34 | Environmental | Open in IMG/M |
| 3300033982 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction | Environmental | Open in IMG/M |
| 3300034170 | Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16 | Environmental | Open in IMG/M |
| 3300034282 | Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0062384_1002646111 | 3300004082 | Bog Forest Soil | DPETILVGLAVKELIVGFGLLAALTVTVNVEVVELVALVAVSV* |
| Ga0062387_1002551973 | 3300004091 | Bog Forest Soil | PVVAQLNVLLEPEVMRVGLAVKELIAGFGLLVVLTVMVSVDVAAPAALVAVSV* |
| Ga0062389_1006973553 | 3300004092 | Bog Forest Soil | LLEPEKILAGLAVKELIVGLPAVFTVTVAVDVAEPEAFVAVSV* |
| Ga0062389_1032828481 | 3300004092 | Bog Forest Soil | MAMPVAPVVAQLSMLLEPEAMLAGLAVKELIVGLLGGLPGAVTVTVAVDVAVPAVLVAVSV* |
| Ga0062386_1000494921 | 3300004152 | Bog Forest Soil | VLLEPEVIVVGLAAKELIVGLLAVLTVTVCIDVTEPAELVAVSV* |
| Ga0062388_1004883252 | 3300004635 | Bog Forest Soil | MAMLVAPVVAQLNVLLEPEVMLVGLAVKEPIVGIGLLAGFTVTVSVDVVEPAALVAVSV* |
| Ga0070761_107037491 | 3300005591 | Soil | LEPDVILEGLALKELISGLLAVFTVTVCVDVVPPAALVAVSV* |
| Ga0070764_102941783 | 3300005712 | Soil | LEPDVILEGLALKELISGLLAVFTVTVCVDVVSPAALVAVSV* |
| Ga0070766_104388343 | 3300005921 | Soil | APVVTQLSVLLEPDVILEGLALKELISGLLAVFTVTVCVDVVSPAALVAVSV* |
| Ga0116111_10917841 | 3300009616 | Peatland | ILVGLAVKELIIGLLAVFTVTVSMDVVEPAVLVAVSV* |
| Ga0116119_11691632 | 3300009629 | Peatland | FQFNVLLEPEVMAAGLAVKELIVGLPDVLTVTVKVEVVEAAVLLAVNV* |
| Ga0116113_11468601 | 3300009638 | Peatland | AQISVLLEPEVILVGLAVNELMIGLPAVVTVTISVDVVEPAALVAVNM* |
| Ga0116126_12785473 | 3300009640 | Peatland | QLSVLLEPPVILAGLAEKELIVGLLVFTVTVSVDVVGPAALVAVSV* |
| Ga0116121_13048591 | 3300009644 | Peatland | MAMLVAPVVAQLSVLLAPEAILAGLSPKDVIAGLLGAVTVTVAVDVTEPAALVAVSV* |
| Ga0116121_13048592 | 3300009644 | Peatland | MAMLVAPVVAQLSVLLAPEAILAGLAPKDVIAGLLRAVTVTVAVDVTEPAALVAVSV* |
| Ga0074046_105137632 | 3300010339 | Bog Forest Soil | LLEPEVILVGLAVKELIVGLFGMFTVTVSVDVTEPAALVAVSV* |
| Ga0074044_100112975 | 3300010343 | Bog Forest Soil | MLVAPVVAQLSVLLEPEAMLVGLAVKELIVGLLAAFTVRDSVEVAEPAALVAVSV* |
| Ga0074044_100531161 | 3300010343 | Bog Forest Soil | AVMLGGVAVKELIVGLFEAFTETFTVEVAAPAASVAVSV* |
| Ga0074044_102094691 | 3300010343 | Bog Forest Soil | VGLAVKELITGAPVVFTLTVRVDVVEPEALVAVSV* |
| Ga0074044_109328151 | 3300010343 | Bog Forest Soil | VAQVNVLLEPEEIPVGLAVKELITGLLAMFTVTVSADVVEPAALVAVSV* |
| Ga0136449_1000741634 | 3300010379 | Peatlands Soil | LVAPVVAQLSMQLEPELMLAGLAVKELMVGLPGVFAVTVTVTVDVAEPAALVAVSV* |
| Ga0136449_1028105012 | 3300010379 | Peatlands Soil | LEGLAVKELIVGLPVVFTVTFSVDVAEPAALVAVSV* |
| Ga0181521_105922382 | 3300014158 | Bog | LLEPEVIVVGLAVKELMVGLLGMFTVTVRVDVAEPAALVAVSV* |
| Ga0181517_100294908 | 3300014160 | Bog | SVLLEPELILVGLAVKALIVGALCTVTVCVDVTEPAASVAVNV* |
| Ga0181517_101093373 | 3300014160 | Bog | MAMLVAPVVAQLSVLLARDAILAGLAPKDVIAGLLGAVTVTVAVDVTEPAALVAVSV* |
| Ga0181529_100072001 | 3300014161 | Bog | SVLLEPELIVVGLAVKPLIVGALCTVTVCVDVTEPAVSVAVSV* |
| Ga0181529_100221685 | 3300014161 | Bog | MAMLVAPVVSQLSVLLAPEAILAGLAPKDVIAGLLGAVTVTVAVDVTEPAALVAVSV* |
| Ga0181538_101622971 | 3300014162 | Bog | MAMLVAPVVAQLSVLLAPEAILAGLAPKDVIAGLLGAVTVTVAVDVTDPAA |
| Ga0181532_101660642 | 3300014164 | Bog | QLSVLLEPAVILAGLAEKELIVGLLVFTVTVSVEVVETAALVAVSV* |
| Ga0181528_103012311 | 3300014167 | Bog | MAMLAAPVVAQLKVLLAPEVMLVGLAVKELITGLLGALTVTVTVAVVEPTEFVAVNV* |
| Ga0181534_104191802 | 3300014168 | Bog | VIATLVAPVVDQLSVLLEPEAMLSELAEKELITGLLAAATVTVTFDTAEPAALVAVNV* |
| Ga0181531_100232044 | 3300014169 | Bog | MAMPVAPVVTQLNVLLEPEVTRVGLAVKELMVGVPDALAVTVTVAVELVEPEALVAVSV* |
| Ga0181526_100098378 | 3300014200 | Bog | MAMLVAPVVAQLSVLLAPEAILAGLAPKDVIAGLLGAVTVTVAVDVTDPAALVAVSV* |
| Ga0181526_100098379 | 3300014200 | Bog | MAMLVAPVVAQLSVLLAPEAILAGLAPKDVIAGLLGAVTVTVAVDVT |
| Ga0181537_112169531 | 3300014201 | Bog | VAQLKVLLAPEVMLVGLAVKELITGLVGALTVTVAVAVVEPAEFVAVNV* |
| Ga0182018_105690161 | 3300014489 | Palsa | TQLRVLLEPGVMLVGLAVKELMVGLLGGALTVTVAVDVTEAAPLVAVSV* |
| Ga0182015_102906762 | 3300014495 | Palsa | VVGLAVKELIVGLPEILNVTVTVDVEEPLALVAVSV* |
| Ga0182012_100432151 | 3300014499 | Bog | PEWIVVKLAAKELIDGTLPAFTVMVCVDVTEPAALVAVSV* |
| Ga0181522_1000043321 | 3300014657 | Bog | MAMLVAPVVTQLNVLLEPEVTRVGLAVKELMVGVPDALAVTVTVAVELVEPEALVAVSV* |
| Ga0187808_100874313 | 3300017942 | Freshwater Sediment | GLMAMFVAPVVVQLRVLLEPEVMLVGFAENESIVSLLVPLIVTEAVDVTEPAALVAVNV |
| Ga0187819_100265357 | 3300017943 | Freshwater Sediment | MAILVAPVVVQLSVLLEPEVMLAGLAVKELIVGLLAPFTVTVSVDMAEPAALVAVSV |
| Ga0187817_108108471 | 3300017955 | Freshwater Sediment | PVVVQLSLLLEPEVILVGLAVKELIVGLLAAFTVTVSVDVADPAALVAVSV |
| Ga0187783_100781834 | 3300017970 | Tropical Peatland | VAPEVAQLSVLLEPEVMLEGLAVKELIVGLLELFVFTVTVTVEAAEPDELVAVSV |
| Ga0187783_111134931 | 3300017970 | Tropical Peatland | QLSVLLEPEVMAVGLAAKELITGGLAAFTVTVSVDVVEPVALVAVSV |
| Ga0187783_113038662 | 3300017970 | Tropical Peatland | AMVVAPVVDQLSELLDPELIVLGLAVKELMAGLLEAGLTVTVSFRVLEPTELVAVSV |
| Ga0187781_111465861 | 3300017972 | Tropical Peatland | LEPDVMLAGLAVKELIVGLLAVLTVTVRVDVVEPEELVAVRV |
| Ga0187782_100315522 | 3300017975 | Tropical Peatland | MAMLVAPDVAQLRVELDPEVILAGLAVKELIAGLLDVFTETVNVDVLEPVALVAVSV |
| Ga0187782_100626911 | 3300017975 | Tropical Peatland | AMLVAPVVAQLRVLLEPEAMLVGLAVKELITGLLAAFTVTVAVAVVEPALLAAVSV |
| Ga0187782_115351912 | 3300017975 | Tropical Peatland | DPEVMLEGLAVKELIVGLLELFVFTVTVTVEAAEPDELVAVSV |
| Ga0181520_100206349 | 3300017988 | Bog | VLLEPELIVVGLAVKALMVGTLGMFTVTVCVDVTEPARLVAVSV |
| Ga0187804_102612282 | 3300018006 | Freshwater Sediment | EGLAVKELIVGLPVVFTVTFSVDVAEPAALVAVSV |
| Ga0187888_12639701 | 3300018008 | Peatland | LVGIAVKELIIGLLAVFTVTVSVDVVEPAALVAVSV |
| Ga0187880_11718111 | 3300018016 | Peatland | LSVLLEPELILVGLAVKALIVGALCTVTVCVDVTDPAASVAVSI |
| Ga0187864_103193262 | 3300018022 | Peatland | VAQLSVLLEPEAMLVGSAVNELIVGLFAALTVTVAVAVAEPAALVAVSV |
| Ga0187855_100777821 | 3300018038 | Peatland | VAPLVIQLRVLLEPDVMLVGLAVKELMVGLLGCALTVTVAVDVTEPAALVAVSV |
| Ga0187855_103889362 | 3300018038 | Peatland | VLLEPGVMLVGLAVKELMVGLLGGALTVTVAVDVTEPAPLVAVSV |
| Ga0187855_109103571 | 3300018038 | Peatland | VAPLVAQLSTLLEPEVILAGLAVKELMVGMLAAAVTVTVTVAVAEPAELVAVSV |
| Ga0187887_109732002 | 3300018043 | Peatland | VAQLSVLLEPELILVGPAVKELISGLPAVFTVTVSVDVVEPATLVAVSV |
| Ga0187784_112360242 | 3300018062 | Tropical Peatland | EVVQPSMLLEPDVTLVGLAVKELITGLLGGFTVTVSVDVAEPAALLAVSV |
| Ga0187772_102263421 | 3300018085 | Tropical Peatland | LVAPAVAQLSVLVEPDVILAGLAVKELIAGLPDALTVTVSVDVVEPVALVAVSV |
| Ga0210404_108807532 | 3300021088 | Soil | PFVAQLNMLLEPEVIVEGLAVKEPIVGLPVVFTVTVNVEIAEPAGLVAVSV |
| Ga0210384_113814182 | 3300021432 | Soil | NLLIAPEVILEGLAVKELIVGFPVVFTVTVSVDVAEPAALVAVSV |
| Ga0224544_10202493 | 3300023250 | Soil | EVIREGLAVKELISGLLAVFTVTVSVDVVEPAALVAVSV |
| Ga0224572_11008871 | 3300024225 | Rhizosphere | EGMLAGLAVKELIVGLPAVFTVMVAVDVAEPAELVAVSV |
| Ga0208936_10485691 | 3300025404 | Peatland | EPEVMAAGLAVKELIVGLPDVLTVTVKVEVVEAAVLLAVNV |
| Ga0208192_11018241 | 3300025477 | Peatland | VMARLVAPVVAQLSALLEPEVIVVGLAVKELMVGLLGMFTVTVRVDVAEPAALVAVSV |
| Ga0208688_11125343 | 3300025480 | Peatland | SVLLEPEAILAGLAVKELIVGALGVFTVTVCIDVTEPARLVAVSV |
| Ga0209908_101983541 | 3300027745 | Thawing Permafrost | VLLEPEVIPVGLAVKELITGLLAEFTVTVSVDEVEPAALVAVRV |
| Ga0209656_104651831 | 3300027812 | Bog Forest Soil | VTQLKVLLEPEVMLAGLAVKELTVGLLTAFTVMVRVDVVEPAALVAVSV |
| Ga0209274_104038393 | 3300027853 | Soil | ILEGLALKELISGLLAVFTVTVCVDVVPPAALVAVSV |
| Ga0209579_107864412 | 3300027869 | Surface Soil | PGVIPILVAPVVTQLNLLLAPEVTLEGLAVKELIVGLPVVFTVTVSVDVAEPAALVAFSV |
| Ga0209380_107202721 | 3300027889 | Soil | TQLSVLLEPDVILEGLALKELISGLLAVFTVTVSVDVVEPAALVAVSV |
| Ga0302231_102752141 | 3300028775 | Palsa | VTQLSVLLEPEVILEGLAVKELISGLLAVFTVTVCVDVVSPAALVAVSV |
| Ga0302189_101520443 | 3300028788 | Bog | PLVAQLSILLEPGLILVGLAVKELIVGMLAVFTVTVCVEVTEPAALVAVSV |
| Ga0302221_103421881 | 3300028806 | Palsa | MARLLAPVVTQLSVLLEPEVILEGLAVKELISGLLAVFTVTVSVDVVEPAALVAVSV |
| Ga0311341_107061901 | 3300029908 | Bog | SVLLEPGLILVGLAAKELIVGMLAVFTVTVSVDVTEPVVLVAVSV |
| Ga0311362_102421623 | 3300029913 | Bog | PGLILVGLAVKELIVGMLAVFTVTVCVEVTEPAALVAVSV |
| Ga0311358_104174522 | 3300029915 | Bog | GVMAILLAPIVAQLSVLLNPDAILAGLAVNELIVGLAAAVTVTVSVDVLEPAAFVAVSV |
| Ga0302142_11894691 | 3300029920 | Bog | EWIVVRLAAKELIDGTLPAFTVMVCVDVTEPAVLDAVRV |
| Ga0311352_106393281 | 3300029944 | Palsa | PEEIVVGLAVKELIVGLPEILNVMFTVDVEEPLALVAVSV |
| Ga0311371_126622591 | 3300029951 | Palsa | MLMAPAVAQLSVLLEPAVMPVGLAVKEPITGLPVVFTAMVSVDVVEPAALVAVSV |
| Ga0311331_100327753 | 3300029954 | Bog | VRLAAKELIDGTLPAFTVMVCVDVTEPAALVAVSV |
| Ga0302177_101565033 | 3300030053 | Palsa | VVGLAVKELIVGLPEILNVMFTVDVEEPLALVAVSV |
| Ga0302181_102191772 | 3300030056 | Palsa | VLLEPAVMPVGLAVKEPITGLPVVFTAMVSVDVVEPAALVAVSV |
| Ga0302176_102094212 | 3300030057 | Palsa | VLLEPAVILEGLAVKELISGLLAVFTVTVSVDVVEPAALVAVSV |
| Ga0311370_108622971 | 3300030503 | Palsa | LEPEEIVVGLAVKELIVGLPEILNVTVTVDVEEPLALVAVSV |
| Ga0311370_122890551 | 3300030503 | Palsa | VMASLLVPVVTQLSVLLEPEVIREGLAVKELISGLLAVFTVTVSVDVVEPAALVAVSV |
| Ga0311354_100048861 | 3300030618 | Palsa | PGVMARLVAPVVTQLSMLLVPEVTLAGLAVKELITGLSTVFTVRVSIDVVDPAALLAVSM |
| Ga0302310_103853102 | 3300030737 | Palsa | APIVAQLSMLLEPEEIVVGLAVKELIVGLPEILNVTVTVDVEEPLALVAVSV |
| Ga0302325_130381931 | 3300031234 | Palsa | PVVTQLSVLLEPEVMLVGLAMKELMVGTVVVFTVTVRVELVEPAALVATSV |
| Ga0302140_102757863 | 3300031261 | Bog | SMLLEPGLILVGLAAKELIFGMLAVFTVTVCVEVTEPAALVAVSV |
| Ga0302320_100605238 | 3300031524 | Bog | VKLPGAMEILVAPVVTQLSVLLEPEAMLAGLAVKLVMVGLLGAVTVTVAVAVAE |
| Ga0302326_124329281 | 3300031525 | Palsa | PVVTQLSMLLVPEVTLAGLAVKELITGLSTVFTVRVSIDVVDPAALLAVSM |
| Ga0335079_113756501 | 3300032783 | Soil | APVTTQLRVELEPDVTLGGLAAKELIEGLPGAFTVTVNVEVVEPVALVAVNV |
| Ga0335069_120132591 | 3300032893 | Soil | PGVMAMLAAPVVAQLSVLLEPELILVGLAVKELMAGLLSGFTLTVSVDVVEPAALVAVSV |
| Ga0334837_056845_815_964 | 3300033823 | Soil | VAQLSLLLEPEAMLAGLAVKELMVGLLGVVTVTIAVDVTEPAALVAVNV |
| Ga0371487_0226629_726_878 | 3300033982 | Peat Soil | VVTQLSVLLEPEVILVGLAVKELMVGLLDVFMVTVSVDAAEPAALVAVSV |
| Ga0370487_0000022_51217_51387 | 3300034170 | Untreated Peat Soil | MLVSPVTTQLKVLLEQDTILVGLAVKELITGLPLVEFTVTVAVDVTEPAALVAVSV |
| Ga0370492_0180066_1_159 | 3300034282 | Untreated Peat Soil | APVVCQLSVLLEPEVMLVELAVNDPIVGLLAAVTVTFAVDVVEPAALVAVSV |
| Ga0370492_0226689_639_758 | 3300034282 | Untreated Peat Soil | EVILAGLAEKEVITGLLAVFTVTVSVDVVEPAALVAVSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |