Metagenome Family F104238

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F104238
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	61 residues
Representative Sequence	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALTGAVVVSGVVYFHRFFRRR
Number of Associated Samples	46
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.00 %
% of genes near scaffold ends (potentially truncated)	46.00 %
% of genes from short scaffolds (< 2000 bps)	94.00 %
Associated GOLD sequencing projects	38
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (85.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (32.000 % of family members)
Environment Ontology (ENVO)	Unclassified (51.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.64% β-sheet: 0.00% Coil/Unstructured: 37.36%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF00188	CAP	3.00
PF08238	Sel1	1.00
PF05532	CsbD	1.00
PF06411	HdeA	1.00
PF17158	MASE4	1.00
PF13630	SdpI	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	3.00
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
All Organisms	root	All Organisms	15.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
cellular organisms	root	All Organisms → cellular organisms	15.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.00 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.00 %
Idiomarinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.00 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.00 %
Pseudidiomarina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.00 %
Pseudidiomarina planktonica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina → Pseudidiomarina planktonica	1.00 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.00 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.00 %
Pseudidiomarina planktonica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina → Pseudidiomarina planktonica	1.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10130838	Not Available	1250	Open in IMG/M
3300005332\|Ga0066388_100499601	Not Available	1852	Open in IMG/M
3300005332\|Ga0066388_100573262	Not Available	1755	Open in IMG/M
3300005332\|Ga0066388_101835631	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300005332\|Ga0066388_102067988	Not Available	1023	Open in IMG/M
3300005332\|Ga0066388_102615743	Not Available	919	Open in IMG/M
3300005764\|Ga0066903_102137415	Not Available	1078	Open in IMG/M
3300005764\|Ga0066903_102195979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1064	Open in IMG/M
3300005764\|Ga0066903_103932338	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300005764\|Ga0066903_105091872	Not Available	696	Open in IMG/M
3300005764\|Ga0066903_105146914	Not Available	692	Open in IMG/M
3300005764\|Ga0066903_106050989	Not Available	633	Open in IMG/M
3300005764\|Ga0066903_108019982	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300005764\|Ga0066903_108202221	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_108860391	Not Available	510	Open in IMG/M
3300005764\|Ga0066903_108945936	Not Available	507	Open in IMG/M
3300009792\|Ga0126374_10366285	Not Available	994	Open in IMG/M
3300009792\|Ga0126374_10459348	Not Available	907	Open in IMG/M
3300009792\|Ga0126374_10753002	Not Available	739	Open in IMG/M
3300010046\|Ga0126384_10616566	Not Available	952	Open in IMG/M
3300010046\|Ga0126384_11124081	Not Available	721	Open in IMG/M
3300010048\|Ga0126373_10348545	Not Available	1492	Open in IMG/M
3300010048\|Ga0126373_10867802	Not Available	966	Open in IMG/M
3300010048\|Ga0126373_12199077	Not Available	613	Open in IMG/M
3300010358\|Ga0126370_10320768	Not Available	1238	Open in IMG/M
3300010359\|Ga0126376_10769117	Not Available	936	Open in IMG/M
3300010359\|Ga0126376_12488372	Not Available	565	Open in IMG/M
3300010360\|Ga0126372_11762687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300010360\|Ga0126372_13161399	Not Available	512	Open in IMG/M
3300010361\|Ga0126378_10106932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Pseudidiomarina → Pseudidiomarina planktonica	2774	Open in IMG/M
3300010361\|Ga0126378_11155378	Not Available	873	Open in IMG/M
3300010361\|Ga0126378_11881716	Not Available	681	Open in IMG/M
3300010361\|Ga0126378_12164873	Not Available	634	Open in IMG/M
3300010362\|Ga0126377_10941605	Not Available	928	Open in IMG/M
3300010376\|Ga0126381_100381012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1959	Open in IMG/M
3300010376\|Ga0126381_101285377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1057	Open in IMG/M
3300010376\|Ga0126381_103074372	Not Available	662	Open in IMG/M
3300010398\|Ga0126383_11204423	Not Available	847	Open in IMG/M
3300012948\|Ga0126375_11753919	Not Available	540	Open in IMG/M
3300012971\|Ga0126369_10402774	Not Available	1406	Open in IMG/M
3300012971\|Ga0126369_11919309	Not Available	681	Open in IMG/M
3300012971\|Ga0126369_12313930	Not Available	624	Open in IMG/M
3300012971\|Ga0126369_13115346	Not Available	543	Open in IMG/M
3300016270\|Ga0182036_10980269	Not Available	696	Open in IMG/M
3300016294\|Ga0182041_10998947	Not Available	756	Open in IMG/M
3300016294\|Ga0182041_12304213	Not Available	504	Open in IMG/M
3300016319\|Ga0182033_11190453	Not Available	682	Open in IMG/M
3300016319\|Ga0182033_12028218	Not Available	524	Open in IMG/M
3300016371\|Ga0182034_10575208	Not Available	948	Open in IMG/M
3300016371\|Ga0182034_10826094	Not Available	794	Open in IMG/M
3300016371\|Ga0182034_11680602	Not Available	558	Open in IMG/M
3300016387\|Ga0182040_11192598	Not Available	640	Open in IMG/M
3300016387\|Ga0182040_11781107	Not Available	527	Open in IMG/M
3300016404\|Ga0182037_11119273	Not Available	689	Open in IMG/M
3300016445\|Ga0182038_10820772	Not Available	816	Open in IMG/M
3300016445\|Ga0182038_11208173	Not Available	674	Open in IMG/M
3300021560\|Ga0126371_10026713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5371	Open in IMG/M
3300021560\|Ga0126371_10142003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2454	Open in IMG/M
3300021560\|Ga0126371_10383340	Not Available	1545	Open in IMG/M
3300021560\|Ga0126371_10616234	Not Available	1234	Open in IMG/M
3300021560\|Ga0126371_10885204	Not Available	1037	Open in IMG/M
3300027874\|Ga0209465_10370186	Not Available	718	Open in IMG/M
3300031543\|Ga0318516_10704724	Not Available	573	Open in IMG/M
3300031543\|Ga0318516_10870194	Not Available	508	Open in IMG/M
3300031545\|Ga0318541_10525381	Not Available	662	Open in IMG/M
3300031572\|Ga0318515_10690498	Not Available	540	Open in IMG/M
3300031573\|Ga0310915_10147606	Not Available	1624	Open in IMG/M
3300031573\|Ga0310915_10222862	Not Available	1323	Open in IMG/M
3300031573\|Ga0310915_10519714	Not Available	845	Open in IMG/M
3300031573\|Ga0310915_10701993	Not Available	714	Open in IMG/M
3300031736\|Ga0318501_10243762	Not Available	949	Open in IMG/M
3300031744\|Ga0306918_10303835	Not Available	1230	Open in IMG/M
3300031744\|Ga0306918_11564274	Not Available	503	Open in IMG/M
3300031770\|Ga0318521_10519524	Not Available	716	Open in IMG/M
3300031770\|Ga0318521_10538668	Not Available	703	Open in IMG/M
3300031879\|Ga0306919_10121754	Not Available	1868	Open in IMG/M
3300031880\|Ga0318544_10191476	Not Available	789	Open in IMG/M
3300031890\|Ga0306925_10546568	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300031890\|Ga0306925_10818316	Not Available	965	Open in IMG/M
3300031897\|Ga0318520_10244124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1070	Open in IMG/M
3300031910\|Ga0306923_10235082	Not Available	2096	Open in IMG/M
3300031910\|Ga0306923_11370342	Not Available	746	Open in IMG/M
3300031910\|Ga0306923_11386404	Not Available	741	Open in IMG/M
3300031912\|Ga0306921_10479072	Not Available	1448	Open in IMG/M
3300031912\|Ga0306921_11048095	Not Available	917	Open in IMG/M
3300031912\|Ga0306921_12055323	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031947\|Ga0310909_10093535	Not Available	2405	Open in IMG/M
3300031954\|Ga0306926_12141835	Not Available	624	Open in IMG/M
3300031954\|Ga0306926_12600771	Not Available	552	Open in IMG/M
3300032001\|Ga0306922_11727918	Not Available	618	Open in IMG/M
3300032041\|Ga0318549_10278333	Not Available	754	Open in IMG/M
3300032059\|Ga0318533_10227122	Not Available	1344	Open in IMG/M
3300032059\|Ga0318533_10312566	Not Available	1141	Open in IMG/M
3300032066\|Ga0318514_10753179	Not Available	518	Open in IMG/M
3300032076\|Ga0306924_12623331	Not Available	502	Open in IMG/M
3300032261\|Ga0306920_100397006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2051	Open in IMG/M
3300032261\|Ga0306920_100900466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1293	Open in IMG/M
3300032261\|Ga0306920_101754843	Not Available	877	Open in IMG/M
3300033289\|Ga0310914_10458810	Not Available	1153	Open in IMG/M
3300033289\|Ga0310914_10864325	Not Available	803	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.00%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.00%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	32.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.00%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_101308381	3300004633	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLVWALVGAVVVSGVVYLHRFFRRR*
Ga0066388_1004996014	3300005332	Tropical Forest Soil	MIQRDQLELLLAAVAGAGVGGISGIVLGHEELGTLIWALVGAVVVSGVVYFHRFFRRR*
Ga0066388_1005732621	3300005332	Tropical Forest Soil	MLERAMIQRDQLELLLAAVAGAGVGGITGIVLGREALGTLVWALIGAVVVSGIVYFHRSLRR*
Ga0066388_1018356311	3300005332	Tropical Forest Soil	MIQRDQLELLLAAVAGAGVGGITGIVLGHEELGTLSWALVGAVVVSGVVYLHRSLRR*
Ga0066388_1020679882	3300005332	Tropical Forest Soil	LELLLAAVAGAGLGGITGIVLGHEELGTLIWALAGAVVVSGMVYFHRFFRR*
Ga0066388_1026157432	3300005332	Tropical Forest Soil	MIQPDRVELLLAAIAGAVVGGVTGFFLEHERLGILIWALIGAVVVSVVVYFHRSLRR*
Ga0066903_1021374151	3300005764	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGVGGITGLVLGHEELGTLVWALVGAVVVSGVVYLHRFFRRR*
Ga0066903_1021959791	3300005764	Tropical Forest Soil	MLGQAMIQRDRLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYLHWFFRRH*
Ga0066903_1039323381	3300005764	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALGGAVVVSGIVYFHRSLRR*
Ga0066903_1050918722	3300005764	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGREELGTLIWALVGAVVVSGIVYFHRSLRR*
Ga0066903_1051469142	3300005764	Tropical Forest Soil	MIKTKIELILVALAGAGLGGITGIVLGHEELGTLIWALAGAVVVGAVFYYLRAFHQRA*
Ga0066903_1060509891	3300005764	Tropical Forest Soil	MPEASKAMIQRDQLELLLAAVAGAGVGGITGIVLGHEALGVLIWALVGAVVVSGVVYFHRSLRR*
Ga0066903_1080199821	3300005764	Tropical Forest Soil	MIQRDQLELLLAAVAGAGVGGITGIVLGHEALGILIWALIGAVVVSGVVYFHRSLRR*
Ga0066903_1082022212	3300005764	Tropical Forest Soil	GQTMIQKTQIELILVALAGAGLGGITGIVLGHEELGTLIWALAGAVVVGAVFYCLRAFRQRA*
Ga0066903_1088603911	3300005764	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALTGAVVVSGVVYFHRFFRRR*
Ga0066903_1089459362	3300005764	Tropical Forest Soil	MLGQAMIRRDRLELLLAAVAGAGLGGITGLVLGHEELGTLIWALVGAVVVSGVVYLHRFFRRR*
Ga0126374_103662851	3300009792	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALTGAVVVSGVVYFHR
Ga0126374_104593481	3300009792	Tropical Forest Soil	MLGHAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLVWAFVGSVVVSGVVY
Ga0126374_107530021	3300009792	Tropical Forest Soil	LELLLAAVAGAGLGGITGIVHEELGTLIWALIGAVVVSGMVYFHRFFRRR*
Ga0126384_106165661	3300010046	Tropical Forest Soil	MLRLAMIQPDRVELLLAAIAGAVVGGVTGFFLEHERLGILIWALIGGVVVSVVVYFHRSLRR*
Ga0126384_111240812	3300010046	Tropical Forest Soil	LYDHAEMLGRAMIQRDQLELLLAAVAGAGVGGITGIVLGHEELGTLIWALVGAVVVSGMVYLYRSFIR*
Ga0126373_103485452	3300010048	Tropical Forest Soil	MIQKTQIELILVALAGAGLGGITGIVLGHEELGTLIWTLAGAVIVSGVFYCLRAFRQRA*
Ga0126373_108678022	3300010048	Tropical Forest Soil	MLGHAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLVWALVGAVVVSGVVYLHRFFRRR*
Ga0126373_121990771	3300010048	Tropical Forest Soil	MPQMLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGVVYFYWSF
Ga0126370_103207681	3300010358	Tropical Forest Soil	MPEASKAMIQRDRLELLLAAVAGAGLGGITGIVLGHEELGTLIWALIGAVVVSGVVYFYWSFRPH*
Ga0126376_107691171	3300010359	Tropical Forest Soil	IQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLVWALVGAVVVSGVVYLHRFFRRR*
Ga0126376_124883721	3300010359	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGIPGIVLGHEELGTLIWALIGAVVVSGAFYCYRAFR*
Ga0126372_117626871	3300010360	Tropical Forest Soil	RDRLELLLAAVAGAGLGGITGIVLGHEELGTLIWALIGAVVVSGVVYFYWSFRPH*
Ga0126372_131613991	3300010360	Tropical Forest Soil	MLERAMIQRDQLELLLAAVAGAGVGGITGIVLGREALGTLVWALIGAVVVSGIVYFH
Ga0126378_101069326	3300010361	Tropical Forest Soil	MIMPMLERAMIQRDQLELLLAAVAGAGVGGITGIVLGREALGTLVWALIGAVVVSGIVYFHRSLRR*
Ga0126378_111553782	3300010361	Tropical Forest Soil	MLRLAMIQPDRVELLLAAIAGAVVGGVTGFFLEHERLGILIWALIGAVVVSLVVYFHRSLRR*
Ga0126378_118817161	3300010361	Tropical Forest Soil	HAQMLGQAMIQRDPLELLLAAVAGAGLGGITGIVLLHEELGSLIWALVGAVVVSGVVYFHRSFRRR*
Ga0126378_121648732	3300010361	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVTGLVLGHEELGTLIWALIGAVVVSGVVYLHRFFRRR*
Ga0126377_109416051	3300010362	Tropical Forest Soil	MPGQAMIQRDQLELLLAAVAGAGLGGITGIVLGREELGTLIWALVGAVVVSGVVYLHRSFSR*
Ga0126381_1003810124	3300010376	Tropical Forest Soil	MVGQAMIQRDQLELLLAAVAGAGVGGITGIVLGHEELGTLIWALVGAVVVSGVVYFHRFFRRR*
Ga0126381_1012853771	3300010376	Tropical Forest Soil	MIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALTGAVVVSGVVYFHRFFRRR*
Ga0126381_1030743721	3300010376	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGVVYFYWSFRRH*
Ga0126383_112044231	3300010398	Tropical Forest Soil	MIQPDRVELLLAAIAGAVVGGVTGFLLEHERLGILIWALIGAVVVSVVVYFHRSLRR*
Ga0126375_117539191	3300012948	Tropical Forest Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFHRFLRRR*
Ga0126369_104027741	3300012971	Tropical Forest Soil	RSPARPLYNHPQMLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGVVYFYWSFRRH*
Ga0126369_119193092	3300012971	Tropical Forest Soil	MIQRDQLELLLAAVAGAGLGGIPGIVLGHEELGTLIWALIGAVVVSGAFYCYRAFR*
Ga0126369_123139301	3300012971	Tropical Forest Soil	GQTMIQKTQIELILVALAGAGLGGITGIVLGHEELGTLIWTLAGAVVVGAVFYCLRAFRQRA*
Ga0126369_131153462	3300012971	Tropical Forest Soil	DQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALAGAVVVGAVFYCLRASRQRA*
Ga0182036_109802691	3300016270	Soil	MLGQVMIRRDRLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAAVSGVVYFYWSFRRH
Ga0182041_109989471	3300016294	Soil	LRLGQAMIQWNRIELIVAAVAGAVLGGITGIVRGHEGLGTLIWALVGAVVVSGVVYFHRFFHR
Ga0182041_123042132	3300016294	Soil	MIKTKMELILVALAGAGLGGITGLVLGHEELGTLIWALTGAVIVGAVFYWLRAFLQRA
Ga0182033_111904532	3300016319	Soil	MIQWDRIELIVAAVIGAALGGVTGVVLGHERLGILIWALFGAVVVSGVVYFYRSLRR
Ga0182033_120282181	3300016319	Soil	MIKTKIELILVALAGAGLGGITGLVLGHEELGTLIWALAGAIAVGAVFYCLRSFRQRA
Ga0182034_105752083	3300016371	Soil	MIQWDRIELIVAAVIGAALGGVTGVLLGHERLGILIWALFGAVVVSGVVYFYRSLRR
Ga0182034_108260941	3300016371	Soil	MLGQAMIRRDRLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSG
Ga0182034_116806021	3300016371	Soil	MIVPRWLGQAMIQRHRIEVIVVAVIGAVLGDITGIVLGHEWLGILIWALVGAVVVSGMVYFLRGFR
Ga0182040_111925981	3300016387	Soil	QRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALIGAVVVSGVVYLHRFFRR
Ga0182040_117811072	3300016387	Soil	DQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0182037_111192732	3300016404	Soil	IQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0182038_108207721	3300016445	Soil	MIKTELELILVALAGAGLGGITGIVLGHEELGTLIWALTGAVIVGAVFYWLRAFLQRA
Ga0182038_112081732	3300016445	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGREELGTLIWALVGAVVVSGIVYFHRSLRR
Ga0126371_100267133	3300021560	Tropical Forest Soil	MLGHAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLVWALVGAVVVSGVVYLHRFFRRR
Ga0126371_101420035	3300021560	Tropical Forest Soil	MPEASKAMIQRDQLELLLAAVAGAGVGGITGIVLGHEALGVLIWALVGAVVVSGVVYFHRSLRR
Ga0126371_103833401	3300021560	Tropical Forest Soil	MIQKTQIELILVALAGAGLGGITGIVLGHEELGTLIWTLAGAVIVSGVFYCLRAFRQRA
Ga0126371_106162341	3300021560	Tropical Forest Soil	ELILVALAGAGLGGITGIVLGHEELGTLIWALAGAVVVGAVFYCLRAFHQRA
Ga0126371_108852041	3300021560	Tropical Forest Soil	MLERAMIQRDQLELLLAAVAGAGVGGITGIVLGREALGTLVWALIGAVVVSGIVY
Ga0209465_103701861	3300027874	Tropical Forest Soil	MPEASKAMIQRDQLELLLAAVADAGVGGITGIVLGHEALGVLIWALVGAVVVSGVVYFHRSLRR
Ga0318516_107047241	3300031543	Soil	EQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRR
Ga0318516_108701942	3300031543	Soil	QMLGQAMIQRDQLELLLAAVAGAGLGGINGIVLGHEELGTLIWALIGAVVVSGVVYLHRFFRR
Ga0318541_105253811	3300031545	Soil	PLYNHAQMLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0318515_106904981	3300031572	Soil	ARPLYNHAQMLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGVVYFYWSFRRH
Ga0310915_101476064	3300031573	Soil	NMHPLYDYAEREQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0310915_102228622	3300031573	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGVVYFYWSFRRH
Ga0310915_105197141	3300031573	Soil	MIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALIGAVVVSGVVYLHRFFRR
Ga0310915_107019932	3300031573	Soil	MLGQAMIQRESLELLLAAVAGAGLGGVTGLVLGHEELGTLIWALVGAVVVSGVVYLYRSFVR
Ga0318501_102437621	3300031736	Soil	QRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0306918_103038352	3300031744	Soil	MIQWHRIELIIAAMAGAVVGIVAGKLLEHERLGILIWALIGAIAVSGVVYLHRLVGNERWTKT
Ga0306918_115642742	3300031744	Soil	MIQWDRIELIVAAVIGAALGGVTGVVLGHERLGILIWALIGAVVVSGVVYFYRSLRR
Ga0318521_105195241	3300031770	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWARVGAAVVSGVVYFYWSFRRH
Ga0318521_105386682	3300031770	Soil	MHPLYDHAEREQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0306919_101217545	3300031879	Soil	PLYDHAEREQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0318544_101914762	3300031880	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0306925_105465681	3300031890	Soil	MIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYLYRSFVR
Ga0306925_108183163	3300031890	Soil	MIQRDQLELLLAAVAGGGLGGITGIVLEHEELGTLIWALVGAVVVSGVVYLHRFFRRR
Ga0318520_102441243	3300031897	Soil	IQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALIGAVVVSGVVYLHRFFRR
Ga0306923_102350825	3300031910	Soil	YDYAEREQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0306923_113703422	3300031910	Soil	MQGYMPRMLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0306923_113864041	3300031910	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGV
Ga0306921_104790724	3300031912	Soil	MLGQAMIRRDRLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0306921_110480951	3300031912	Soil	MIRRDRLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0306921_120553231	3300031912	Soil	CLEQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYLYRSFVR
Ga0310909_100935351	3300031947	Soil	LMQGYMPRMLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0306926_121418351	3300031954	Soil	VHPLYNHVQVLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGREELGTLIWALIGAVVVSGVVYFHWSLRR
Ga0306926_126007712	3300031954	Soil	LELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0306922_117279182	3300032001	Soil	IYLNTYLKSLMQGYMPRMLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0318549_102783332	3300032041	Soil	ATPNAGRMLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGMVYFHRFFRRR
Ga0318533_102271224	3300032059	Soil	RMLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0318533_103125662	3300032059	Soil	MIQRDQLELLLAAVAGAGLGGITGIVLGREELGTLIWALVGAVVVSGIVYFHRSLRR
Ga0318514_107531792	3300032066	Soil	MLGQAMIQRDQLELLLAAVAGAGVGGITGIVLGHEELGTLIWALIGAVVVSGVVYLHRFFRR
Ga0306924_126233311	3300032076	Soil	LGQAMIRRDRLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVYFYWSLRRH
Ga0306920_1003970064	3300032261	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYRSFIR
Ga0306920_1009004661	3300032261	Soil	DQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALIGAVVVSGVVYLHRFFRR
Ga0306920_1017548433	3300032261	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGITGIVLGHEELGTLIWALVGAVVVSGVVHLHRFFRRR
Ga0310914_104588104	3300033289	Soil	AEREQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAVVVSGVVYFYWSFRRH
Ga0310914_108643251	3300033289	Soil	MLGQAMIQRDQLELLLAAVAGAGLGGVAGIVLGHEELGTLIWALVGAAVVSGVVY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104238

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences