NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F104139

Metagenome Family F104139

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104139
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 46 residues
Representative Sequence LNEVWEGVDPGSTPSGHSGTLHAPELPWVGPAFPPGAQSLLQAMT
Number of Associated Samples 12
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 5
AlphaFold2 3D model prediction Yes
3D model pTM-score0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste
(76.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(100.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.59%    β-sheet: 0.00%    Coil/Unstructured: 90.41%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.21
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00375SDF 1.00
PF00201UDPGT 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1819UDP:flavonoid glycosyltransferase YjiC, YdhE familyCarbohydrate transport and metabolism [G] 2.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Food WasteEngineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste76.00%
Food WasteEngineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste9.00%
Anaerobic Digester DigestateEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate8.00%
Food WasteEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Food Waste7.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300020816Food waste microbial community from Durham, Ontario, Canada - FW1 megahitEngineeredOpen in IMG/M
3300020817Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed1 megahitEngineeredOpen in IMG/M
3300020818Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2EngineeredOpen in IMG/M
3300021965Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed1 spadesEngineeredOpen in IMG/M
3300021966Food waste microbial community from Durham, Ontario, Canada - FW2 spadesEngineeredOpen in IMG/M
3300021971Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2 spadesEngineeredOpen in IMG/M
3300021982Food waste microbial community from Durham, Ontario, Canada - FW1 spadesEngineeredOpen in IMG/M
3300023205Combined Assembly of Gp0242100, Gp0242119EngineeredOpen in IMG/M
3300023280Combined Assembly of Gp0238881, Gp0242115EngineeredOpen in IMG/M
3300023291Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada. Combined Assembly of Gp0242115, Gp0242119EngineeredOpen in IMG/M
3300023300Food waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100EngineeredOpen in IMG/M
3300029799Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119EngineeredOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0214090_1021088023300020816Food WasteLNEVWEGVDLDSTPSSRSGALHAPDLPWVGFPPGALSLLQAMT
Ga0214090_1047009713300020816Food WasteLPTLKEGWEGVDPLSTPSSHSGTLHAPAIPWVGPAFPPGAQSLLQAVT
Ga0214090_1086401013300020816Food WasteLYCLPLNELWEGVDPGFTPSSHSDALQAPELLWIGPAFPPNVHSLFQALT
Ga0214090_1088986213300020816Food WasteHSQPLNEVWEGVEPGSTSCGHSGALHAAELLRVGPAFPPGAQSLLQAMT
Ga0214090_1129058313300020816Food WasteNEVWEGVDPGSSPSGHSAALHTPELPWVGPAFPPGASSLLQAIT
Ga0214090_1160541613300020816Food WasteARGPHLHCQPLNGVGEGVDSGSTPSGHLAAWHAPELPWVGPAFLPGVQSPFQAVT
Ga0214258_1006945313300020817Food WasteLNEVWEGVEPGFTLSSHSGALLVPEFPWVGPAFLPGAQSPVQAMT
Ga0214258_1009041723300020817Food WastePLNEVWEGVDPGSTSSGQPGTTYAPELPWVVPALLPGAQSLVQAVS
Ga0214258_1009141013300020817Food WasteHQPLNEVWEGVDPGSNPSSHSGALHAPELPWVGPAFPPGAQSLVQAVT
Ga0214258_1010754313300020817Food WasteWEGVGPGSSPPXQSGTLHAPELPWVGPATPPGAQSLLQAVT
Ga0214258_1010892513300020817Food WastePLNEIWEGVDPGSIPSSHSDALHTPELPXVGPAFPPGAQTLVQAGT
Ga0214258_1020076013300020817Food WasteTFSEVWEGVEPGSTPYSHSGTLHTPELPWVGPAFPPGAPSLLQAVT
Ga0214258_1023561513300020817Food WasteKYPCLHCQPFSDVWEGVHPGTTHSGHSGTLLAPELPWVGPAFPPDAQSLLQAMT
Ga0214258_1028963413300020817Food WasteLHCQSLNDVWEGVDPGSTPSTSHAPELPWAGLAFPSDAPSLLQAVT
Ga0214258_1029696113300020817Food WasteWEGVDPGSTPSGHSGAFHTPELLWISPAFPPGAQSLFQATT
Ga0214258_1037864113300020817Food WasteEVWEGGDPGSTPPSHSGALLTTELPWVGPAFLPGAQSLLQAIT
Ga0214258_1042016813300020817Food WastePSKRYPHLHCQHLNEVWEGMDPGSTPSSYSGTLLAPELPCVGPAFPPGAQSLLQAVT
Ga0214258_1042208723300020817Food WasteEPGPTSCGHSGTLHAAELPWVAPAFPPGAQSLGQALT
Ga0214258_1048427813300020817Food WasteVWEGVTPGSTPSGHSGTLHAPELPWVGPAFPPGAQSLLEALT
Ga0214258_1090261913300020817Food WasteNKVWEGVPPDSTPSGHSGTLHAPELPWAGPAFPPGAQSLLQAVIWHLHNN
Ga0214258_1097866613300020817Food WasteEGVDPGSIPSGHSVTLHAPELPLVGPAFPPGAQSLVQALT
Ga0214258_1099946013300020817Food WasteWEGVDPDSTPSSCSGSLRAAELPWIGPALPPGVQSLFQALT
Ga0214258_1100397813300020817Food WastePLNEVWEGVDPGSTPSAHSGTLHAPELPCVGPAFPLGAQSLVQTVTYLAFLLQ
Ga0214258_1106353013300020817Food WasteHCQHLNEVWEGVDPGSTPSSHSGALHAAELHWVGPALSPGAQSLGQAVT
Ga0214258_1115125063300020817Food WasteLNEVWEGVDLGSSPSGHSGPLHAAELPWAGPAFPPGVQSLLQAVTAFLLHI
Ga0214258_1120792313300020817Food WasteMRYLYLHYQPLNEVREGVDPGSIPSGNSGTLHAPELPCVGPAFPPGAQ
Ga0214258_1140085513300020817Food WasteQPLNEVWEGVDPGFILSNHTGTLHAAELPWVGPAFPSGAQSLFRL
Ga0214258_1141403913300020817Food WasteQPLNEVXERVDPGSTPSSQSSAMLAPELPWVGPAFPPGAQSLFQAVI
Ga0214277_1163517023300020818Food WasteVDPSSTFSGQSGTLLAPELPWVGPAFLPGAQSLLQAVTRHFHYS
Ga0227319_1008108023300021965Food WasteSHLHCQPLNKGWEGVDPGSTPSSHSGVLHTPELLWVGPAFPLGAQSLFQTLT
Ga0227319_1009898413300021965Food WastePLNEVWEGVDPGSIPSSHSDALHTPELPXVGPAFPPGAQTLVQAGT
Ga0227319_1021352913300021965Food WasteLHCQHLNEVWEGVDPGSTPSDHLGALHTPELPWVGPAFPLGAQSLFQALT
Ga0227319_1027860633300021965Food WasteMRCSHLHCQPLNEVWEGVDPGSIPSGHSGSLHTPELPWFGPAFPPGAQSLLQAVTQHF
Ga0227319_1030726613300021965Food WasteNKVWEGVAPDSTPSGHSGTLHAPELPWAGPAFPPGAQSLLQAVIWHLHNN
Ga0227319_1041061213300021965Food WastePLNEVWEGVDPGSTPSGHSGALHAPVLPWVGPAFPPGAQSLFQTMTTSMYA
Ga0227319_1047266023300021965Food WasteVWEGVYPGSTPSSHSGALHSPELTWVGPAFPPGVQSLVQAVT
Ga0227319_1057063323300021965Food WasteNEVWEGVDPGSSPSGHSGVLRAPEIPWVGPAFPPGAQSLLQALT
Ga0227319_1061721413300021965Food WasteHCQPLNEVWEGVDPGSTPSGHSGTLHAPELPWVGPALPPGAQSLLQDMT
Ga0227319_1071422123300021965Food WasteHCQPLNEVWEGGDPGSTPPSHSGALLTTELPWVGPAFLPGAQSLLQAIT
Ga0226662_1036637513300021966Food WasteNEVWEGMDPGSTPSSHSGTLLAPELPCVGPAFPPGAQSLLQAVT
Ga0227318_1010621723300021971Food WasteQPLNDVWEGVAPSFTPSSHSGALHAPELPWLGPAFPLGTQSLFQAMT
Ga0227318_1017096313300021971Food WastePLNEVWEEVNPGSTPSSHSGALLAPELPWVGPAFLPGAQSLPQAVT
Ga0227318_1021005123300021971Food WasteWEGVDPGSTPSGHSGTLHAPELPWVGPAFPPGAQSLVQAVT
Ga0227318_1022929813300021971Food WasteQPLNEVWEGMAPGPTASGHSGTLHTAELPWVGHAFPPGAQSLFQAVT
Ga0227318_1026921823300021971Food WasteLNEVWEEVDPGSTPSGHSGALHAPELFWFGPAFPPGAQSLLQAMT
Ga0227318_1059337523300021971Food WasteLNEVWEGVDPGSTPSSHSGALLAIECLWVGPAFLPGAQSLLQAVT
Ga0226661_1025338823300021982Food WasteCQPLNEAWEGVDPGSTPSGHATALHPPELLWVGPAFPPGAQSLLQAVT
Ga0226661_1036072813300021982Food WasteTLGGVNPGSIPSGHSHTLHIPELPWVGPAFPLGAQSLLQAMS
Ga0226661_1058513413300021982Food WasteVWEGVDPGSIPSGHSGTLHAPELLWVGPAFPPGVQSLLQAVTLSVRL
Ga0226661_1084590313300021982Food WasteEVREGMVPGSTPSSHSGALHTPELPWVDPAFLPGAPSLLQAVT
Ga0255814_1035369423300023205Food WastePTRHPHLHYQSLNEGWEGVDPGSTPSGHLDALHAPKLPCVGPAFPLGA
Ga0255814_1059482313300023205Food WastePTLDEVWEGVDPGFTPSSQSGALLAPELPLVDPAFPPGAQSLLQAMT
Ga0255814_1161217713300023205Food WasteLNEVWEGEDPSLTHSDHSGTLHAPELPWVGPAFPPGVLSLFQAMT
Ga0255814_1162479123300023205Food WasteCLHCQPLNKVWEGVDPGSIPSGHSDTLHAPELPWAGPAFLPGAHSLFQAVT
Ga0255814_1215786023300023205Food WasteWEGVDPGSTSSSHSGACNAPELPLVGPAFPPGAPLLVQAVT
Ga0255814_1275515013300023205Food WasteHLHCQPLKEVWEGVDSGSTPSDHLAALHAAELPWVGPAFLPGAQSLLQAMT
Ga0255814_1279478113300023205Food WasteLNEAWEGVDPGFASSSHSGALHAPELPWVGPAFLLGAQSLFQAMT
Ga0255814_1286256523300023205Food WasteLHCQPLNEIWEGVDPSSTFSGQSGTLLAPELPWVGPAFLPGAQSLLQAVTRHFHCS
Ga0255813_1008644613300023280Food WasteINEVWEGVNPGCIPSCHSGALHAPEHPWFGPAFPPGAPSLFQAVT
Ga0255813_1046121233300023280Food WasteSLFHCQPLNEVWKGVEPGSTPDSHSGTLHAPELPWVGAAFPPGAQSLLQALT
Ga0255813_1082711613300023280Food WasteHCQPLNEVWAGMDPGSTPSSHSDVLLAAELPWVGPAFPPGAQSLLQALT
Ga0255813_1096020113300023280Food WasteNEVWEGGDPGSTPPSHSGALLTTELPWVGPAFLPGAQSLLQAIT
Ga0255813_1102472133300023280Food WasteARSPCQNCQPLNEAWEGVDPGSSPSSHWVTLHAPELPWAGPAFPPAAPSLLQAVT
Ga0255813_1104721013300023280Food WasteFNEGWEGGDPGSTPSGHSGALHAPELPWVGPAFPAGVQSLVQAMT
Ga0255813_1105233713300023280Food WastePCQPFNEVWKGVEPGSTPSDHSAALHAPELPWVGPAFPPGAQPLVQAMT
Ga0255813_1135853113300023280Food WasteHCQPLQEVWKGLEPGSPPSGHSGTSHAAELPWVGTAFPPGAQSLLQAMS
Ga0255813_1141984313300023280Food WasteKPLNEVWEEVYPGSTPSSCSGALHAAELPWVGPAFPPGAPSLVQPVT
Ga0255813_1181219113300023280Food WasteMQQSPSRHLCLHCQPLNEVWEGVDPGSTSSGQPGTTYAPELPWVVPALLPGAQSLVQAVS
Ga0255813_1203721013300023280Food WasteNEVWEGVEPGSGGSSLHAPELPWVGPAFPPGAQSLVQAVT
Ga0256703_1024469723300023291Food WasteCQPLNELWEGVDPGSSPSSHSDALHTPELPWVGPAFLSGPQSLLQTVT
Ga0256703_1025467113300023291Food WasteLNEIGEGVDPGSTPSSHSGSLHTPEPSWIGSALLPGAQSLFEAVT
Ga0256703_1048303933300023291Food WasteADPEPTLSSLSGALDTAELPWVGPAFPPGAQSLLQAIT
Ga0256703_1070205213300023291Food WasteVRNSHLHCQSLNEVWEGVDPGSSPSGHSGVLRAPEIPWVGPAFPPGAQSL
Ga0256703_1072584413300023291Food WasteVWEGMKPGSTLSGHSGALHAPELPWAGPAFPPGAQSLFQAVI
Ga0256703_1072637913300023291Food WasteVWEEVYPGSTPSSCSGALHAAELPWVGPAFPPGAPSLVQPVT
Ga0256703_1081498713300023291Food WasteLPCQLLNEVWEGVDPGSTPSARSGILHAAELPWVSPAFSPGVQSLFQAIT
Ga0256703_1083377613300023291Food WasteSFHCQPLNEGWEGVYPGSTTPSHLATLHAPELPWVGPAFPPGAQSLV
Ga0256703_1086307813300023291Food WasteLNEVWEGVDPGSTPSGHSGTLHAPELPWVGPAFPPGAQSLLQAMT
Ga0256703_1100003173300023291Food WastePLNEVWEGVDPGSSPSGHSGVLLAPEIPWAGPAFPPGAQSLFQAMT
Ga0256703_1102338313300023291Food WasteYCQPLNEVWKGLDPGSPPSSHSDALHAPELPWVGPAFPPGA
Ga0256703_1116806113300023291Food WasteMRYLYLHYQPLNEVREGVDPGSIPSGNSGTLHAPELPCVGPAFPPG
Ga0256703_1120368323300023291Food WasteMNYPALLCQPSHEVWEGVDPGSIPAVHSAALHALELPSVCPAFPPGAQSLVQAMT
Ga0256703_1121750313300023291Food WasteNDVCEELDPGSTPSSHSAALHAPECPWVDPAFPPGALSLFQAMT
Ga0256703_1123786213300023291Food WasteLPTFKEVWEGLDPGSTLSGHSGALHCMHAPELPWVGPAFPLGAQSLLQAVT
Ga0256703_1129344313300023291Food WasteNEVWEGVEPGSGGSSLHAPELPWVGPAFPPGAQSLVPAVT
Ga0256703_1166109633300023291Food WasteVDPGSIPSGHSVTLHAPELPLVGPAFPPGAQSLVQALT
Ga0256703_1167439233300023291Food WasteCHPLNEVWEPGSTPSGHSGVLLAAVLRWLGPAFPPGAQSPLQTLT
Ga0256703_1169588623300023291Food WastePGSTPFGHSGTPELPWAGPNFPPGAQSLLQAVTWH
Ga0256702_1022582313300023300Food WasteVWEGVDPGSTPSSHSGVLHAAELPWAGPPFPPGAQSLFQAMT
Ga0256702_1022690113300023300Food WasteVWEGVDPGSTPSNYSGTLHAPELPWVGPAFPQGSQFLVQVVT
Ga0256702_1241549113300023300Food WasteLKEVWEGVDPGSPPSNHTGALQTPELPWVGPAFPPGAQSLLQAVT
Ga0256702_1270765413300023300Food WasteHLHCQPLNKVWEGVDPGSTPSSHSGVLHTPELLWVGPAFPLGAQSLFQTLT
Ga0311022_1071453223300029799Anaerobic Digester DigestateCPHLCCQPFNEIWEGVDPSSTPSCCSGTLLAPELPWVVSAFPPGAQSLVQALT
Ga0311022_1086137113300029799Anaerobic Digester DigestatePYLHGEPLNEVWEGVDPGSISSSHSGVLLAPELPWVGPAFLPGAQSLLQALT
Ga0311022_1087641913300029799Anaerobic Digester DigestatePGSSPSSHAGTLHAPGLSWVGPAFPPGAQSLVQALT
Ga0311022_1095124313300029799Anaerobic Digester DigestateQPLNEVWEGVDPGSTPSSHSGVLYAAELPWFGPAFPPGAQSLFQAVT
Ga0311022_1148815923300029799Anaerobic Digester DigestateEVWEGVDPASTSSSHSGASHAPELPWLGPALPPGAQSPVQAMPLHFCYALE
Ga0311022_1303560823300029799Anaerobic Digester DigestateVDPSSTFSGQSGTLLAPELPWVGPAFLPGAQSLLQAVTRHFHCS
Ga0311022_1416074413300029799Anaerobic Digester DigestatePCQPLNEIRERVEPGSISSSHSDTLLAPEQPWAGLVFPPGAQSLVQAVT
Ga0311022_1517374113300029799Anaerobic Digester DigestateIPSPLLPCQPLHEGWEGVEPASIPSSHSGALHVPEFPWIGPAFPPGTQSLLQAMT

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.