Metagenome Family F104100

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F104100
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	78 residues
Representative Sequence	LWWGDDLTVLVESDAPAAWPDGLRQRGHRVRAIRAFDPVAVGCAQIIAVEAAADGSRRLVGASDPRSPEGAAVGR
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	94.06 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (59.406 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.624 % of family members)
Environment Ontology (ENVO)	Unclassified (40.594 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.495 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.77% β-sheet: 25.24% Coil/Unstructured: 66.99%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01012	ETF	62.38
PF07690	MFS_1	12.87
PF01019	G_glu_transpept	1.98
PF12399	BCA_ABC_TP_C	0.99
PF02310	B12-binding	0.99
PF03807	F420_oxidored	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	62.38
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	62.38
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.41 %
Unclassified	root	N/A	40.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.41 %
Unclassified	root	N/A	40.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.41 %
Unclassified	root	N/A	40.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.72 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	12.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.96 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	2.97 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	12.87 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2.97 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.99 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
Deltaproteobacteria bacterium 21-66-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	12.87 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	2.97 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.98 %
Candidimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas	0.99 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
Deltaproteobacteria bacterium 21-66-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	12.87 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	2.97 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.98 %
unclassified Candidimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → unclassified Candidimonas	0.99 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.59 %
Deltaproteobacteria bacterium 21-66-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	12.87 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	2.97 %
Candidatus Frankia californiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia californiensis	1.98 %
Candidimonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → unclassified Candidimonas → Candidimonas sp.	0.99 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02G5ETF	Not Available	514	Open in IMG/M
3300001356\|JGI12269J14319_10130661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1130	Open in IMG/M
3300004080\|Ga0062385_10273445	Not Available	954	Open in IMG/M
3300004080\|Ga0062385_11072932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	544	Open in IMG/M
3300004092\|Ga0062389_101735152	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300004635\|Ga0062388_100240301	Not Available	1465	Open in IMG/M
3300004635\|Ga0062388_101469786	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300004635\|Ga0062388_101476269	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005436\|Ga0070713_101650818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	622	Open in IMG/M
3300005533\|Ga0070734_10589884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300005610\|Ga0070763_10059960	Not Available	1833	Open in IMG/M
3300005610\|Ga0070763_10840970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300006059\|Ga0075017_101045854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	637	Open in IMG/M
3300009683\|Ga0116224_10451747	Not Available	612	Open in IMG/M
3300009700\|Ga0116217_10183980	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	1380	Open in IMG/M
3300010379\|Ga0136449_100001771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	65580	Open in IMG/M
3300010379\|Ga0136449_100886922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1456	Open in IMG/M
3300010379\|Ga0136449_103525581	Not Available	595	Open in IMG/M
3300010396\|Ga0134126_11035033	Not Available	918	Open in IMG/M
3300014168\|Ga0181534_10473592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	704	Open in IMG/M
3300014169\|Ga0181531_10447222	Not Available	796	Open in IMG/M
3300014658\|Ga0181519_10515679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300014838\|Ga0182030_11066975	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	703	Open in IMG/M
3300016294\|Ga0182041_11523012	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300016319\|Ga0182033_11408267	Not Available	628	Open in IMG/M
3300016319\|Ga0182033_11609938	Not Available	587	Open in IMG/M
3300016387\|Ga0182040_10741690	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300016422\|Ga0182039_11044539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	734	Open in IMG/M
3300017955\|Ga0187817_10930834	Not Available	556	Open in IMG/M
3300018038\|Ga0187855_10817859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	543	Open in IMG/M
3300018044\|Ga0187890_10400208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300021181\|Ga0210388_10599442	Not Available	964	Open in IMG/M
3300021181\|Ga0210388_11178229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300021402\|Ga0210385_10712201	Not Available	769	Open in IMG/M
3300021404\|Ga0210389_10729287	Not Available	776	Open in IMG/M
3300021405\|Ga0210387_10723590	All Organisms → cellular organisms → Bacteria → Proteobacteria	882	Open in IMG/M
3300024220\|Ga0224568_1002059	Not Available	2152	Open in IMG/M
3300025679\|Ga0207933_1100469	All Organisms → cellular organisms → Bacteria → Proteobacteria	908	Open in IMG/M
3300027313\|Ga0207780_1007200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2524	Open in IMG/M
3300027497\|Ga0208199_1024941	Not Available	1324	Open in IMG/M
3300027662\|Ga0208565_1026955	Not Available	1993	Open in IMG/M
3300027692\|Ga0209530_1086233	Not Available	898	Open in IMG/M
3300027853\|Ga0209274_10426180	Not Available	686	Open in IMG/M
3300027884\|Ga0209275_10289107	Not Available	907	Open in IMG/M
3300028765\|Ga0302198_10239406	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	878	Open in IMG/M
3300028781\|Ga0302223_10310414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → unclassified Candidimonas → Candidimonas sp.	522	Open in IMG/M
3300028860\|Ga0302199_1251352	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	531	Open in IMG/M
3300028882\|Ga0302154_10201812	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	1010	Open in IMG/M
3300029943\|Ga0311340_10739349	Not Available	838	Open in IMG/M
3300030007\|Ga0311338_11122550	Not Available	752	Open in IMG/M
3300030520\|Ga0311372_12545824	Not Available	573	Open in IMG/M
3300030524\|Ga0311357_10524896	Not Available	1099	Open in IMG/M
3300030580\|Ga0311355_10024050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7525	Open in IMG/M
3300030580\|Ga0311355_11363370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	618	Open in IMG/M
3300030617\|Ga0311356_10545217	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	1128	Open in IMG/M
3300030706\|Ga0310039_10135004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1008	Open in IMG/M
3300031234\|Ga0302325_12114053	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300031234\|Ga0302325_12419743	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031236\|Ga0302324_100271221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2627	Open in IMG/M
3300031259\|Ga0302187_10579994	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031544\|Ga0318534_10115944	Not Available	1539	Open in IMG/M
3300031549\|Ga0318571_10361574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	559	Open in IMG/M
3300031572\|Ga0318515_10189487	Not Available	1101	Open in IMG/M
3300031679\|Ga0318561_10085636	Not Available	1638	Open in IMG/M
3300031680\|Ga0318574_10765584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300031681\|Ga0318572_10295240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300031708\|Ga0310686_108932720	Not Available	822	Open in IMG/M
3300031708\|Ga0310686_111983359	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300031724\|Ga0318500_10661664	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031736\|Ga0318501_10150298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1198	Open in IMG/M
3300031744\|Ga0306918_10749016	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300031748\|Ga0318492_10565770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300031765\|Ga0318554_10361204	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300031769\|Ga0318526_10476631	Not Available	510	Open in IMG/M
3300031771\|Ga0318546_10173752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia californiensis	1462	Open in IMG/M
3300031771\|Ga0318546_10205909	Not Available	1345	Open in IMG/M
3300031771\|Ga0318546_10920570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300031781\|Ga0318547_10182968	Not Available	1246	Open in IMG/M
3300031798\|Ga0318523_10494503	Not Available	605	Open in IMG/M
3300031805\|Ga0318497_10366979	All Organisms → cellular organisms → Bacteria → Proteobacteria	804	Open in IMG/M
3300031805\|Ga0318497_10610029	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300031805\|Ga0318497_10773266	Not Available	538	Open in IMG/M
3300031831\|Ga0318564_10233960	Not Available	816	Open in IMG/M
3300031845\|Ga0318511_10336200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	686	Open in IMG/M
3300031846\|Ga0318512_10122190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia californiensis	1239	Open in IMG/M
3300031846\|Ga0318512_10696127	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031879\|Ga0306919_10108352	Not Available	1968	Open in IMG/M
3300031910\|Ga0306923_11617861	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300031945\|Ga0310913_11312244	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	502	Open in IMG/M
3300031981\|Ga0318531_10142613	Not Available	1071	Open in IMG/M
3300032010\|Ga0318569_10470045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300032041\|Ga0318549_10538955	Not Available	524	Open in IMG/M
3300032059\|Ga0318533_10735885	Not Available	724	Open in IMG/M
3300032065\|Ga0318513_10363662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300032066\|Ga0318514_10330061	Not Available	807	Open in IMG/M
3300032068\|Ga0318553_10085950	Not Available	1590	Open in IMG/M
3300032068\|Ga0318553_10657340	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 21-66-5	548	Open in IMG/M
3300032160\|Ga0311301_11972898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300032180\|Ga0307471_100090077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2739	Open in IMG/M
3300033289\|Ga0310914_10908162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	780	Open in IMG/M
3300034163\|Ga0370515_0363789	Not Available	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.13%
Aquatic	Environmental → Aquatic	12.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.29%
Peat	Environmental → Terrestrial → Peat	14.85%
Freshwater	Environmental → Aquatic → Freshwater	11.88%
Sediment	Environmental → Aquatic → Sediment	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.38%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.88%
Loam	Environmental → Terrestrial → Soil → Loam	6.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.99%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.62%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.99%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300024220	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300027313	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028860	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_00603830	2189573000	Grass Soil	VSATRLTLDARSAGPFRLWWGDDLTVLIEADAPAEWFEGLAARGHRIQAISAFDPVAVGCAQIIAVEQRAGGEQCLVAASDPRSPEGAAVAR
JGI12269J14319_101306611	3300001356	Peatlands Soil	QDPATAIAAPRLTLDAPSAGPFRLWWGKDLTVAVESDAPPGWQHGLATRGHRVRAIRAFDPVAVGCAQIIAVHDDGEGDRRLVAASDPRSPEGAAIGR*
Ga0062385_102734452	3300004080	Bog Forest Soil	FRLWWGEDLTVLVEADAPPAWRAGLTGHGHRMRTIGAFDPVAVGCAQIIQTERAATGSRRLVGASDPRSPAGAALAR*
Ga0062385_110729321	3300004080	Bog Forest Soil	HNPASAITAPRLSLDAPSAGPFRLWWGEDLTVLVEADGPPAWPEELLLRGHRVRTIGAFDPVAVGCAQIIATERDGNGDGAGDGAGALPLLAGVSDPRSPNGAALGR*
Ga0062389_1017351522	3300004092	Bog Forest Soil	GEDLTVLVEADAPPAWRAGLTGHGHRMRTIGAFDPVAVGCAQIIQTERAATGSRRLVGASDPRSPAGAALAR*
Ga0062388_1002403011	3300004635	Bog Forest Soil	TLDAPSAGPFRLWWGEDLTVLVEADAPPAWRAGLTGHGHRMRTIGAFDPVAVGCAQIIQTERAATGSRRLVGASDPRSPAGAALAR*
Ga0062388_1014697861	3300004635	Bog Forest Soil	LPGRQDPATAITAARLALDATDAGPFRLWWGDTLTVSLEAHAPPGWKSGLEDRGHTVRSISAFDPTAVGCAQIIAVVHGNDGQRCYVGASDPRSPDGSATTR*
Ga0062388_1014762692	3300004635	Bog Forest Soil	APSAGPFRLWWGEDLTVLVEADAPPAWRADLTGHGHRVRTIGAFDPVAVGCAQIIQTERDGAGSRRLVGASDPRSPSGAALAR*
Ga0070713_1016508181	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EADAPAAWFEGLAARGHRTQAISAFDPVAVGCAQIIAVERRAGGERCLVAASDPRSPDGAAVGR*
Ga0070734_105898841	3300005533	Surface Soil	WGDDLTVLVEADAPATWFEGLAARGHRTQAISAFDPVAVGCAQIIAVERRGDGERCLVAASDPRSPEGAAVGR*
Ga0070763_100599601	3300005610	Soil	PAWFEGLAARGHRTRAISAFDPVAVGCAQIIAVERRDGGERCLVAASDPRSPEGAAVGR*
Ga0070763_108409701	3300005610	Soil	LWWGDDLTVLVESDAPAAWPDGLRQRGHRVRAIRAFDPVAVGCAQIIAVEAAADGSRRLVGASDPRSPEGAAVGR*
Ga0075017_1010458542	3300006059	Watersheds	DAPSAGPFRLWWGDDLTVVVESDAPPAWMDGLAARGHRLQRIRAFDPVAVGCAQIITVRTDRGERRQVGASDPRSPEGAAIGR*
Ga0116224_104517471	3300009683	Peatlands Soil	TAARLALDAPAAGPFRLWWGDLSVCMESHAPPRWQAGLEGRGHRVKLLSAFDPTAVGCAQIISVVGDGPDRHYVGATDPRSPEGHAATR*
Ga0116217_101839801	3300009700	Peatlands Soil	DDLTVVVESDAPPGWIDGLAARGHRMQRIRAFDPVAVGCAQIITVRTDHGTRRQVGASDPRSPEGAALGR*
Ga0136449_10000177156	3300010379	Peatlands Soil	VVEAAAPAAWHDGLTTRGHRLQRIRAFDPVAVGCAQIIEVQADGGSRRVVGASDPRSPEGAAIGR*
Ga0136449_1008869222	3300010379	Peatlands Soil	VVEAAAPAAWHDGLTTRGHRLQRIRAFDPVAVGCAQIIEVRAGGGSRRVVGASDPRSPEGAAVGR*
Ga0136449_1035255812	3300010379	Peatlands Soil	AAVSAPRLTLDAPSAGPFRLWWGDDLTVLVESDAPAAWPDGLTQRGHRVRAIRAFDPVAVGCAQIIAVEAGADGSRRLVGASDPRSPEGDAVAR*
Ga0134126_110350332	3300010396	Terrestrial Soil	TVLMEANAPGAWLEGLAGHGHRVQHIGAFDPVAVGCAQIITAEPADGALRLVGASDPRSPEGGAVAH*
Ga0181534_104735921	3300014168	Bog	AWSPGLTGHGHRVRTIGAFDPVAVGCAQIIATVRAGAGAPLLVGATDPRSPVGAALGR*
Ga0181531_104472221	3300014169	Bog	APRLTLDAPTAGPFRLWWGEDLTVLVEANAPPAWRAGLTRHGHRVRTIGAFDPVAVGCAQIIQTEREGTGSRLLVGASDPRSPAGAALGR*
Ga0181519_105156791	3300014658	Bog	LTLDAPSAGPFRLWWGEDLTVVVESDAPTGWNDGLATRGHRVRAIRAFDPVAVGCAQIVSVQGDGAGGRSLVAASDPRSPEGAAIGR*
Ga0182030_110669752	3300014838	Bog	APSAGPFRLWWGEDLTVLLEADAPPAWAAGLTGHGHRVRTIGAFDPVAVGCAQIIATARAAADTPLLVGASDPRSPAGAALGR*
Ga0182041_115230122	3300016294	Soil	EDLSVLMEAHAPAGWRPGLEALGHRVRAISAFDPVAVGCAQIVAMQREHDGGRQMVAASDPRSPEGAAVGR
Ga0182033_114082672	3300016319	Soil	VLDAPAPGPFRLWWGDDLGVVVESDAPPGWRAGLETRGHHVRPISAFDPVAVGCAQIIAVERDKSGGHRLVGASDPRSPDGGAVGR
Ga0182033_116099381	3300016319	Soil	RLWWGEDLTVLMEVHAPSAWADGLEKRGHRVRAISAFDPVAVGCAQIITVIRDADGVADHQAGASDPRSPEGAALGR
Ga0182040_107416902	3300016387	Soil	AHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0182039_110445391	3300016422	Soil	LDAPAAGPFRLWWGDDLTVLMEAHAPAGWRPGLEALGHRVQAVSAFDPVAVGCAQIIATEREPAGARRVVAASDPRSPEGAAVGR
Ga0187817_109308341	3300017955	Freshwater Sediment	LDAPSAGPFRLWWGDDLTVLVESDAPPRWPGGLADHGHRVRAIGAFDPVAVGCAQIIAVEGGAEGSRRLVGASDPRSPEGAAVGR
Ga0187855_108178591	3300018038	Peatland	ARLALDAPSAGPFRLWWGDDLTVNVESHAPSAWREGLAARGHTVRMIGAFDPVAVGCAQIIAVVDRPDGTARHYVGAADPRSPEGGTAGR
Ga0187890_104002082	3300018044	Peatland	WGEDLTVVVESDAPTGWNDGLATRGHRVRAIRAFDPVAVGCAQIVSVQGDGAGGRSLVAASDPRSPEGAAIGR
Ga0210388_105994421	3300021181	Soil	PRLTLDAPSAGPFRLWWGEDLTVLVEADAAPGWRPGLTRHGHRVRTIGAFDPVAVGCAQIIQTERDVTGSRLLVGASDPRSPAGAALGR
Ga0210388_111782292	3300021181	Soil	AAGPFRLWWGDDLTVLAEADAPAGWMEGLRQRGHRVRAIRAFDPTAVGCAQIIAVTSVAGTSHALGASDPRSPEGAAVGR
Ga0210385_107122011	3300021402	Soil	WAEGLAARGHAVRAIRAFDPVAVGCAQIIQTEREATGSRLLVGASDPRSPAGAALGR
Ga0210389_107292871	3300021404	Soil	WWGDDLTVLIEADAPAEWFQGLAARGHRTQAISAFDPVAVGCAQIIEVERGADGDRVLVAASDPRSPDGAAVGR
Ga0210387_107235901	3300021405	Soil	DAPSAGPFRLWWGEDLTVQVEADAPPRWSEGLAGLGHRVRTISAFDPVAVGCAQIIAVEPEPDPASGRRLVGASDPRSPSGGALGR
Ga0224568_10020591	3300024220	Plant Litter	AGPFRLWWGEDLTVLVEADAPPAWRAGLTRQGHRVRTIGAFDPVAVGCAQIIQTQRESTGARLLVGASDPRSPAGAALAR
Ga0207933_11004692	3300025679	Arctic Peat Soil	ARAITAPRFTLDAPSAGPFRLWWGEDLTVLVEADAPPAWPDGLTSHGHRVRTIGAFDPVAVGCAQIIATEAAAEPATGGTGPNASRRLVGASDPRSPAGAALGR
Ga0207780_10072003	3300027313	Tropical Forest Soil	DAPTPGPFRLWWGDDLCVLVESDAPPGWRAGLETRGHHVRPISAFDPVAVGCAQIIAVERDKGGGHRLVGASDPRSPDGGAVGR
Ga0208199_10249412	3300027497	Peatlands Soil	VVESDAPPTWIDGLAARGHRVQRIRAFDPVAVGCAQIITVRTDRGARRQVGASDPRSPEGAAIGR
Ga0208565_10269552	3300027662	Peatlands Soil	SAGPFRLWWGDDLTVLVESDAPAAWPDGLTQRGHRVRAIRAFDPVAVGCAQIIAVEAGADGSRRLVGASDPRSPEGDALAR
Ga0209530_10862331	3300027692	Forest Soil	ASAGPFRLWWGEDLTVLVEADAPPAWRAGLTGHGHRVRTIGAFDPVAVGCAQIIQTERDGTGSRRLVGASDPRSPAGAALAR
Ga0209274_104261801	3300027853	Soil	MSLAGNRRAGLTGHGHRVRTIGAFDPVAVGCAQIIQTERDGTGTGSRRLVGASDPRSPAGAALAR
Ga0209275_102891071	3300027884	Soil	APRLTLDAPSAGPFRLWWGDDLTVLVESDAPAAWPDGLRQRGHRVRAIRAFDPVAVGCAQIIAVEASTDGSRRLVGASDPRSPDGAAVGR
Ga0302198_102394062	3300028765	Bog	VEADAPPAWSAGLAGHGHRLRTISAFDPVAVGCAQIIATVRDGSDAPLLVGASDPRSPAGAALGR
Ga0302223_103104141	3300028781	Palsa	LLLAGQGPATAITAPRLTLDAPSAGPFRLWWGDDLTVLVEADAPPAWTTGLTRHGHRVRTIGAFDPVAVGCAQIIQTERDAAGSRLLMGASDPRSPAGAALGR
Ga0302199_12513522	3300028860	Bog	PRLALDAPSAGPFRLWWGEDLAVLVEADGPPAWTAGLTGHGHRVRTIGAFDPVAVGCAQIIATERGAAGAPLLVGASDPRSPAGAALGR
Ga0302154_102018122	3300028882	Bog	TVLVEADAPPAWSAGLAGHGHRLRTISAFDPVAVGCAQIIATVRDGSDAPLLVGASDPRSPAGAALGR
Ga0311340_107393491	3300029943	Palsa	RLWWGEDLTVLVEADAPPGWRPGLTRHGHRVRTIGACDPVAVGCAQIIQTERDATGDRLLVGASDPRSPAGAALGR
Ga0311338_111225502	3300030007	Palsa	VLVEADAPPAWTTGLTRHGHRVRTIGAFDPVAVGCAQIIQTERDAAGSRLLMGASDPRSPAGAALGR
Ga0311372_125458241	3300030520	Palsa	GLTRHGHRVRTIGAFDPVAVGCAQIIQTERDAAGSRLLMGASDPRSPAGAALGR
Ga0311357_105248962	3300030524	Palsa	LLLAGHDPATAITAPRLTLDAPSAGPFRLWWGEDLTVLVEADAPPAWRAGLTGHGHRVRTIGAFDPVAVGCAQIIETERDAAGSRLLVGASDPRSPAGAALGR
Ga0311355_1002405010	3300030580	Palsa	DLTVLVEADAPPSWREGLTRHGHRVRTISAFDPVAVGCAQIIETERDEAGDRTLVGASDPRSPAGAALGR
Ga0311355_113633701	3300030580	Palsa	HAGQSPERAITAPRFTLDAPSAGPFRFWWGEDLTVLVEADAPPAWPAWLTTHGHRVRTIGAFDPVAVGCAQIIATERSTAGPALLVGASDPRSPAGAALGR
Ga0311356_105452172	3300030617	Palsa	DAPPGWRPGLTRHGHRVRTIGAFDPVAVGCAQIIQTERDATGDRLLVGASDPRSPAGAALGR
Ga0310039_101350041	3300030706	Peatlands Soil	APPGWIDGLAERGHRVRRIRAFDPVAVGCAQVITVRTDAGTRRQVGASDPRSPEGAAIGR
Ga0302325_121140531	3300031234	Palsa	LVEADAPPAWPAGLTRHGHRVRTIGAFDPVAVGCAQIIQTERDGTGSRRLVGASDPRSPAGAALAR
Ga0302325_124197431	3300031234	Palsa	DLTVLVEANAPPAWPAGLTRHGHRVRKIGAFDPVAVGCAQIIQTERDGTGSRLLVGASDPRSPAGAALGR
Ga0302324_1002712211	3300031236	Palsa	DLTVLVEADAPPSWREGLTRHGHRVRTISAFDPVAVGCAQIIGTERDEAGDRTLVGASDPRSPAGAALGR
Ga0302187_105799942	3300031259	Bog	TLDAPSAGPFRLWWGDDLTVLVEADAPPAWSAGLAGHGHRLRTISAFDPVAVGCAQIIATVRDGSDAPLLVGASDPRSPAGAALGR
Ga0318534_101159442	3300031544	Soil	LLRAGHEPATAITAARLVLDAPSPGPFRMWWGDDLGVLVEADAPPGWRTGLEARGHRVRLIRAFDPVAVGCAQIIAAEPDPAGGQRLVGASDPRSPEGGALGR
Ga0318571_103615741	3300031549	Soil	AVSAARLALDAPAAGPFRLWWGDDLTVLMEAHAPAGWRPGLEALGHRVQAVSAFDPVAVGCAQIIATEREPAGARRVVAASDPRSPEGAAVGR
Ga0318515_101894871	3300031572	Soil	ARLVLDAPAAGPFRMWWGDDLGVLVESDAPAGWRAGLEARGHLVRPIGAFDPVAVGCAQIIAAEPDPAGGRRLVGASDPRSPEGGAIGR
Ga0318561_100856361	3300031679	Soil	PGHQHGRQRVRRPATAITAARLVLDAPAPGPFRLWWGDDLGVLVEADAPPGWRAGLETRGHHVRPISAFDPVAVGCAQIIAVERDKSGGHRLVGASDPRNPDGGAVGR
Ga0318574_107655842	3300031680	Soil	GRAGPFRLWWGDDLSVLMEAHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0318572_102952402	3300031681	Soil	GDDLSVLMEAHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0310686_1089327202	3300031708	Soil	DAPAAWPVGLTRHGHRVRTIGAFDPVAVGCAQIIRTEPDGTGSRLLVGASDPRSPAGAALGR
Ga0310686_1119833591	3300031708	Soil	EADAPPAWPAGLSTHEHRVRTIGPFDPVAVGCAQIIATEVTTEVTTGPHAGPAPSRRLVGASDPRSPSGAALGR
Ga0318500_106616642	3300031724	Soil	FRLWWGDDLTVLIEADAPSAWFEGLAARGHRTKAISAFDPVAVGCAQIIAVEQKTGGERCLVAASDPRSPEGAAVGR
Ga0318501_101502981	3300031736	Soil	AITAARLVLDAPAPGPFRLWWGDDLGVLVEADAPPGWRAGLETRGHHVRPISAFDPVAVGCAQIIAVERDKSGGHRLVGASDPRNPDGGAVGR
Ga0306918_107490161	3300031744	Soil	APAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVG
Ga0318492_105657702	3300031748	Soil	ARLALDAPSAGPFRLWWGDDLSVLMEAHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0318554_103612042	3300031765	Soil	AHAPAGWRPGLEALGHRVQAVSAFDPVAVGCAQIIATEREPDGARRVVAASDPRSPEGAAVGR
Ga0318526_104766311	3300031769	Soil	ARLVLDAPSPGPFRMWWGDDLGVLVEADAPPGWRTGLEARGHRVRLIRAFDPVAVGCAQIIAAEPDPAGGQRLVGASDPRSPEGGALGR
Ga0318546_101737522	3300031771	Soil	RLWWGEDLTVLVESDAPAGWADGLAARGHNVRAIRAFDPVAVGCAQIITVVRDAAGAADHQAGASDPRSPEGGAVGR
Ga0318546_102059092	3300031771	Soil	IEADAPSAWFEGLAARGHRTKAISAFDPVAVGCAQIIAVEQKTGGERCLVAASDPRSPEGAAVGR
Ga0318546_109205701	3300031771	Soil	VLMEAHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0318547_101829682	3300031781	Soil	LLRAGHEPATAITAARLVLDAPSPGPFRMWWGDDLGVLVEADAPPGWRTGLEARGHCVRLIRAFDPVAVGCAQIIAAEPDPAGGQRLVGASDPRSPEGGALGR
Ga0318523_104945032	3300031798	Soil	LDAPSPGPFRMWWGDDLGVLVEADAPPGWRTGLEARGHRVRLIRAFDPVAVGCAQIIAAEPDPAGGQRLVGASDPRSPEGGALGR
Ga0318497_103669791	3300031805	Soil	LTVLMEAHAPAGWRPGLEALGHRVQAVSAFDPVAVGCAQIIATEREPDGARRVVAASDPRSPEGAAVGR
Ga0318497_106100292	3300031805	Soil	WGDDLTVLIEADAPSAWFEGLAARGHRTKAISAFDPVAVGCAQIIAVEQKTGGERCLVAASDPRSPEGAAVGR
Ga0318497_107732661	3300031805	Soil	LGVLVESDAPAGWRAGLEARGHLVRPIGAFDPVAVGCAQIIAAEPDPAGGRRLVGASDPRSPEGGAIGR
Ga0318564_102339601	3300031831	Soil	WWGDDLGVLVEADAPPGWRTGLEARGHCVRLIRAFDPVAVGCAQIIAAEPDPAGGQRLVGASDPRSPEGGALGR
Ga0318511_103362001	3300031845	Soil	RLWWGDDLTVLVEAHAPDGWRPGLQELGHTVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0318512_101221901	3300031846	Soil	AWPFRLWWGEDLTVLVESDAPAGWADGLAARGHKVRAIRAFDPVAVGCAQIITVVRDAAGAADHQAGASDPRSPEGGAVGR
Ga0318512_106961271	3300031846	Soil	PGRAGPFRLWWGDDLSVLMEAHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0306919_101083521	3300031879	Soil	GWRAGLEARGHLVRPIGAFDPVAVGCAQIIAAEPDPAGGRRLVGASDPRSPEGGAIGR
Ga0306923_116178611	3300031910	Soil	WGDDLTVLMEAHAPAGWRPGLEALGHRVRAISAFDPVAVGCAQIVATQREHDGGRQMVAASDPRSPEGAAVGR
Ga0310913_113122442	3300031945	Soil	PGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0318531_101426132	3300031981	Soil	LTVLMEAHAPAGWRPGLEALGHRVQAVSAFDPVAVGCAQIIATEREPAGARRVVAASDPRSPEGAAVGR
Ga0318569_104700451	3300032010	Soil	LSVLMEAHAPAGWRPGLEERGHRVQAISAFDPVAVGCAQVIAMEHEPDGTRHMVAASDPRSPEGAAVGR
Ga0318549_105389551	3300032041	Soil	TVLIEADAPSAWFEGLAARGHRTKAISAFDPVAVGCAQIIAVEQKTGGERCLVAASDPRSPEGAAVGR
Ga0318533_107358851	3300032059	Soil	PGPFRLWWGDDLGVLVEADAPPGWRAGLETRGHHVRPISAFDPVAVGCAQIIAVERDKSGGHRLVGASDPRNPDGGAVGR
Ga0318513_103636621	3300032065	Soil	ESDAPAGWADGLAARGHNVRAIRAFDPVAVGCAQIITVVRDAAGAADHQAGASDPRSPEGGAVGR
Ga0318514_103300611	3300032066	Soil	ITAARLVLDAPTPGPFRMWWGDDLGVLVESDAPAGWRAGLEARGHLVRPIGAFDPVAVGCAQIIAAEPDPAGGRRLVGASDPRSPEGGAIGR
Ga0318553_100859501	3300032068	Soil	IEADAPSAWFEGLAARGHRTKAISAFDPVAVGCAQIIAVELKTGGERCLVAASDPRSPEGAAVGR
Ga0318553_106573402	3300032068	Soil	TVLVEAHAPAGWHPGLEELGHRVRAISAFDPVAVGCAQIIATEHETDGARHIVAASDPRSPEGAAVGR
Ga0311301_119728981	3300032160	Peatlands Soil	QDPATAVASPRLVLDAPAAGPFRLWWGDDLTVVVEAAAPPAWHDGLTTRGHRLQRIRAFDPVAVGCAQIIEVRAGGGSRRVVGASDPRSPEGAAVGR
Ga0307471_1000900771	3300032180	Hardwood Forest Soil	RLWWGDDLGVLVESDAPPSWEAGLEARGQRVRPIRAFDPVAVGCAQIIAAEPDPAGGRRLVGASDPRSPEGAAVGR
Ga0310914_109081622	3300033289	Soil	ITAARLALDAPSAGPFRLWWGDDLTVLMEAHAPAGWRPGLEALGHRVQAVSAFDPVAVGCAQIIATEREPAGARRVVAASDPRSPEGAAVGR
Ga0370515_0363789_1_222	3300034163	Untreated Peat Soil	WGDDLTVLVEADAPPSWREGLTRHGHRVRTISAFDPVAVGCAQIIETERDEAGDRTLVGASDPRSPAGAALGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104100

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences