NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104011

Metagenome Family F104011

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104011
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 50 residues
Representative Sequence MLIDGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDATLFITQAELK
Number of Associated Samples 28
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.97 %
% of genes from short scaffolds (< 2000 bps) 2.97 %
Associated GOLD sequencing projects 23
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.040 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(98.020 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.
1JGI20172J14457_100338282
2JGI20172J14457_100573991
3JGI20167J15610_100198063
4JGI20163J26743_114491613
5JGI20169J29049_105145981
6JGI20169J29049_106124901
7JGI20169J29049_108409591
8JGI20169J29049_110872022
9JGI20169J29049_111912383
10JGI20169J29049_112801411
11JGI20169J29049_113763924
12JGI20169J29049_114048113
13JGI20169J29049_114465916
14JGI20171J29575_117926572
15JGI20171J29575_122588862
16JGI20171J29575_124385521
17JGI20171J29575_125833004
18JGI24695J34938_100962882
19JGI24695J34938_102057752
20JGI24695J34938_103973592
21JGI24703J35330_108209651
22JGI24703J35330_112402402
23JGI24703J35330_114573594
24JGI24703J35330_115088092
25JGI24703J35330_116754544
26JGI24703J35330_117171276
27JGI24703J35330_117316942
28JGI24703J35330_117401786
29JGI24705J35276_114492371
30JGI24705J35276_121249014
31JGI24705J35276_121746344
32JGI24697J35500_106340471
33JGI24697J35500_107868291
34JGI24697J35500_112612943
35JGI24699J35502_108487192
36JGI24694J35173_101182382
37JGI24694J35173_101497223
38JGI24694J35173_102333163
39JGI24694J35173_103208091
40JGI24694J35173_103426472
41JGI24694J35173_103478891
42JGI24694J35173_105746132
43JGI24694J35173_106074711
44JGI24694J35173_106688361
45JGI24694J35173_107860402
46JGI24696J40584_123333351
47JGI24696J40584_126549811
48JGI24696J40584_126653701
49JGI24696J40584_128135531
50JGI24696J40584_129134592
51JGI24696J40584_129466383
52Ga0072940_13304032
53Ga0072941_15089662
54Ga0082212_104508312
55Ga0082212_105547251
56Ga0123357_1000450716
57Ga0123357_100068027
58Ga0123357_100448495
59Ga0123357_103379392
60Ga0123355_105712271
61Ga0123356_139056931
62Ga0131853_100045748
63Ga0131853_100080879
64Ga0131853_100316386
65Ga0131853_100802523
66Ga0131853_102416061
67Ga0131853_102849354
68Ga0131853_105638772
69Ga0131853_111562751
70Ga0123353_101795511
71Ga0123353_103117871
72Ga0123353_113030421
73Ga0136643_103468792
74Ga0136643_104838782
75Ga0136643_107565192
76Ga0123354_100664741
77Ga0123354_102877943
78Ga0209424_10005194
79Ga0209423_100823932
80Ga0209423_101883662
81Ga0209423_103670522
82Ga0209423_104062781
83Ga0209755_100229305
84Ga0209755_100260002
85Ga0209755_100283566
86Ga0209755_100331666
87Ga0209755_101198322
88Ga0209755_101439025
89Ga0209755_101944863
90Ga0209755_102404003
91Ga0209755_104824621
92Ga0209755_109464691
93Ga0209755_112336322
94Ga0209738_101520312
95Ga0209629_108090842
96Ga0268261_100029866
97Ga0268261_1000641511
98Ga0268261_100105571
99Ga0268261_100519884
100Ga0268261_102103283
101Ga0268261_106097101
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 25.33%    Coil/Unstructured: 74.67%
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Variant

51015202530354045MLIDGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDATLFITQAELKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
4.0%96.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Termite Gut
Termite Gut
98.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20172J14457_1003382823300001343Termite GutMLINGVNMNIKLTRIPEAFYLLAPTDDTKVRIKILD
JGI20172J14457_1005739913300001343Termite GutMLINGVDMSIKLTRTPEAFYLLAPTDDTKVRIKILDATLLITQVELKPPL
JGI20167J15610_1001980633300001542Termite GutMLINGVDLNIQLTRAPEAFYLFALSDDTKWHIKILGATLFIAQAEL*
JGI20163J26743_1144916133300002185Termite GutMLINGVDMNIKLTRAPESFYLLTPSDDANVRIKILDATLFITQVELKPPLL
JGI20169J29049_1051459813300002238Termite GutKLTRTPEAFYLLAPKDDTKVRIKILDATLFITQVELKPPFTLSSR*
JGI20169J29049_1061249013300002238Termite GutDKMLINGVDMNIKLTRTPEAFYLLAPKDDTKVCIEILDAILFITQVELKPLYS*
JGI20169J29049_1084095913300002238Termite GutMLINGVDMSIKLTRTPEAFYLLAPTDDTKVRIKILDATLLITQV
JGI20169J29049_1108720223300002238Termite GutLGVTLTRAPDAFYLLAPSDDTIVRIKILDACLFITQAELEPLILA
JGI20169J29049_1119123833300002238Termite GutMLINGVDLYIKLICTPEAFYLLAPTDDTEVRIKILYATLFTTQVK
JGI20169J29049_1128014113300002238Termite GutLINGVDMNIKLTRTPEAFYLLAPNDDTKVRIKSLDATLFITQVELKPLYS*
JGI20169J29049_1137639243300002238Termite GutMNIKLTRIPEAFYLLAPTDDTKVRIKILDATLFITQVELKPPSTLSSR*
JGI20169J29049_1140481133300002238Termite GutLLINGVDINIKLTRASESFYLLATSDDTKLRSKILDANLFITQAELNALLF*
JGI20169J29049_1144659163300002238Termite GutMLINGVDMNIKLTRAPEAFYLLAPTDDTKVRIRILDATLYYSSRNPLYY*
JGI20171J29575_1179265723300002308Termite GutNIKLTRTPEAFYLLAPKDDTKVRIKILDAILFITQVELKPLYS*
JGI20171J29575_1225888623300002308Termite GutGVDMNIKLTRTPEAFYLLAPNDDTKVRIKSLDATLFITQVELKPLYS*
JGI20171J29575_1243855213300002308Termite GutMLINGVDLYIKLICTPEAFYLLAPTDDTEVRIKILYATLFTTQVKLKTLSF*
JGI20171J29575_1258330043300002308Termite GutMLINGVDMNIKLTRTPEAFYLLAPTDDTKVRIRILDATLYYSSR
JGI24695J34938_1009628823300002450Termite GutMLINGVDMNIKLARAPDAFYLLAPLDDNKVRIKLLDATILSLRLNRSPLFYLLTLFWE*NAKLSCYTYTN*
JGI24695J34938_1020577523300002450Termite GutMLNNGVEINIKLTRASETFYLLAPSDNKVRIKILDATLFITQVEFKPLFF*
JGI24695J34938_1039735923300002450Termite GutMLINGVDMNIKLTRALDAFYLLAASDDNKVRIKILDATLFITQVELMPLFFLLTLMFWE*
JGI24703J35330_1082096513300002501Termite GutKMLINGVDMNIKLTRAPEGFYLLAPSDDNKLRIKILDATLFINQVN*
JGI24703J35330_1124024023300002501Termite GutMSIKLTRAPESFYLLAPSDDNKLRIKILDATLFINQVELK
JGI24703J35330_1145735943300002501Termite GutMLINGVDMNIELTRAPEGFYLLATSDDNKLRIKILDATLFINQDELKPP
JGI24703J35330_1150880923300002501Termite GutMLINGVDMNIKLTLHQKLSFLTTSDDTKLRIKILDATLFITHVE*
JGI24703J35330_1167545443300002501Termite GutMLINGVNMNIKITRASEAFYLLAPSDDTKLCIKILDATLL*
JGI24703J35330_1171712763300002501Termite GutMLINGVDMNIKLTRAPEVFYLLAPLYDTKLRFIILDATSFIS*
JGI24703J35330_1173169423300002501Termite GutMLINGLHMDIKLTGALEAFYLLAPSEDTKLRINILDATLSMTQV*
JGI24703J35330_1174017863300002501Termite GutMLIHGVDMNIKLTRAPESFYLLVPSDDTKLSIKILDATLFITEIELKPSSYCSC*
JGI24705J35276_1144923713300002504Termite GutMLINSIDINIKLTRAPEGFHLLAPSDDNKLRIKILDATLFINQVE
JGI24705J35276_1212490143300002504Termite GutMLINGVDMNIELTRAPEGFYLLATSDDNKLRIKILDATLFINQDEL
JGI24705J35276_1217463443300002504Termite GutNGVDMNIKLTCAPEGFYLLAPSDDNKLRITILDATLFTN*
JGI24697J35500_1063404713300002507Termite GutMLINGVDMNIKLTRAPETFYLLAPSGDIELCIKILDATVFNT
JGI24697J35500_1078682913300002507Termite GutMNIKLTRAPEAFYLLAPSDDTKVCIKILDATLFITQVELKPPLLLAHANV
JGI24697J35500_1126129433300002507Termite GutMVINGVDMNIKLTRSPVTFCLLAPSDDIKLRVKILNDILFFIQVELKPPLLAHADVWL*
JGI24699J35502_1084871923300002509Termite GutMVINGVDMNVKLTRAPEAFYLLAPSDDTKVRIKILDASLFMTEVELKPLFCLLTPMFWE*
JGI24694J35173_1011823823300002552Termite GutMLINGVDMNIKLTRAPDAFYLLAPSDDNKVRIKILDATLFITQVELKTLFFLLTLMFWE*
JGI24694J35173_1014972233300002552Termite GutMNINLHVRQIFYLLALSDDNKVRIKISDATLFIAQVELKPLF
JGI24694J35173_1023331633300002552Termite GutMLINSVDMNIKLTCAPDALYLLAPSEDNKVLIKILDATLFIIQFVLKPPLFLLTLML*
JGI24694J35173_1032080913300002552Termite GutMLINCVDMNIKFTRAPDAFYLLAPXDDNKXRIKMLDATLFITQFEL
JGI24694J35173_1034264723300002552Termite GutMNVVDMNIKLTSAPNAFYLLTLSDDNKVRIKILAATLFITQVELKATXXXCSR*
JGI24694J35173_1034788913300002552Termite GutMFSSDKMSINGVDMKIKLTRAPESFYLLAASEENMVRIKILDATLFITQVELKPLFFRLTIIF*
JGI24694J35173_1057461323300002552Termite GutMLINGVDINIXLTRAPESFYLGGPSGDNKVRIKILYDTLFITQAELKPLFF*
JGI24694J35173_1060747113300002552Termite GutMLINGVDRNIKLIRAPDAFYLLVASDDNKLRIKILDAALFITQVELKPLFFLLTLMFCE*
JGI24694J35173_1066883613300002552Termite GutMIINGVDMNIRFTRAPNAFLSLAPSDDNNVRFNNLDATLFNTQVEL*
JGI24694J35173_1078604023300002552Termite GutMLINGVDMNIKLTRAPNAIYLLAPSDNNKVGIKKLDATHFITMVELKPPLL
JGI24696J40584_1233333513300002834Termite GutMRINGVDMNIKLTRASDVFYLLANSYDNKVRIKILDATLFIAQVELKPPLLHAHANV
JGI24696J40584_1265498113300002834Termite GutVDMNIKLARAPESFCLLAPSDDNKVRIKILDATLFITQAELKPLFF*
JGI24696J40584_1266537013300002834Termite GutMLINGLDMNIKFTRAPNYFYFLVSSDNNKMRIKILDATLFITQVE
JGI24696J40584_1281355313300002834Termite GutMLINGVDMNIKLSNAPDAFYLLALLDDNKVCIKILDDTLLSLRLN*
JGI24696J40584_1291345923300002834Termite GutMLINGVDMNIKLTRGPDAFYLLTPTDNKVRIKILNATLFITQV*
JGI24696J40584_1294663833300002834Termite GutMNVVDMNIKLTSAPNAFYLLTLSDDNKVRIKILAATLFITQVELKATL
Ga0072940_133040323300005200Termite GutMLINGVDMNIQLTHASEAFYLFALSDDTKWRIKILDAQAEL*
Ga0072941_150896623300005201Termite GutMVINGVDMNIKLTCSPVTFYLLAPSDDIKLRIKILDATFSITQVELKPLFILLKLMFWV*
Ga0082212_1045083123300006045Termite GutMNIKLTRATEVFYLLAPSDNTTLRIKILDATLFITEVELKPLFFLFMLMFWE*
Ga0082212_1055472513300006045Termite GutMLINGVDMKINLTRAPEGFYLLAPLDDNKLRIKILDATLFITQV*
Ga0123357_10004507163300009784Termite GutMLINGVDMNIKLTLAPEAFYLFAPSDQSKLRIRILDASLFITQVELKPFFFLLTLMFWE*
Ga0123357_1000680273300009784Termite GutVLEITRDPEVFYILALSDDNKKRIKILDATLFITQVQWKPLFLLLTPMFWD*
Ga0123357_1004484953300009784Termite GutMNIKLTRAPEAFYLLAPSDDTKVRIKILGATLFITQIELLLLTLIFWA*
Ga0123357_1033793923300009784Termite GutMDCSMLTCLGSDKMLINGVDMNIKLTRALQALYLLAPSDDNKVRIKILNATLVITPVGLKPLFFLTLMFWE*
Ga0123355_1057122713300009826Termite GutMNGVDMNIKLTRAPETFYILALSDDDKVRIKILDATLFITQVELKPHLLL
Ga0123356_1390569313300010049Termite GutMNIKLTRASGASYLLAASDHNRVRIKILDATLFITQFE*
Ga0131853_1000457483300010162Termite GutMNIKMTRAPEAFYLFTLPDHTKERIKILDATLFTIQF*
Ga0131853_1000808793300010162Termite GutMNIKLTRAPEAFYLLSPSDDNKVRITILGSNIFITQVELKPHLFLAHANIWE*
Ga0131853_1003163863300010162Termite GutMNIKLTRATESFYLLAPSDDKRVRIKILDATLFITQVELNLPLLLAHTNV*
Ga0131853_1008025233300010162Termite GutMNIKLSRAHESFYILIPSDDNKVRIKILDATLLITQVELKHPSSISSH*
Ga0131853_1024160613300010162Termite GutMLINGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDANLFITQPN*NPLFY*
Ga0131853_1028493543300010162Termite GutMLINGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDAT
Ga0131853_1056387723300010162Termite GutMLIDGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDATLFITQAELK
Ga0131853_1115627513300010162Termite GutMLVHAVDMTIKLTRAPESFYLLALSDENKVRIKILDATLFIT
Ga0123353_1017955113300010167Termite GutMLINGADMNIKLTRAPETFYLLAPSDENKVRIKILDATLFITQAELKPPLL
Ga0123353_1031178713300010167Termite GutMQINGVDINVKLTRAPDAYFLLAPSADNKVRIDILDATLYVTQVELKP
Ga0123353_1130304213300010167Termite GutLFNSDKILIIGIDVKINLTRATESFYLLAPSGDVKLGIRILDATLFITQ
Ga0136643_1034687923300010369Termite GutMNIKLTRAPESLYLLAPSDDNKVRIKILDATLLITQAELKPLFYKLTLMF*
Ga0136643_1048387823300010369Termite GutMLIDGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDATLFITQ
Ga0136643_1075651923300010369Termite GutMLVHAVDMTIKLTRAPESFYLLALSDENKVRIKILDATLFITQAELKSPLL
Ga0123354_1006647413300010882Termite GutMLINGVDMNIKLTRAPESFYLLAPSDDNKVRIKILDATLFITQAE
Ga0123354_1028779433300010882Termite GutMNITLTRAPESFYLLAPSDDNKVRIKILDATLFITQ
Ga0209424_100051943300027539Termite GutMLINGVNMNIKLTRIPEAFYLLAPTDDTKVRIKILDATLFITQVELKPPSTLSSR
Ga0209423_1008239323300027670Termite GutMLINGVDLNIQLTRAPEAFYLFALSDDTKWHIKILGATLFIAQAEL
Ga0209423_1018836623300027670Termite GutMNIKLTRTPEAFYLLAPNDDTKVRIKSLDATLFITQVELKPLYS
Ga0209423_1036705223300027670Termite GutMLINGVDLYIKLICTPEAFYLLAPTDDTEVRIKILYATLFTTQVKLKTLSF
Ga0209423_1040627813300027670Termite GutMGGKHAVFFNSDKILINGVDMNIKLTQTPEAFYLLAPNHDTKVRIKILDATFFITQVELKPLYS
Ga0209755_1002293053300027864Termite GutMFSSDKMSINGVDMKIKLTRAPESFYLLAASEENMVRIKILDATLFITQVELKPLFFRLTIIF
Ga0209755_1002600023300027864Termite GutMLINGVDRNIKLIRAPDAFYLLVASDDNKLRIKILDAALFITQVELKPLFFLLTLMFCE
Ga0209755_1002835663300027864Termite GutMLINGLHMNIKLARAPESFYLLVPLDYNKVRIKILEAALFITQVELNPPFSSSR
Ga0209755_1003316663300027864Termite GutMLINGVDMNIKLTRALDAFYLLAASDDNKVRIKILDATLFITQVELMPLFFLLTLMFWE
Ga0209755_1011983223300027864Termite GutMLNNGVEINIKLTRASETFYLLAPSDNKVRIKILDATLFITQVEFKPLFF
Ga0209755_1014390253300027864Termite GutMLTSGVDMNIKHTRAADSFYLLAPSDDNKVLIKNLDATLFITHVELKPPFLLLTLKFYE
Ga0209755_1019448633300027864Termite GutMLVNGVDMNNKLTRAPDSFYLLAHSDDTKIRIKIVDATLFISLVELNLHLLLAHANVLE
Ga0209755_1024040033300027864Termite GutMLINGVDINNKLTRAPDASYILAPSDDNKVRIKILDATLFITQVELKPHFFLLNFTIWE
Ga0209755_1048246213300027864Termite GutMNIKLTRTPDAILFLAASDNKVLIKIXDNTLFITQVELKPLFFKFA
Ga0209755_1094646913300027864Termite GutMLINGVDMYIKITRAPDAFYLQTHSDDNEVRIKILDATSSITQVELKTPLLLAH
Ga0209755_1123363223300027864Termite GutVDINIKLTRAPESFYLGGPSGDNKVRIKILYDTLFITQAELKPLFF
Ga0209738_1015203123300027966Termite GutMLINGVDMNIKLTRTPEAFYLLAPNDDTKVRIKSLDATLFITQVELKPLYS
Ga0209629_1080908423300027984Termite GutMKIKLTRAPEYFYQLAPSDDAKVRIKIIDATLFITQVELKS
Ga0268261_1000298663300028325Termite GutMLVNVVEMNTKLTRTPEAFHLLAPNDDTKVRIKILDAILFITQVELKPLYSYLTLMF
Ga0268261_10006415113300028325Termite GutMNIKVTRAPEAFYLFAPSDDTKFRIKILDATLFITQTELKPLSS
Ga0268261_1001055713300028325Termite GutMNIKLTRTPEAFYLLAPTDDTKVRIKILDATLLITQVELKPPLLLAH
Ga0268261_1005198843300028325Termite GutMNIKLTRIPEAFYLLAPTDDTKVRIKILDATLFITQVELKPPSTLSSR
Ga0268261_1021032833300028325Termite GutMIINGVDMNIKLTRTPEAFYLLAPNDDTKVRIKILDATLFITQVELKPLFS
Ga0268261_1060971013300028325Termite GutHVDLFNSDKILINGVDMNIKLTRTPEAFYLLAPNNNIKVHIKILDATLFITQVGLKPLYS


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