Metagenome / Metatranscriptome Family F103980

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103980
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	50 residues
Representative Sequence	FGGNDSGGPESLTSEAVRLSEAGAEWANLILAGKPGAKELAEKALAAVAD
Number of Associated Samples	89
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.02 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.129 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (35.644 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.386 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.44% β-sheet: 0.00% Coil/Unstructured: 52.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02627	CMD	27.72
PF07969	Amidohydro_3	13.86
PF00449	Urease_alpha	5.94
PF00106	adh_short	3.96
PF06123	CreD	3.96
PF13594	Obsolete Pfam Family	3.96
PF12704	MacB_PCD	0.99
PF13407	Peripla_BP_4	0.99
PF13439	Glyco_transf_4	0.99
PF14499	DUF4437	0.99
PF01545	Cation_efflux	0.99
PF08327	AHSA1	0.99
PF04055	Radical_SAM	0.99
PF07238	PilZ	0.99
PF13493	DUF4118	0.99
PF13561	adh_short_C2	0.99
PF07282	OrfB_Zn_ribbon	0.99
PF07883	Cupin_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	27.72
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	27.72
COG0804	Urease alpha subunit	Amino acid transport and metabolism [E]	5.94
COG4452	Inner membrane protein CreD involved in colicin E2 resistance	Defense mechanisms [V]	3.96
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.99
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.99
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.13 %
Unclassified	root	N/A	12.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.13 %
Unclassified	root	N/A	12.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.13 %
Unclassified	root	N/A	12.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	48.51 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	21.78 %
Unclassified	root	N/A	12.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	21.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.85 %
Unclassified	root	N/A	12.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	21.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.85 %
Unclassified	root	N/A	12.87 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	21.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.85 %
Unclassified	root	N/A	12.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	21.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.85 %
Unclassified	root	N/A	12.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	21.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.85 %
Unclassified	root	N/A	12.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10126095	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	655	Open in IMG/M
3300001867\|JGI12627J18819_10378140	Not Available	574	Open in IMG/M
3300002914\|JGI25617J43924_10170568	Not Available	732	Open in IMG/M
3300004080\|Ga0062385_10167984	All Organisms → cellular organisms → Bacteria → Acidobacteria	1152	Open in IMG/M
3300004082\|Ga0062384_100291968	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1008	Open in IMG/M
3300004091\|Ga0062387_100720058	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300004092\|Ga0062389_101996248	Not Available	757	Open in IMG/M
3300004635\|Ga0062388_100077098	All Organisms → cellular organisms → Bacteria	2299	Open in IMG/M
3300005332\|Ga0066388_103928595	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	758	Open in IMG/M
3300005555\|Ga0066692_10095276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1755	Open in IMG/M
3300005555\|Ga0066692_10341506	All Organisms → cellular organisms → Bacteria → Acidobacteria	950	Open in IMG/M
3300005610\|Ga0070763_10310366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	869	Open in IMG/M
3300005610\|Ga0070763_10854415	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	540	Open in IMG/M
3300005921\|Ga0070766_10139240	All Organisms → cellular organisms → Bacteria → Acidobacteria	1475	Open in IMG/M
3300005944\|Ga0066788_10114516	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	673	Open in IMG/M
3300005995\|Ga0066790_10165212	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	947	Open in IMG/M
3300006163\|Ga0070715_10085991	All Organisms → cellular organisms → Bacteria → Acidobacteria	1437	Open in IMG/M
3300006176\|Ga0070765_101857867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	565	Open in IMG/M
3300006893\|Ga0073928_10909229	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300007265\|Ga0099794_10069372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1724	Open in IMG/M
3300007265\|Ga0099794_10196293	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300009088\|Ga0099830_10360885	All Organisms → cellular organisms → Bacteria → Acidobacteria	1170	Open in IMG/M
3300010046\|Ga0126384_11377000	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300010048\|Ga0126373_11419605	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300010359\|Ga0126376_12577624	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	557	Open in IMG/M
3300010360\|Ga0126372_10160870	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300010361\|Ga0126378_13133120	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300010376\|Ga0126381_104313055	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300011269\|Ga0137392_11044793	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300012189\|Ga0137388_11665833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	572	Open in IMG/M
3300012200\|Ga0137382_10913216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300012202\|Ga0137363_10556455	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	966	Open in IMG/M
3300012207\|Ga0137381_10018008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5549	Open in IMG/M
3300012362\|Ga0137361_10333977	All Organisms → cellular organisms → Bacteria → Acidobacteria	1390	Open in IMG/M
3300012683\|Ga0137398_10751157	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300012918\|Ga0137396_10391428	Not Available	1030	Open in IMG/M
3300012927\|Ga0137416_11481802	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300012971\|Ga0126369_10960893	All Organisms → cellular organisms → Bacteria → Acidobacteria	941	Open in IMG/M
3300012975\|Ga0134110_10022869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2422	Open in IMG/M
3300014968\|Ga0157379_12178422	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300015067\|Ga0167640_120032	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	606	Open in IMG/M
3300016270\|Ga0182036_10550404	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300016294\|Ga0182041_10521440	Not Available	1034	Open in IMG/M
3300016357\|Ga0182032_10775274	Not Available	809	Open in IMG/M
3300016387\|Ga0182040_10941003	Not Available	718	Open in IMG/M
3300016445\|Ga0182038_11728008	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300017933\|Ga0187801_10507127	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	509	Open in IMG/M
3300017943\|Ga0187819_10789261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	533	Open in IMG/M
3300018007\|Ga0187805_10085075	All Organisms → cellular organisms → Bacteria → Acidobacteria	1426	Open in IMG/M
3300018090\|Ga0187770_11798813	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300018482\|Ga0066669_11474182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300020170\|Ga0179594_10075822	All Organisms → cellular organisms → Bacteria → Acidobacteria	1178	Open in IMG/M
3300020170\|Ga0179594_10391436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	527	Open in IMG/M
3300020579\|Ga0210407_10336160	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1181	Open in IMG/M
3300020581\|Ga0210399_10001569	All Organisms → cellular organisms → Bacteria → Acidobacteria	17832	Open in IMG/M
3300021170\|Ga0210400_10945299	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300021178\|Ga0210408_11311790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300021180\|Ga0210396_10062661	All Organisms → cellular organisms → Bacteria → Acidobacteria	3392	Open in IMG/M
3300021180\|Ga0210396_11652905	Not Available	522	Open in IMG/M
3300021405\|Ga0210387_10031433	All Organisms → cellular organisms → Bacteria → Acidobacteria	4185	Open in IMG/M
3300021405\|Ga0210387_11402288	Not Available	601	Open in IMG/M
3300021477\|Ga0210398_10208177	All Organisms → cellular organisms → Bacteria → Acidobacteria	1593	Open in IMG/M
3300021479\|Ga0210410_11164242	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300022722\|Ga0242657_1118696	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	669	Open in IMG/M
3300024251\|Ga0247679_1042871	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300026335\|Ga0209804_1006057	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6793	Open in IMG/M
3300026538\|Ga0209056_10488480	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300026557\|Ga0179587_10059422	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300026557\|Ga0179587_10977844	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300027000\|Ga0207803_1004510	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2134	Open in IMG/M
3300027737\|Ga0209038_10117263	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	806	Open in IMG/M
3300027783\|Ga0209448_10066891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1208	Open in IMG/M
3300027795\|Ga0209139_10069876	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1232	Open in IMG/M
3300027795\|Ga0209139_10259075	Not Available	614	Open in IMG/M
3300027821\|Ga0209811_10086406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1113	Open in IMG/M
3300027879\|Ga0209169_10098036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1517	Open in IMG/M
3300027879\|Ga0209169_10554142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300027908\|Ga0209006_10861895	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	730	Open in IMG/M
3300028808\|Ga0302228_10376967	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300028906\|Ga0308309_11873209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300029636\|Ga0222749_10763821	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	529	Open in IMG/M
3300030617\|Ga0311356_10360906	All Organisms → cellular organisms → Bacteria → Acidobacteria	1442	Open in IMG/M
3300030743\|Ga0265461_12778432	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	584	Open in IMG/M
3300031057\|Ga0170834_104965225	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300031122\|Ga0170822_16615985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300031546\|Ga0318538_10230445	All Organisms → cellular organisms → Bacteria → Acidobacteria	993	Open in IMG/M
3300031708\|Ga0310686_100561804	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300031708\|Ga0310686_107017583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300031753\|Ga0307477_10471928	Not Available	855	Open in IMG/M
3300031823\|Ga0307478_10236437	All Organisms → cellular organisms → Bacteria → Acidobacteria	1481	Open in IMG/M
3300031823\|Ga0307478_10625276	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	901	Open in IMG/M
3300031823\|Ga0307478_10981311	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300031890\|Ga0306925_12227298	Not Available	509	Open in IMG/M
3300031962\|Ga0307479_11665772	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300032035\|Ga0310911_10796447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300032039\|Ga0318559_10132882	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300032180\|Ga0307471_100533389	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300032783\|Ga0335079_10384305	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300032805\|Ga0335078_11859221	Not Available	652	Open in IMG/M
3300033158\|Ga0335077_11313960	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300033810\|Ga0314872_026791	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.14%
Aquatic	Environmental → Aquatic	12.87%
Plants	Host-Associated → Plants	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.16%
Freshwater	Environmental → Aquatic → Freshwater	11.88%
Peat	Environmental → Terrestrial → Peat	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.36%
Loam	Environmental → Terrestrial → Soil → Loam	12.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.98%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.84%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.98%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.99%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015067	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7A, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033810	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_E	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101260951	3300001471	Forest Soil	ESLTSESVRLSQVGVEWANLVLAGKAGAKELAQKALAPVAD*
JGI12627J18819_103781401	3300001867	Forest Soil	GNSDSGGPESLTTEAVRISHAAAEWAELVLAGKPGAADLARKALTEVVY*
JGI25617J43924_101705682	3300002914	Grasslands Soil	DRIFFGNSDSGGPESLTSEAVRLSKAGSDWAELLLAGKPGARDLAEKALLAIPE*
Ga0062385_101679842	3300004080	Bog Forest Soil	PLERIYFGNADSGGPESLTSESVRLSNVAAEWSDLVLAGKPGAKDLAMKALLAAGA*
Ga0062384_1002919683	3300004082	Bog Forest Soil	FGGNDSGGPESLTSEAVRLSQVGAEWANLILAGKPGAKALAEKALAAVSD*
Ga0062387_1007200582	3300004091	Bog Forest Soil	PMERIYFGCADSSGPESLTSESVRLSKVAAEWSDLVLAGKPGARDLATKALLAAGA*
Ga0062389_1019962482	3300004092	Bog Forest Soil	FGNSDSGGPESLTSEAIRISRAAVEWANLILAGKPGAAEVAHEALNKMVL*
Ga0062388_1000770981	3300004635	Bog Forest Soil	PESLTSESVRLSRVSVEWSDLVLGGKPGAKELANKALQAAGA*
Ga0066388_1039285951	3300005332	Tropical Forest Soil	DSGGPESLTSESVRLSKVGSEWAELVLAGKPGAREIAEKALVAVAD*
Ga0066692_100952761	3300005555	Soil	TSEAVRLSKAGAEWAELVLAGKPGARELAEKALQAVPE*
Ga0066692_103415062	3300005555	Soil	RIFFGNSDSGGPESLTSEAVRISHAGVEWANLMLAGKPGAADLAHKALTEVVL*
Ga0070763_103103662	3300005610	Soil	PMDRIYFGGNDSGGPESLTSEAVRLSEVGAEWANLILAGKPGAKELAEKALAAVAD*
Ga0070763_108544152	3300005610	Soil	QPMDRIYFGGNDSGGPESLTSESVRLSQVGVEWANLILAGKPGARELAQKALAPVAD*
Ga0070766_101392401	3300005921	Soil	VRLSQVGAEWANLILAGKPSAKELAEKALAAVAD*
Ga0066788_101145162	3300005944	Soil	FGNADSGGPESLTSEAVRLSRVGVEWLNLVLAGKPGAKELAQKALAPAAD*
Ga0066790_101652123	3300005995	Soil	TSEAVRLSRVGVEWLNLVLAGKPGAKELAQKALAPAAD*
Ga0070715_100859913	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	PMERIFFANSDSGGPESLSTEAVRISRASAEWANLVLAGKSGAASELAHKALTAVVL*
Ga0070765_1018578672	3300006176	Soil	TSESVRLSQVGVEWASLVLAGKSGARELAQKALAPVAD*
Ga0073928_109092292	3300006893	Iron-Sulfur Acid Spring	GNADSGGPESLTSEAVRLSRVGVEWVDRVLAGKPGARELVEKALTPIAD*
Ga0099794_100693724	3300007265	Vadose Zone Soil	GNADSGGPESTTSEAVRLSKAGAKWAQLLLAGRPGARDSAVKALQAVPE*
Ga0099794_101962932	3300007265	Vadose Zone Soil	IFFGNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAADLAHKALTEVVL*
Ga0099830_103608851	3300009088	Vadose Zone Soil	GPESLTSEAVRLSKVGAEWAELVLAGKPGAKELAEKALAALPE*
Ga0126384_113770001	3300010046	Tropical Forest Soil	ASQPMERVFFGNSDSGGPESLTSEAIRISQAGVEWANLVLAGKPGAAELAHRALTEALF*
Ga0126373_114196052	3300010048	Tropical Forest Soil	VFFGNSDSGGPESLTTEAVRISQAAAEWAELVLAGKPGAADLAHKALRAVTF*
Ga0126376_125776242	3300010359	Tropical Forest Soil	AHSDSGGPESLTSEAVRLSKAGAEWADLVLAGKPGARALAEKTLASRLE*
Ga0126372_101608703	3300010360	Tropical Forest Soil	RVFFGNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAAELAHKALTEALL*
Ga0126378_131331202	3300010361	Tropical Forest Soil	MDRIFFGNSDSGGPESLTSEAVRISDAGVEWANLVLAGKPGAADLARKALTEAVY*
Ga0126381_1043130552	3300010376	Tropical Forest Soil	TSESVRLSQAASDWANLVLTGKSGAKELAEKAITLTSG*
Ga0137392_110447931	3300011269	Vadose Zone Soil	FGNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAGDLAHKALTEVVL*
Ga0137388_116658331	3300012189	Vadose Zone Soil	MDRIFFGNADSGGPESLTSESIRLSKSAAEWSAQVLAGNPGAKEFAQKALTTPLT*
Ga0137382_109132161	3300012200	Vadose Zone Soil	GGPESLTSEAVRLSKAGAEWAELLLAGKPGARDLAEKALLAIPD*
Ga0137363_105564551	3300012202	Vadose Zone Soil	MHRIFFGNSDSGGPESLTSEAVRLSKAGGEWAELVLAGKPGAKELVEKALQPVLD*
Ga0137381_100180081	3300012207	Vadose Zone Soil	SLTSEAVRLSRAGAEWAELLVGGKPGARDLAEKALLAIPD*
Ga0137361_103339771	3300012362	Vadose Zone Soil	PLDRIFFGNSDSGGPESLTSEAVRLSKAGAEWAELLLAGKPGARDLAEKALRAIPE*
Ga0137398_107511572	3300012683	Vadose Zone Soil	FFGNSDSGGPESLTREAVRISRAGVEWANLTLAGKPGAGDLAHKALTEVVL*
Ga0137396_103914283	3300012918	Vadose Zone Soil	SKPMDRIFFGNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAADLAHKALTEVVL*
Ga0137416_114818021	3300012927	Vadose Zone Soil	NSDSGGPESLTSEAVRLSKAGAEWAELLLAGKPGARDLAEKALRAIPE*
Ga0126369_109608932	3300012971	Tropical Forest Soil	RPLDRVFFGNSDSGGPESLTTEAVRISQPAAEWAELVLAGKPGAADLAHKALRAVTF*
Ga0134110_100228691	3300012975	Grasslands Soil	SDSGGPESLTSEAVRLSRAGAEWAELLVGGKPGARDLAEKALLAIPE*
Ga0157379_121784222	3300014968	Switchgrass Rhizosphere	DRVYFGNADSGGPESLTSEAIRLSKVGAEWLDLVLAGKPGAKALVQKALAPNAEA*
Ga0167640_1200321	3300015067	Glacier Forefield Soil	RSYFGNADSGGPESLTSEAVRLSRVGVEWLNLVLAGKPGAKELAQKALAPAAD*
Ga0182036_105504041	3300016270	Soil	SRPMDRIFFGNSDSGGPESLSSEAVRISRAAAEWANLVLAGKPGAAELAHNALTDVVL
Ga0182041_105214402	3300016294	Soil	FGNSDSGGPESLTSEAVRLSEAGAEWANLVLTGKPGAADVAHKALTRELL
Ga0182032_107752741	3300016357	Soil	NSDSGGPESLTMEAVRISHAAAEWANLVLSGKPGAAELAHQALTAVAF
Ga0182040_109410032	3300016387	Soil	FGNSDSGGPESLTTEAVRISHAAAEWVELVLAGKPGAADLARKALTEVTF
Ga0182038_117280082	3300016445	Soil	SDSGGPESLTSEAVRLSEAGAEWANLVLTGKPGAADVAHKALTRELL
Ga0187801_105071272	3300017933	Freshwater Sediment	SGGPESLTSEAVRLSRVAAEWADLVLAGKPGAKELAEKALAPTAD
Ga0187819_107892611	3300017943	Freshwater Sediment	DSGGPESLTSEAVRLSKVGTEWAELVLAGKPGAKELADKALAATIE
Ga0187805_100850751	3300018007	Freshwater Sediment	MERIFFGNADSGGPESLTSEAVRLSRVAAEWADLVLAGKPGAKELAEKALAPTAD
Ga0187770_117988132	3300018090	Tropical Peatland	RPMDRIFFGNSDSGGPESLSTEAVRISHAAAEWANLVLAGKPGPAADLAHKALTDFVF
Ga0066669_114741821	3300018482	Grasslands Soil	TSDCGGPESLTSEAGRRSRAGAEWAERLLGGKPGARDLAERALLAIPD
Ga0179594_100758222	3300020170	Vadose Zone Soil	DRIFFGNSDSGGPESVNSEAVRLSKAGGEWAELVLAGKPGAKELVEKALQPVLD
Ga0179594_103914362	3300020170	Vadose Zone Soil	DSGGPESLTSEAVRLSKAGGEWAELVLAGKPGAKELVEKALQPVLD
Ga0210407_103361601	3300020579	Soil	GNADSSGPESLTSEAIRLSKVGSEWADLVLAGKPGAEELAEKALQAVAG
Ga0210399_100015691	3300020581	Soil	ESLTSESVRLSQVGVEWANLVLAGKPGAKELAQKALAAVAD
Ga0210400_109452991	3300021170	Soil	PRDRIYFGGNDSGGPESLTSEAVRLSQVGAEWANLVLAGKSGAKELAEKALAATTE
Ga0210408_113117901	3300021178	Soil	ADSGGPESLTSESVRLSKVGAEWAGLILASKPGARELAEKALAANPE
Ga0210396_100626612	3300021180	Soil	MDRIYFGGNDSGGPESLTSEAVRLSQVGAEWVNLVLAGKPGAKELAEKALAATTE
Ga0210396_116529052	3300021180	Soil	GNSDSGGPESLSTEAVRISRAASEWADLVLAGKPGAAELAHKALTEVWF
Ga0210387_100314337	3300021405	Soil	RHADSGGPESLTSEAIRLSHVGTEWLELVLAGKPGAKELVEKALAPSAD
Ga0210387_114022882	3300021405	Soil	ESLTSESVRLSQVGVEWASLVLAGKPGAKELAQKALAPVAD
Ga0210398_102081772	3300021477	Soil	FGGNDSGGPESLTSEAVRLSEAGAEWANLILAGKPGAKELAEKALAAVAD
Ga0210410_111642421	3300021479	Soil	AMDRIYFGGNDSGGPESLTSEAIRFSQGGAEWAEMVMAGKPGAKDFADKVLNTREF
Ga0242657_11186962	3300022722	Soil	NDSGGPESLTSESVRLSQVGVEWANLILAGKPGARELAQKALAPVAD
Ga0247679_10428711	3300024251	Soil	FFGNSDSGGPESLTSEAVRISHAGVEWANLVLGGKPGAADLAHKALTEVVL
Ga0209804_10060578	3300026335	Soil	ESLTSEAVRLSKAGSEWAELLLAGKPGAKNLAEKALLAIPE
Ga0209056_104884801	3300026538	Soil	RIFFGNSDSGGPESLTSEAVRLSKAGAEWAELVLAGKPGARELAEKALQAVPE
Ga0179587_100594221	3300026557	Vadose Zone Soil	FFGNADSGGPEALTSEAVRLSKAGSEWAELLLAGKPGARELA
Ga0179587_109778442	3300026557	Vadose Zone Soil	IFFGNSDSGGPESLTSEAVRISHAAVEWANLILSGKPGAADLARQALTEVLL
Ga0207803_10045104	3300027000	Tropical Forest Soil	FFGNSDSGGPESLTTEAVRISHAAAEWAELTLAGKPGAAELAHKALTEVTF
Ga0209038_101172631	3300027737	Bog Forest Soil	DRIYFGGNDSGGPESLTSEAVRLSQVGAEWANLILAGKPGAKALAEKALAAVSD
Ga0209448_100668911	3300027783	Bog Forest Soil	PMERIFFANSDSGGPESLSTEAVRISHAAAEWANLVLAGKPGAADLAHKALTEVVL
Ga0209139_100698763	3300027795	Bog Forest Soil	DSGGPESLTSEAVRLSQVGAEWANLILAGKPGAKELAVKALAPVAD
Ga0209139_102590752	3300027795	Bog Forest Soil	NADSSGPESLTSESVRLSRVAAEWSELILAGKPGGKDLAKKALLAVSL
Ga0209811_100864062	3300027821	Surface Soil	GGPESLTSEAVRLSNLGAEWANLVLTGKPGAKELAEKALAAVAQ
Ga0209169_100980362	3300027879	Soil	SGGPESLTSEAVRLSQVGAEWANLILAGKPGAKELAEKALAATTE
Ga0209169_105541422	3300027879	Soil	RIYFGGNDSGGPESLTSEAVRLSEVGAEWASLVLAGKPGAKELAEKALAATSE
Ga0209006_108618951	3300027908	Forest Soil	MDRIYFGGNDSGGPESLTSESVRLSQVGVEWANLTLSGKPGAKELAQKALAAVPG
Ga0302228_103769672	3300028808	Palsa	PESLTSESIRLSRVAADWCGLILAGKPGGKELADKALLAATL
Ga0308309_118732092	3300028906	Soil	ESLTSEAVRLSQVGAEWANLILAGKAGAKELAEKALAAVAD
Ga0222749_107638211	3300029636	Soil	RIFFGNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAADLAHKALTEVVL
Ga0311356_103609061	3300030617	Palsa	PLDRIFFGNADSSGPESLTSESIRLSRVAADWCGLILAGKPGGKELADKALLAATL
Ga0265461_127784322	3300030743	Soil	PVERIYFGGNDSGGPESLTSESVRLSQVGVEWASLILAGKSGARELAQKALAPVAD
Ga0170834_1049652251	3300031057	Forest Soil	RIYFSNNDSGGPESLTSEAIRFSQGGVEWAEMILAGKPGAKEFAEKVLNTREF
Ga0170822_166159852	3300031122	Forest Soil	PMDRIFFGNNDSGGPESLTSEAVRISHAGVEWANLILAGKPGAADLAHKALTDVVL
Ga0318538_102304451	3300031546	Soil	LDRVFFGNSDSGGPESLTTEAVRISEAAAEWAELVLAGKPGAADLAHKALTAVTF
Ga0310686_1005618045	3300031708	Soil	GGPESLTSESVRLSQVGVEWANLILAGKPGAKELAQKALAPVAE
Ga0310686_1070175831	3300031708	Soil	SGGPESLTSEAVRLSKVGAEWSEMVLAGKPGAKELVEKALAPAAD
Ga0307477_104719283	3300031753	Hardwood Forest Soil	GNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAADLARKALTEVIL
Ga0307478_102364371	3300031823	Hardwood Forest Soil	FFGNADSGGPESLTSEAVRLSHVGTEWLEMVLAGKPGAKELVEKALAPSAD
Ga0307478_106252763	3300031823	Hardwood Forest Soil	NADSGGPESLTSEAVRLSKVGVEWADLVLAGKPGAKELVEKALAPTSD
Ga0307478_109813111	3300031823	Hardwood Forest Soil	GNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAADLARKALTEVLL
Ga0306925_122272981	3300031890	Soil	SLTSESVRLSKVGVEWADLVLAGKSGARELTEKALAPIA
Ga0307479_116657721	3300031962	Hardwood Forest Soil	GNSDSGGPESLTSEAVRISHAGVEWANLVLAGKPGAFDLAHKALTEVAL
Ga0310911_107964471	3300032035	Soil	GNSDSGGPESLTTEAVRISEAAAEWAELVLAGKPGAADLAHKALTAVTF
Ga0318559_101328823	3300032039	Soil	PLDRVFFGNSDSGGPESLTTEAVRISEAATEWAELVLAGKPGAADLAHKALTAVTF
Ga0307471_1005333891	3300032180	Hardwood Forest Soil	FANSDSGGPESLSTEAVRISHAAAEWANLVLAGKSSAASELAHKALTDVVL
Ga0335079_103843051	3300032783	Soil	NSDSGGPESLTSEAVRISQAGVEWANGVLAGKPGAAELAHKALTEAVY
Ga0335078_118592211	3300032805	Soil	ERIFFANSDSGGPESLSTEAVRISRAAAEWANLVLAGKSSAASESAHKALTEVVL
Ga0335077_113139602	3300033158	Soil	QMPRIFFGNSDSGGPESLSTEAVRISQAAVEWANLTLAGKSSAAASVAHKALTAVTF
Ga0314872_026791_362_529	3300033810	Peatland	MDRIFFGNSDSGGPESLTTEAVRISHAAAEWAELTLAGKPGAAELAHKALTEVVY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103980

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences