Metagenome / Metatranscriptome Family F103979

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103979
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	58 residues
Representative Sequence	AAVGAVALRKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLVALAVAVTH
Number of Associated Samples	92
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.00 %
% of genes near scaffold ends (potentially truncated)	93.07 %
% of genes from short scaffolds (< 2000 bps)	89.11 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.079 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (13.861 % of family members)
Environment Ontology (ENVO)	Unclassified (27.723 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.564 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.09% β-sheet: 0.00% Coil/Unstructured: 40.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF12840	HTH_20	45.54
PF08327	AHSA1	16.83
PF00144	Beta-lactamase	6.93
PF12697	Abhydrolase_6	3.96
PF00561	Abhydrolase_1	3.96
PF01243	Putative_PNPOx	3.96
PF01548	DEDD_Tnp_IS110	0.99
PF02656	DUF202	0.99
PF03706	LPG_synthase_TM	0.99
PF01694	Rhomboid	0.99
PF01022	HTH_5	0.99
PF03466	LysR_substrate	0.99
PF00685	Sulfotransfer_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	6.93
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	6.93
COG2367	Beta-lactamase class A	Defense mechanisms [V]	6.93
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.99
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.99
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.24 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	73.27 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	60.40 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	34.65 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	12.87 %
Unclassified	root	N/A	7.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	34.65 %
Unclassified	root	N/A	7.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4.95 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	34.65 %
Unclassified	root	N/A	7.92 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	1.98 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Catenulispora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	34.65 %
Unclassified	root	N/A	7.92 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1.98 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Catenulispora acidiphila DSM 44928	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	34.65 %
Unclassified	root	N/A	7.92 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1.98 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459023\|GZGNO2B01CMPGX	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	507	Open in IMG/M
2189573001\|GZR05M102IFA74	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
2199352024\|deeps__Contig_152601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2032	Open in IMG/M
3300004080\|Ga0062385_10506200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300005178\|Ga0066688_10824834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300005329\|Ga0070683_100088536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2905	Open in IMG/M
3300005330\|Ga0070690_100034373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3177	Open in IMG/M
3300005335\|Ga0070666_10743572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	721	Open in IMG/M
3300005339\|Ga0070660_100925206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300005354\|Ga0070675_100168719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1886	Open in IMG/M
3300005367\|Ga0070667_100112688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2360	Open in IMG/M
3300005434\|Ga0070709_11017906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	659	Open in IMG/M
3300005434\|Ga0070709_11260370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	595	Open in IMG/M
3300005435\|Ga0070714_101457679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	668	Open in IMG/M
3300005435\|Ga0070714_101653989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	625	Open in IMG/M
3300005436\|Ga0070713_101325944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	698	Open in IMG/M
3300005436\|Ga0070713_102123372	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005436\|Ga0070713_102448840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	504	Open in IMG/M
3300005437\|Ga0070710_11413124	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005439\|Ga0070711_100591923	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005439\|Ga0070711_102049791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	503	Open in IMG/M
3300005440\|Ga0070705_100176984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1441	Open in IMG/M
3300005456\|Ga0070678_100559030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1017	Open in IMG/M
3300005457\|Ga0070662_100793705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	805	Open in IMG/M
3300005554\|Ga0066661_10070744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2037	Open in IMG/M
3300005558\|Ga0066698_11067938	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005560\|Ga0066670_10567471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	693	Open in IMG/M
3300005616\|Ga0068852_102397792	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005718\|Ga0068866_10748435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	675	Open in IMG/M
3300005719\|Ga0068861_100547611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1054	Open in IMG/M
3300005841\|Ga0068863_100365317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1408	Open in IMG/M
3300006028\|Ga0070717_11295296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	662	Open in IMG/M
3300006028\|Ga0070717_11971386	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300006052\|Ga0075029_100810444	Not Available	638	Open in IMG/M
3300006163\|Ga0070715_10091249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1402	Open in IMG/M
3300006175\|Ga0070712_101779444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	539	Open in IMG/M
3300006854\|Ga0075425_100466775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1453	Open in IMG/M
3300006954\|Ga0079219_11117167	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009090\|Ga0099827_10475157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300009672\|Ga0116215_1044313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2026	Open in IMG/M
3300010046\|Ga0126384_11525189	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300010320\|Ga0134109_10270896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	646	Open in IMG/M
3300010359\|Ga0126376_11128611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	794	Open in IMG/M
3300010373\|Ga0134128_10440035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1455	Open in IMG/M
3300010396\|Ga0134126_13058651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	505	Open in IMG/M
3300010397\|Ga0134124_12609965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	548	Open in IMG/M
3300010880\|Ga0126350_10307300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	673	Open in IMG/M
3300010880\|Ga0126350_11203102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	790	Open in IMG/M
3300010880\|Ga0126350_12035577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1053	Open in IMG/M
3300012201\|Ga0137365_10555679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	842	Open in IMG/M
3300012359\|Ga0137385_11556684	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300012944\|Ga0137410_10687154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300012986\|Ga0164304_11794972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	513	Open in IMG/M
3300012988\|Ga0164306_12014417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	502	Open in IMG/M
3300013100\|Ga0157373_10485995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	891	Open in IMG/M
3300013105\|Ga0157369_12514084	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300014157\|Ga0134078_10425226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	601	Open in IMG/M
3300014325\|Ga0163163_11244505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	807	Open in IMG/M
3300014326\|Ga0157380_11784071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	674	Open in IMG/M
3300014968\|Ga0157379_10453465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1184	Open in IMG/M
3300015357\|Ga0134072_10229872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	657	Open in IMG/M
3300016445\|Ga0182038_10949647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	759	Open in IMG/M
3300017937\|Ga0187809_10028758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1774	Open in IMG/M
3300017937\|Ga0187809_10290063	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300017955\|Ga0187817_10217642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1217	Open in IMG/M
3300018007\|Ga0187805_10131839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	1135	Open in IMG/M
3300018043\|Ga0187887_10822840	Not Available	549	Open in IMG/M
3300020581\|Ga0210399_11409291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	544	Open in IMG/M
3300021170\|Ga0210400_10878074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	733	Open in IMG/M
3300021180\|Ga0210396_10366842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1269	Open in IMG/M
3300021401\|Ga0210393_11133003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	631	Open in IMG/M
3300021402\|Ga0210385_10944004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	663	Open in IMG/M
3300021407\|Ga0210383_11708474	All Organisms → cellular organisms → Bacteria → Terrabacteria group	515	Open in IMG/M
3300021420\|Ga0210394_11810240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	509	Open in IMG/M
3300025906\|Ga0207699_11402584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	517	Open in IMG/M
3300025931\|Ga0207644_10837820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	770	Open in IMG/M
3300026041\|Ga0207639_11810795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	571	Open in IMG/M
3300026116\|Ga0207674_10044814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4555	Open in IMG/M
3300026217\|Ga0209871_1017045	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300026551\|Ga0209648_10421181	Not Available	856	Open in IMG/M
3300026899\|Ga0209326_1004201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	1088	Open in IMG/M
3300027031\|Ga0208986_1037486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila → Catenulispora acidiphila DSM 44928	526	Open in IMG/M
3300027297\|Ga0208241_1055331	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300027497\|Ga0208199_1095705	Not Available	615	Open in IMG/M
3300027662\|Ga0208565_1065117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1140	Open in IMG/M
3300027698\|Ga0209446_1052297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1033	Open in IMG/M
3300027882\|Ga0209590_10421521	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300027898\|Ga0209067_10662687	Not Available	603	Open in IMG/M
3300028789\|Ga0302232_10642112	Not Available	521	Open in IMG/M
3300029951\|Ga0311371_10683630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1294	Open in IMG/M
3300030494\|Ga0310037_10298908	All Organisms → cellular organisms → Bacteria → Terrabacteria group	686	Open in IMG/M
3300030706\|Ga0310039_10091664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1281	Open in IMG/M
3300031170\|Ga0307498_10075003	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300031543\|Ga0318516_10024108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3148	Open in IMG/M
3300031708\|Ga0310686_114708536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6031	Open in IMG/M
3300031715\|Ga0307476_11428012	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503	Open in IMG/M
3300032089\|Ga0318525_10099254	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300032783\|Ga0335079_10779233	Not Available	992	Open in IMG/M
3300032805\|Ga0335078_10912880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1053	Open in IMG/M
3300032892\|Ga0335081_10070331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5356	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.19%
Host-Associated	Host-Associated	18.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.28%
Plants	Host-Associated → Plants	18.81%
Aquatic	Environmental → Aquatic	8.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.89%
Freshwater	Environmental → Aquatic → Freshwater	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.93%
Sediment	Environmental → Aquatic → Sediment	1.98%
Peat	Environmental → Terrestrial → Peat	1.98%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.54%
Loam	Environmental → Terrestrial → Soil → Loam	20.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026899	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA3_01885520	2170459023	Grass Soil	AVGAVALKKDVIAGLLIIATVPVIWRLGRIAHHRPGRLRLVTATIVAVSVVALVVALID
FD2_09035730	2189573001	Grass Soil	VTLKKDVVAGLLILATAPVIWRLGRLAHHRPGPASRLVTATIVAVALVA
deeps_02803530	2199352024	Soil	VVLRKDVIAGLLILATAPVIWRVGHLDYHRPGRLRLVTATIVAVSLVALVVAVTH
Ga0062385_105062002	3300004080	Bog Forest Soil	WTRTALSFAAVGGVVLKKDILAGLIILTAVPVIWWLGRLPHDRPGRLKLVTATIVVISLVALVVSVTR*
Ga0066688_108248341	3300005178	Soil	LRKDVIAGLLIIAAVPVIWRLGRLAHHQPGRLRLVTATIVAVSLVALVVALTH*
Ga0070683_1000885366	3300005329	Corn Rhizosphere	VAGLLILATAPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0070690_1000343736	3300005330	Switchgrass Rhizosphere	RKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0070666_107435722	3300005335	Switchgrass Rhizosphere	RKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLVALAVAVTH*
Ga0070660_1009252062	3300005339	Corn Rhizosphere	LAWTRTALSFAAVGAVALRKDVIAGLLILATVPVIWWLGRLTHHFRGRIRLVTATIVIVSLVALVVAVTR*
Ga0070675_1001687194	3300005354	Miscanthus Rhizosphere	AGLLILATAPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0070667_1001126881	3300005367	Switchgrass Rhizosphere	TALSFAAVGAVALRKDVIAGLLILATVPVIWWLGRLTHHFRGRIRLVTATIVIVSLVALVVAVTR*
Ga0070709_110179061	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LSFAAVGAVALRKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0070709_112603701	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VIAGLLILATVPVIWWLGRLTHHFRGRIRLVTATIVIVSLVALVVAVTR*
Ga0070714_1014576791	3300005435	Agricultural Soil	LSFAAVGAVALRKDVIAGLLILATAPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0070714_1016539891	3300005435	Agricultural Soil	RTALSFAAVGAVALRKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLIALAVAVTP*
Ga0070713_1013259441	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	IAGLLIIATAPAIWRLGRISHHLPGRLRLVTATIVAVSVVALVVALIH*
Ga0070713_1021233721	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RTALSFAAVGGVVLKQDLIPGLLIMATAPAVWELGRLAHHRPGRLRLVTATIVAVAIVALAIALIR*
Ga0070713_1024488401	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VLRKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLVALAVAVTH*
Ga0070710_114131241	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	WTRTALSFAAVGGVVLKQDLIPGLLIMATAPAVWELGRLAHHRPGRLRLVTATIVAVAIVALAIALIR*
Ga0070711_1005919231	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VLKEDLIPGLLIMAAAPVIWQLGRLDHHLPSRLRLVTATIVVVALVALAVAVAG*
Ga0070711_1020497912	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVAVSLVTLAVAVTH*
Ga0070705_1001769841	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VIAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0070678_1005590301	3300005456	Miscanthus Rhizosphere	KDVIAGLLILATVPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0070662_1007937053	3300005457	Corn Rhizosphere	VALRKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0066661_100707444	3300005554	Soil	AAVGAVTLKKDVIAGLLIIAAAPVIWRLGRLAYHLPGRLRLVTATIVAVSLVALVVALTH
Ga0066698_110679381	3300005558	Soil	DVIAGLLIMATAPVIWRLGRLDHHRPGRLRLVTASIVAVSLVALIIAVTH*
Ga0066670_105674712	3300005560	Soil	ALSFAAVGGVALRKDVIAGLLIIATAPVIWRLGRLAHHRPGRLMLVTAAIVAVAIVALVVALTH*
Ga0068852_1023977921	3300005616	Corn Rhizosphere	TALSFAAVGGVVLKQDLIPGLLIMAAAPAVWQLGRLAYHRPGRLRLVTATIVAVAIAALAVTLIH*
Ga0068866_107484351	3300005718	Miscanthus Rhizosphere	ALSFAAVGAVALRKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0068861_1005476113	3300005719	Switchgrass Rhizosphere	AGLVIMAAAPVIWRLGRLAHHRPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0068863_1003653173	3300005841	Switchgrass Rhizosphere	DLIPGLLIMAAAPVIWELGRLDHHLPGRLRLVTATIVVVALVALAVAVAG*
Ga0070717_112952962	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RTALSFAAVGAVALRKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLVALAVAVTH*
Ga0070717_119713862	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DLIPGLLIMATAPAVWELGRLAHHRPGRLRLVTATIVAVAIVALAIALIR*
Ga0075029_1008104442	3300006052	Watersheds	TRTALSFAAVGGVVLKKDVIVGLIILAAVPVVWQLGRLAQDHPGRLKLVTATIVVISLVALAVALTH*
Ga0070715_100912491	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	AVALRKDVIAGLLILATAPVIWRLGRLAHHLPGRIRLVTATIVAVSLVALAVALTH*
Ga0070712_1017794442	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AAVGAVALRKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLVALAVAVTH
Ga0075425_1004667751	3300006854	Populus Rhizosphere	ALSFAAVGAVALRKDVIAGLLILAAAPVIWRLGRLDHHLPGRIRLVTVTIVAVSLVALAVAVTR*
Ga0079219_111171672	3300006954	Agricultural Soil	QDLIPGLLIMAAAPAVWQLGRLAHHHPGRLRLVTATIVAVAMVALAITVIR*
Ga0099827_104751571	3300009090	Vadose Zone Soil	LSFAAVGGVVLKKDVIAGLIILSATPVIWKLGRLAHQRPGRLKLVTVTIVAVSLVALAVAVTS*
Ga0116215_10443132	3300009672	Peatlands Soil	GVVLKKDVVVGLIILAVAPVIWRLGRLADDRPGRLKLVTATIVIIALVALAVVVTH*
Ga0126384_115251891	3300010046	Tropical Forest Soil	ISFAAVGGVVLKKDIVPGLVILAAAPVIWRLGLLTQRRPARLRLVTVTIVAVAVVALVVALTG*
Ga0134109_102708962	3300010320	Grasslands Soil	VALRKDVIAGLLILATAPVIWRLGRLNHHLPGRIRLVTATIVAVSLVALVIAVTH*
Ga0126376_111286112	3300010359	Tropical Forest Soil	MPATLGRIAGKDVVAGLLIMAIAPVIWRLGGLAYHHPARLRLVTAAIVAVAAVALVVAVTT*
Ga0134128_104400353	3300010373	Terrestrial Soil	IPGLLIMAAAPVIWQLGRLAHHLPGRLRLVTATIVVVALVALAVAVAG*
Ga0134126_130586512	3300010396	Terrestrial Soil	IAGLLILATAPVIWWLGRLAHHLPGRIRLVTATIVVVSLVALAVAVTH*
Ga0134124_126099652	3300010397	Terrestrial Soil	LRKDVIAGLLILATAPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0126361_110913001	3300010876	Boreal Forest Soil	AGLVIMGLVPVVWQLGRLPHHLPGRLQLITASIVAVALVALIVAATH*
Ga0126350_103073001	3300010880	Boreal Forest Soil	VVLRKDLIPGLIIMCLVPAVWRLGRLDHHRPGRLQLVTATIVAVALAALAVAFTS*
Ga0126350_112031022	3300010880	Boreal Forest Soil	MAWTRTALSFAAVGGVTLKNDVLAGLVIMGLGPVVWQLGRLPHHLPGRLQLITASIVAVALVALIVAATH*
Ga0126350_120355771	3300010880	Boreal Forest Soil	TRTALSFAAVGGVTLKNDVLAGLVIMGLVPVVWQLGRLAHHLPGRLQLITASIVAVALVALIVAATH*
Ga0137365_105556793	3300012201	Vadose Zone Soil	FAAVGAVTLRKDVIAGLLIIAAAPVVWRLGRLAHHRPGRLRLVTATIVAVSLVALAVAVIH*
Ga0137385_115566842	3300012359	Vadose Zone Soil	AAVGGVVLKKDVIVGLVIMAAAPVVWRLGHLAHRRPDRLKLVTAAIVAVALGALVVAVTH
Ga0137410_106871543	3300012944	Vadose Zone Soil	FAAVGAVTLKKDVIAGLLIIAVAPVIWRLGRLAHHRPGRLRLVTATIVAVSLVTLAVALTH*
Ga0164304_117949721	3300012986	Soil	ALSFAAVGAVALRKDVIAGLLILATAPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0164306_120144171	3300012988	Soil	IIAGLLILAAAPVIWRLGRLDHHLPGRIRLVTATIVAVALVSLVVAVTH*
Ga0157373_104859953	3300013100	Corn Rhizosphere	AGLLILAPAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0157369_125140842	3300013105	Corn Rhizosphere	VLKEHLIPGLLIMAAAPVIWQLGRLAHHLPGRLRLVTATIVVVALVALAVAVAG*
Ga0134078_104252261	3300014157	Grasslands Soil	ALSFAAVGAVALRKDIIAGLLILATAPVIWRLGRLNHHLPGRIRLVTATIVAVAIVALVVALTH*
Ga0163163_112445051	3300014325	Switchgrass Rhizosphere	RTALSFAAVGAVALRKDVIAGLLILATVPVIWWLGRLTHHFRGRIRLVTATIVIVSLVALVVAVTR*
Ga0157380_117840711	3300014326	Switchgrass Rhizosphere	RTALSFAAVGAVALRKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ*
Ga0157379_104534653	3300014968	Switchgrass Rhizosphere	AVGAVALRKDVIAGLLILATAPVIWWLGRLAHHHPGRIRLVTAMIVVVSLVALAVAVTR*
Ga0134072_102298721	3300015357	Grasslands Soil	IIAGLLILATAPVIWRLGRLNHHLPGRIRLVTATIVAVSLVALAVVVTH*
Ga0182038_109496472	3300016445	Soil	SFAAVGAVTLKEDVIPGLLIMATALVIWRIGPLAYHHPARLRLVTIAIVAVAAVALGVALTH
Ga0187809_100287581	3300017937	Freshwater Sediment	FAAVGAVVLRKDVIAGLLILATAPVIWWLGRLAHHLPGRIRLVTVTIVAVSLVALVVALT
Ga0187809_102900631	3300017937	Freshwater Sediment	RTALSFAAVGGVVLKQDLIPGLLIMATAPVVWELGRLAHHRPSRLRLVTATIVAVAIAALAVTLIH
Ga0187817_102176424	3300017955	Freshwater Sediment	KKDVIAGLIILAAVPVIWWLGRLPHDRPGRLKLVTATILAISLAALAVALIH
Ga0187805_101318394	3300018007	Freshwater Sediment	GLIILAAVPVIWWLGRLPHDRPGRLKLVTATILAISLAALAVALIH
Ga0187887_108228402	3300018043	Peatland	LRKDVIAGLVIMCVAPVVWQLGRLPHHLPGRLQLITATIVAVALMALIVAVTY
Ga0210399_114092912	3300020581	Soil	LKKDVIAGLLILATVPVIWRLGRLAHHRPGRLRLVTATIVAVSVVALVVALID
Ga0210400_108780741	3300021170	Soil	GAVTLKKDVIAGLLIIAVAPVIWRLGRLAYHLPGRLRLVTATIVAVSLVALAVALTH
Ga0210396_103668421	3300021180	Soil	LSFAAVGAVTLKKDIIAGLLIIAAAPAIWRLGRLAHHLPGRLRLVTATIVAVSVVALVVAVTH
Ga0210393_111330031	3300021401	Soil	ALSFAAVGAVVLRKDVIAGLLILTTAPVIWWLGRLAHHLPGRIRLVTATIVAVSLVALAVAVTH
Ga0210385_109440041	3300021402	Soil	LKKDVIAGLIIIAAAPVIWQLGQLDHHRPGRLKLVTATIVAVAAVALAVALAH
Ga0210383_117084742	3300021407	Soil	FAAVGVVVLKKDVIAGLIIIAAAPVIWQLGQLDHHRPGRLKLVTATIVAVSLVSLAVVLA
Ga0210394_118102402	3300021420	Soil	AVGAVTLRKDVIAGLLIIATAPVIWRLGRLAHHRPGRLRLVTATIVAVSLVALAVALTH
Ga0207699_114025841	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VIAGLLILATVPVIWWLGRLTHHFRGRIRLVTATIVIVSLVALVVAVTR
Ga0207644_108378201	3300025931	Switchgrass Rhizosphere	WTRTALSFAAVGAVALRKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALVVAVTR
Ga0207639_118107952	3300026041	Corn Rhizosphere	WTRTALSFAAVGAVALRKDVVAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ
Ga0207674_100448141	3300026116	Corn Rhizosphere	KDVIAGLLILATAPVIWWIGRLAHRLPGRIRLVTATIVIVSLVALAVAVTQ
Ga0209871_10170454	3300026217	Permafrost Soil	LRKDLIPGLILMCVVPAVWQLGRLDHQLPGRLQLVTATIVAVALVALVIALTS
Ga0209648_104211812	3300026551	Grasslands Soil	GGVVLKKDVITGLVILATAPVIWQVGRVAHDLRGRLKLVTATIVAVSLVALAVAVTH
Ga0209326_10042013	3300026899	Forest Soil	SPGMTNVTAGLVIMAAAPVIWRLGRLDHHVPGRIRLVTATIVIVSLVALVVAVTR
Ga0208986_10374862	3300027031	Forest Soil	SFAAVGAVALRKDVIAGLLILATAPVIWWLGRLAYHLPGRIRLVTATIVAVSLVALAVAVTH
Ga0208241_10553312	3300027297	Forest Soil	WTRTALSFAAVGVVVLRKDIVAGLIILAVAPVIWRLGHLTHHRPGRLKLVTATIVAIALVALVVAVTH
Ga0208199_10957052	3300027497	Peatlands Soil	IVGLIILAAVPVVWQLGRLAQDHPGRLKLVTATIVAISLVALVVSVTH
Ga0208565_10651173	3300027662	Peatlands Soil	RTALSFAAVGGVVLKKDLIVGLIIMAATPVIWQLGRLAYGRPDRLKVVTATIVAISLVALAVAVTH
Ga0209446_10522973	3300027698	Bog Forest Soil	GLLCLTVAAAAVGGVVLKKDILAGLIILTAVPVIWWLGRLPHDRPGRLKLVTATIVVISLVALVVSVTR
Ga0209590_104215212	3300027882	Vadose Zone Soil	LSFAAVGGVVLKKDVIAGLIILSATPVIWKLGRLAHQRPGRLKLVTVTIVAVSLVALAVAVTS
Ga0209067_106626872	3300027898	Watersheds	ADGGVVLKKDVIVGLIILAAVPVVWQLGRLAQDHPGRLKLVTATIVVISLVALAVALTH
Ga0302232_106421122	3300028789	Palsa	MAWTRTALSFAAVGVVVLKKDVVPGLIILCAAPVTWQLGRLAHRLRGRLELVTGTIVAVALAALIVAITH
Ga0311371_106836303	3300029951	Palsa	MAWTRTALSFAAVGVVVLKKDVVPGLIILCAAPVTWQLGRLAHRLRGRLELVTGTIVAVALAALI
Ga0310037_102989082	3300030494	Peatlands Soil	GGVVLKKDIIAGLIILTAVPVIWWLGRLPYDRPGRLKLVTATILAISLAALAVALIH
Ga0310039_100916641	3300030706	Peatlands Soil	AAVGGVVLKRDVIAGLVIMAAAPVIWQLGRLAYDRPGRLKLVTATIVIIALVALAVVVTH
Ga0307498_100750031	3300031170	Soil	KDVIAGLLILATAPVIWRVGHLDHHRPGRLRLVTATIVAVSLVALVVAVTH
Ga0318516_100241081	3300031543	Soil	LTLKKDVVAGLVIMAIAPVIWRLGGLAYHHPARLRLVTVAIVAVAAVALVVAFTA
Ga0310686_1147085362	3300031708	Soil	MLRKEVIPGLVIMGTAPAIWQLGRLAHHLPGRLLLVTATIITVAVAALLITLIS
Ga0307476_114280121	3300031715	Hardwood Forest Soil	TALSFAAVGAVVLKKDVIAGLIIIAAAPAIWQLGHLDHQRPGRLKLVTATIVAVSLVSLAVVLAY
Ga0318525_100992544	3300032089	Soil	WMRTALSFAAVAGVVLKKGDVIAGLIIMSAVPVIWELGRLAYRHQGRLKLVTAMIVAVSLVALAVALTP
Ga0335079_107792332	3300032783	Soil	AGVVLKKGDVIAGLIILSAVPVIWGLGRLAYRHQGRLKLVTAMIVAVSLVALAVAVS
Ga0335078_109128801	3300032805	Soil	AWTRTALSFAAVGAVALRKDVIAGLLIIATVPVIWRIGRLDHHRPGRLRLVTAAIVAVALVALIVAVAH
Ga0335081_100703311	3300032892	Soil	FAAVAGVLLKKDIVAGLVVMATVPAIWQLGRLAHHRPGRLRLVTATVVAVSMVALAVALA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103979

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences