Metagenome / Metatranscriptome Family F103969

Basic Information
Family ID	F103969
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	82 residues
Representative Sequence	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGD
Number of Associated Samples	83
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.13 %
% of genes near scaffold ends (potentially truncated)	13.86 %
% of genes from short scaffolds (< 2000 bps)	42.57 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Unclassified (84.158 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (26.733 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.554 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.03% β-sheet: 5.41% Coil/Unstructured: 67.57%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00850	Hist_deacetyl	6.93
PF02609	Exonuc_VII_S	4.95
PF03966	Trm112p	3.96
PF03186	CobD_Cbib	3.96
PF00067	p450	1.98
PF03548	LolA	0.99
PF03481	Sua5_C	0.99
PF13085	Fer2_3	0.99
PF16694	Cytochrome_P460	0.99
PF01728	FtsJ	0.99
PF00348	polyprenyl_synt	0.99
PF03625	DUF302	0.99
PF17201	Cache_3-Cache_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	13.86
COG1722	Exonuclease VII small subunit	Replication, recombination and repair [L]	4.95
COG1270	Cobalamin biosynthesis protein CobD/CbiB	Coenzyme transport and metabolism [H]	3.96
COG2124	Cytochrome P450	Defense mechanisms [V]	1.98
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.99
COG0293	23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	Translation, ribosomal structure and biogenesis [J]	0.99
COG1189	Predicted rRNA methylase YqxC, contains S4 and FtsJ domains	Translation, ribosomal structure and biogenesis [J]	0.99
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	0.99
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
All Organisms	root	All Organisms	15.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
cellular organisms	root	All Organisms → cellular organisms	15.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.88 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.88 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.91 %
Sneathiellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales	0.99 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	6.93 %
Alsobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae	0.99 %
Sneathiellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae	0.99 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.93 %
Alsobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter	0.99 %
Sneathiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella	0.99 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.93 %
unclassified Sneathiella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → unclassified Sneathiella	0.99 %
Alsobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → Alsobacter soli	0.99 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.93 %
Sneathiella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → unclassified Sneathiella → Sneathiella sp.	0.99 %
Alsobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → Alsobacter soli	0.99 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111006\|2214567174	Not Available	1197	Open in IMG/M
3300004479\|Ga0062595_101198157	Not Available	674	Open in IMG/M
3300005093\|Ga0062594_100415443	Not Available	1095	Open in IMG/M
3300005093\|Ga0062594_101743870	Not Available	653	Open in IMG/M
3300005332\|Ga0066388_104647467	Not Available	699	Open in IMG/M
3300005340\|Ga0070689_100890827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	787	Open in IMG/M
3300005340\|Ga0070689_102095922	Not Available	518	Open in IMG/M
3300005441\|Ga0070700_100193377	Not Available	1424	Open in IMG/M
3300005459\|Ga0068867_101138292	Not Available	714	Open in IMG/M
3300005545\|Ga0070695_100019090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4170	Open in IMG/M
3300005549\|Ga0070704_101309726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	663	Open in IMG/M
3300005719\|Ga0068861_101473279	Not Available	667	Open in IMG/M
3300006904\|Ga0075424_102716424	Not Available	517	Open in IMG/M
3300009156\|Ga0111538_10466620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1600	Open in IMG/M
3300010371\|Ga0134125_11753529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	675	Open in IMG/M
3300010399\|Ga0134127_10826707	Not Available	977	Open in IMG/M
3300011119\|Ga0105246_11145415	Not Available	713	Open in IMG/M
3300012495\|Ga0157323_1001079	Not Available	1298	Open in IMG/M
3300012506\|Ga0157324_1015381	Not Available	716	Open in IMG/M
3300012519\|Ga0157352_1043983	Not Available	642	Open in IMG/M
3300012957\|Ga0164303_10671742	Not Available	694	Open in IMG/M
3300012958\|Ga0164299_10139347	Not Available	1326	Open in IMG/M
3300012960\|Ga0164301_10040730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2311	Open in IMG/M
3300012986\|Ga0164304_10463346	Not Available	917	Open in IMG/M
3300012988\|Ga0164306_10143101	Not Available	1620	Open in IMG/M
3300012989\|Ga0164305_10707091	Not Available	824	Open in IMG/M
3300014320\|Ga0075342_1047120	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1046	Open in IMG/M
3300014745\|Ga0157377_10219693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Alsobacteraceae → Alsobacter → Alsobacter soli	1216	Open in IMG/M
3300017792\|Ga0163161_10220641	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300018028\|Ga0184608_10099419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1213	Open in IMG/M
3300025899\|Ga0207642_10822579	Not Available	592	Open in IMG/M
3300025907\|Ga0207645_10927134	Not Available	591	Open in IMG/M
3300025915\|Ga0207693_10367038	Not Available	1126	Open in IMG/M
3300025932\|Ga0207690_10376265	Not Available	1128	Open in IMG/M
3300025936\|Ga0207670_10672081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	855	Open in IMG/M
3300025941\|Ga0207711_12073015	Not Available	511	Open in IMG/M
3300025986\|Ga0207658_11519714	Not Available	612	Open in IMG/M
3300026118\|Ga0207675_100206836	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300028379\|Ga0268266_11845308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sneathiellales → Sneathiellaceae → Sneathiella → unclassified Sneathiella → Sneathiella sp.	579	Open in IMG/M
3300028380\|Ga0268265_10980317	Not Available	834	Open in IMG/M
3300031455\|Ga0307505_10029642	All Organisms → cellular organisms → Bacteria	2480	Open in IMG/M
3300031854\|Ga0310904_10144080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1376	Open in IMG/M
3300031858\|Ga0310892_10063933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1882	Open in IMG/M
3300033486\|Ga0316624_12277460	Not Available	505	Open in IMG/M
3300034090\|Ga0326723_0140903	Not Available	1057	Open in IMG/M
3300034659\|Ga0314780_192588	Not Available	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.30%
Host-Associated	Host-Associated	29.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.32%
Plants	Host-Associated → Plants	29.70%
Aquatic	Environmental → Aquatic	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.87%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Sediment	Environmental → Aquatic → Sediment	0.99%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.51%
Loam	Environmental → Terrestrial → Soil → Loam	15.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Sand	Environmental → Terrestrial → Soil → Sand	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.99%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000652	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001234028	2001200001	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPAGYHRGVGGNCIMNPTDGPYKPDPYWTPCDYSLGPQYPEGCGE
FE2_06798900	2189573003	Grass Soil	MRLFVVVLALAVAASTQAMAFGSRHQREVNGGCGANYHRGVGGNCVLNPDYGPYRPDPYWTPCDYSLG
2213611574	2209111006	Arabidopsis Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMVRKAEANQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD
ICCgaii200_07709142	2228664021	Soil	MRLFVVLLALAVAASAQATAFGAQRDARMTRKAEANEGCPAGYFRGAGGNCVMTPTDGPYKPDPYWTPCDYSLGPQYPEGCGD
ARCol0yngRDRAFT_10133442	3300000652	Arabidopsis Rhizosphere	VGVLALAVAASTQAMAFGXQRDARMVRKAEANQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0062593_1008158991	3300004114	Soil	MRLFVVLLALAVAASAQATAFGAQWDARMTRKAEANEGCPAGYFRGAGGNCVMTPTDGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0062595_1007029502	3300004479	Soil	MRLFVMVLALAVAASTQAMSFGSHGRMTKKAEANDGCSAAFYRGSGGNCVHNPDYPKLYRPDPYWTPCDYSLGPQYPEGCGN*
Ga0062595_1011981572	3300004479	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGC
Ga0062594_1004154432	3300005093	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0062594_1017438701	3300005093	Soil	MNRLFAAMLALAVAASTQAKAFEPLHKRDARMTRKAEGDGGCAAGYHRGVGGACVMNPTDGPYRADPYWMPCDYSLGPQYPEGCAQ*
Ga0070676_109276851	3300005328	Miscanthus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGGN*
Ga0066388_1046474672	3300005332	Tropical Forest Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMVRKAEANQGCPAGYHRGVGGNCVMNPGDGPYKPDPYWTPCDYSSGDYPEGCGGP*
Ga0070689_1008908271	3300005340	Switchgrass Rhizosphere	MRLFVVMLVMAITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSPGPQYPEGCGN*
Ga0070689_1020959221	3300005340	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSSGEYPEGCGGP*
Ga0070668_1018626931	3300005347	Switchgrass Rhizosphere	MVMRLFVVVLALAVAASTQAMAFGSHGRMTRKAEVNEGCPAAFYRGSGGNCVHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD*
Ga0070675_1006353481	3300005354	Miscanthus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPGGYFRGAGGNCIMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0070710_114727391	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRRFVVVLALAVAASTQAVALGSHGRMTKKAEVNEGCPAYYYRGAGGTCVQGDGSRVYHPDPYWAPCDYSQGPQIPEGCGD*
Ga0070711_1002783692	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVVMLALTVAASTQGMAFGSHGRMTKKAEVNEGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSVGPQYPEGCGGD*
Ga0070700_1001933773	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0068867_1011382921	3300005459	Miscanthus Rhizosphere	MRLFVGVLALAVAASTQVMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0070695_1000190901	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKEEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0070704_1013097262	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVVMLVMAITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNRIHNPDYPKPYRPDPYWTPCDYSPGPQYPEGCGN*
Ga0070702_1017760961	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QLFPSRLCKEERVMRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0068866_109284163	3300005718	Miscanthus Rhizosphere	ERVMRLFVGVLALAVAVSTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0068861_1014732792	3300005719	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPTDGPHKPDPYWTPCDYSLG
Ga0070715_102881142	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVVMLALTVAASTQAMAFGSHGRMTKKAEVNEGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSLGPQYPEGCGGD*
Ga0070716_1015889682	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVVVLALAVAASTQAVALGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSQNSSVPEGCGGD*
Ga0075425_1009099811	3300006854	Populus Rhizosphere	MRLFVVLLALAVAASAQATAFGAQRDARMTRKAEANEGCPAGYFRGAGGNCVMTPTGGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0075424_1009907382	3300006904	Populus Rhizosphere	MRLFVVLLALAVAASAQATAFGAQRDARMTRKAEANEGCPAGYFRGAGGNCVMTPTDGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0075424_1027164241	3300006904	Populus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMVRKAEANQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0111538_104666201	3300009156	Populus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMVRKAEANQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPGLW*
Ga0105249_127074461	3300009553	Switchgrass Rhizosphere	AQLSFEVCKKETVMRLFVMVLALAVAASTQAMSFGSHGRMTKKAEANDGCSAAFYRGSGGNCVHNPDYPKLYRPDPYWTPCDYSLGPQYPEGCGN*
Ga0126382_123484642	3300010047	Tropical Forest Soil	MQDTGVESGVGAEDQLTRLFGLVLALAVATGAQAGPYKRPPLQRQAVGSDGCPAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGN*
Ga0127503_101269392	3300010154	Soil	MRFFVMAVALALATSTQALAFGAHGKMTKKAEANEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGN*
Ga0134125_117535292	3300010371	Terrestrial Soil	MRLFVIVLVMVITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSPGPQYPEGCGN*
Ga0134127_108267072	3300010399	Terrestrial Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDY*
Ga0105246_111454151	3300011119	Miscanthus Rhizosphere	EERVMRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0150983_128748311	3300011120	Forest Soil	MRLFVVMLTLTVAASTQAMAFGSHGRMTKKAEVNEGCPAYYYRGVGGNCVQGDGSRVYRPDPYWTPCDYSLGPQYPEGCGN*
Ga0157323_10010792	3300012495	Arabidopsis Rhizosphere	MRLFVGVLALAVAAWTQAMAFGPQRDARMVRKAEANQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGK*
Ga0157324_10153812	3300012506	Arabidopsis Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMVRKAEVNQGCPTGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0157352_10439831	3300012519	Unplanted Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMVSKAEANQWCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0164300_100149114	3300012951	Soil	MRLFVVMLALTVAASTKGMAFGSHGRMTKKAEVNEGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSVGPQYPEGCGGD*
Ga0164300_100217075	3300012951	Soil	MRLFVGVLALAVAASTQAMAFGRQRDARMIRKAEVNQGCPGGYFRGAGGNCIMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0164298_102112042	3300012955	Soil	MRLFVVMLALTVAASTQAMAFGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSQGPLIPEGCGN*
Ga0164298_114014181	3300012955	Soil	MRLFVIMLVMAITASTQAMAFGQRHQRDTRKAEVNEGCPGGYFRGAGGNCVMTPDYGPYKPDPYWTPCDYSLGPQYPEGCGGN*
Ga0164303_106717421	3300012957	Soil	MRLFVVMLVMAIMGSIQAMAFGPRHQQDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYALGPQYPE
Ga0164299_101393472	3300012958	Soil	MRLFVVMLALTVAASTQGMAFGSHGRMTKKAEVNEGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSIGPQYPEGCGN*
Ga0164301_100052077	3300012960	Soil	MRLFVVMLALTVAASTQGMAFGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSVGPQYPEGCGGD*
Ga0164301_100407305	3300012960	Soil	MRLFVGVLALAVAASTQAIAFGPQRDARMIRKAEVNQGCPGGYFRGAGGNCIMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0164301_114553171	3300012960	Soil	MRLFVVMLVMTITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGN*
Ga0164302_100194236	3300012961	Soil	MRLFVVMLALTVAASTQAMAFGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSVGPQYPEGCGGD*
Ga0164304_102357073	3300012986	Soil	MRLFVVMLVMAITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSPGPQYAEGCGN*
Ga0164304_104633462	3300012986	Soil	MRLFIVMLVLAVAASTQAMAFGPRHQRDARINGGCGADYHRGVGGNCVLNPDYGPYRPDPYWTPCDYS
Ga0164306_101431013	3300012988	Soil	MRLFVVMLALTVAASTQGMAFGSHGRMTKKAEVNEGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSVGAQYPEGCGGD*
Ga0164306_103992132	3300012988	Soil	MRLFVIMLVMAITASTQAMAFGQRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSPGPQYPEGCGN*
Ga0164305_101786941	3300012989	Soil	MRLFVVVLASAVAASTQAMAFGSHGRMTKSAEVNEGCPAYYYRGVGGTCVQGDGSRVYHPDPYWTPCDYSQGPQIPEGCGD*
Ga0164305_107070911	3300012989	Soil	RLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0157372_102458572	3300013307	Corn Rhizosphere	MRLFVGVRALAVAASTQAMSFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMSPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0075342_10471201	3300014320	Natural And Restored Wetlands	VAGFALAVVVSTPGRGARALHPREAKMARKAVGDGGCGKGFHRGVGGNCILNPTDGPYRPDPYWTPCDYSLGPQYPEGCGF*
Ga0157380_101652762	3300014326	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEIDQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE*
Ga0157377_102196931	3300014745	Miscanthus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSL
Ga0132258_102779532	3300015371	Arabidopsis Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGD*
Ga0163161_102206413	3300017792	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKEEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0184608_100994192	3300018028	Groundwater Sediment	MRFFVMALALAVAASTQAMAFGSHGKMTKKAEANEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGN
Ga0242662_101519661	3300022533	Soil	MRLFVVMLALTVAASTQGMAFGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSQGPQIPEGSGD
Ga0207692_104079993	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRRFVVVLALAVAASTQAVALGSHGRMTKKAEVNEGCPAYYYRGAGGTCVQGDGSRVYHPDPYWTPCDYSVGPQYPEGCGGD
Ga0207642_108225791	3300025899	Miscanthus Rhizosphere	QERVMRLFVGVLALAVAVSTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0207685_100730563	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MRLFVVMLALTVAASTQAMAFGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSVGPQYPEGCGGD
Ga0207645_109271341	3300025907	Miscanthus Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQ
Ga0207693_103670383	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRRFVVVLALAVAASTQAVALGSHGRMTKKAEVNEGCPAYYYRGAGGTCVQGDGSRVYHPDPYWAPCDYSQGP
Ga0207690_103762652	3300025932	Corn Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPTGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0207670_106720812	3300025936	Switchgrass Rhizosphere	MRLFVVMLVMAITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSPGPQYPEGCGN
Ga0207711_120730151	3300025941	Switchgrass Rhizosphere	LCKEERVMRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0207658_115197142	3300025986	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDY
Ga0207648_114223932	3300026089	Miscanthus Rhizosphere	SRPAASTQAMAFGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0207675_1002068364	3300026118	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPTDGPYKPDPYWTPCDYSLGPQYPERCGE
Ga0209887_10240352	3300027561	Groundwater Sand	MRLFVVALALAVAASTQAMAFGPLEKRDAKMTRKAEVNEGCPAGYYRGAGGNCVLNPSDGPYKPDPYWTPCDYSLGPQYPEGCGD
Ga0268266_118453081	3300028379	Switchgrass Rhizosphere	MNRLFAAMLALAVAASTQAKAFEPLHKRDARMTRKAEGDGGCAAGYHRGVGGACVMNPTDGPYRADPYWMPCDYSLGPQYPEGCAQ
Ga0268265_109803171	3300028380	Switchgrass Rhizosphere	MRLFVGVLALAVAASTQAMACGPQRDARMIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0247823_111535182	3300028590	Soil	DKVMRLFVMVLALAVAASTQAMSFGSHGRMTKKAEANDGCSAAFYRGSGGNCVHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGN
Ga0247822_101243783	3300028592	Soil	MRLFVMVLALAVAASTQAMSFGSHGRMTKKAEANDGCSAAFYRGSGGNCVHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD
Ga0247822_102686391	3300028592	Soil	MRLFVLVLALAVAASTQAMSFGPNGRMTKKAEANDGCPAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPHIPRAVVATSNGGP
Ga0247820_103392852	3300028597	Soil	MRLFVMVLALAVAASTQAMSFGSHGRMTKKAEANDGCSAAFYRGSGGNCVHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGN
Ga0170824_1136686051	3300031231	Forest Soil	MRLFVVVQALAVAASTQAMAFGSHGRMTKKAEVNEGCPAYYYRGAGGTCVQGDGSRVYHPDPYWTPCDYSQSSLIPEGCGD
Ga0307505_100296424	3300031455	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0310888_109632731	3300031538	Soil	MRLFVVMLVMAITASTQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD
Ga0307469_110512271	3300031720	Hardwood Forest Soil	MRFFVMALALAVAASTQAMEFGSHGKMTKKAEANEGCSPAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGN
Ga0307469_111905132	3300031720	Hardwood Forest Soil	MRLFVVMLVMAIMGSIQAMAFGPRHQQDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGC
Ga0307469_115294141	3300031720	Hardwood Forest Soil	MRLFVLVLALAVAASTQAMSFGSHGRMTKKAEANDGCPAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD
Ga0307468_1016211282	3300031740	Hardwood Forest Soil	VMLVMAIMGSIQAMAFGPRHQQDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD
Ga0307473_108534081	3300031820	Hardwood Forest Soil	MRLFVVVLALAAAASTQAMAFGSHGRMTKKAEVNEGCPAAFYRGSGGNCVHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGE
Ga0310904_101080173	3300031854	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARIIRKAEINQGCPAGYHRGVGGNCVMNPEDGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0310904_101440802	3300031854	Soil	MRLFVVMLVMAIMASSQAMAFGPRHQRDTRKAEVNEGCSAAFYRGSGGNCIHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD
Ga0310904_104158811	3300031854	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPGGYFRGAGGNCIMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD
Ga0310892_100639331	3300031858	Soil	MRLFVGVLALAVAASTQAIAFGPQRDARMIRKAEVNQGCPGGYFRGAGGNCIMNPADGPYKPDPYWTPCDYSLGPQYPEGCGD
Ga0307471_1013711502	3300032180	Hardwood Forest Soil	VVPLRSCLSEVCKKETVMRLFVVVLALAVAASTQAMAFGSHGRMTRKAEVNEGCPAAFYRGSGGNCVHNPDYPKPYRPDPYWTPCDYSLGPQYPEGCGGD
Ga0307471_1016501391	3300032180	Hardwood Forest Soil	MRLFVMVLALAVAASTQAMSFGSHGRMTKKAEANDGCSAAFYRGSGGNCVHNPDYPKLYRPDPYWTPCDYSLGPQYPEGCGN
Ga0307471_1024406452	3300032180	Hardwood Forest Soil	MRLFVVMLALTVAASTQAMAFGSHGRMTKKAEVNGGCPAYYYRGVGGNCVQGDGSRVYHPDPYWTPCDYSQGPLIPEGCGN
Ga0316624_122774601	3300033486	Soil	MRLFVGVLALAVAASTQAMAFGPQRDARMIRKAEVNQGCPAGYHRGVGGNCFMNPADGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0326723_0140903_598_849	3300034090	Peat Soil	MRLFVGVLALAVAASTQAMAFGPQRDVRMIRKAEVNQGCPAGYHRGVGGNCVMNPADGPYKPDPYWTPCDYSLGPQYPEGCGE
Ga0314780_192588_160_411	3300034659	Soil	MRLFVGVLALSVAVSTQAMAFGPQRDARMIRKAEVNQGCPTGYHRGVGGNCVMNPTDGPYKPDPYRTPCDYSLGPQYPEGCSE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103969

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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