Metagenome / Metatranscriptome Family F103962

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	52 residues
Representative Sequence	VADMNETLELVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPPR
Number of Associated Samples	91
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.00 %
% of genes near scaffold ends (potentially truncated)	91.09 %
% of genes from short scaffolds (< 2000 bps)	94.06 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.198 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.881 % of family members)
Environment Ontology (ENVO)	Unclassified (22.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.19% β-sheet: 27.85% Coil/Unstructured: 56.96%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13365	Trypsin_2	62.38
PF00891	Methyltransf_2	2.97
PF01175	Urocanase	1.98
PF12681	Glyoxalase_2	1.98
PF04542	Sigma70_r2	1.98
PF13751	DDE_Tnp_1_6	0.99
PF02650	HTH_WhiA	0.99
PF02514	CobN-Mg_chel	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.98
COG2987	Urocanate hydratase	Amino acid transport and metabolism [E]	1.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.98
COG1429	Cobalamin biosynthesis protein CobN, Mg-chelatase	Coenzyme transport and metabolism [H]	0.99
COG1481	DNA-binding transcriptional regulator WhiA, involved in cell division	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.20 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.20 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.20 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	72.28 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47.52 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.60 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.99 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	10.89 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	10.89 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Actinomadura parvosata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata	10.89 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Actinomadura parvosata subsp. kistnae	subspecies	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	10.89 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig30740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300001593\|JGI12635J15846_10906421	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300002245\|JGIcombinedJ26739_101007984	All Organisms → cellular organisms → Bacteria → Terrabacteria group	717	Open in IMG/M
3300002568\|C688J35102_120601459	Not Available	1229	Open in IMG/M
3300003218\|JGI26339J46600_10024137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1750	Open in IMG/M
3300003368\|JGI26340J50214_10139392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300005179\|Ga0066684_10538575	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005332\|Ga0066388_100344603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2136	Open in IMG/M
3300005339\|Ga0070660_101529578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	567	Open in IMG/M
3300005355\|Ga0070671_100205493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1670	Open in IMG/M
3300005364\|Ga0070673_101481949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	640	Open in IMG/M
3300005435\|Ga0070714_101081211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	781	Open in IMG/M
3300005435\|Ga0070714_101393546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300005439\|Ga0070711_100446140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1058	Open in IMG/M
3300005439\|Ga0070711_101059532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300005518\|Ga0070699_100201045	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300005553\|Ga0066695_10061049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2260	Open in IMG/M
3300005557\|Ga0066704_10536354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300005602\|Ga0070762_10755157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300005610\|Ga0070763_10577854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300005614\|Ga0068856_100407924	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005842\|Ga0068858_100205036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1865	Open in IMG/M
3300006028\|Ga0070717_10463133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1143	Open in IMG/M
3300006028\|Ga0070717_11461057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	620	Open in IMG/M
3300006102\|Ga0075015_100902350	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300006162\|Ga0075030_101231181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300006163\|Ga0070715_10425975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	743	Open in IMG/M
3300006163\|Ga0070715_10641355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300006174\|Ga0075014_100520176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	669	Open in IMG/M
3300006175\|Ga0070712_100375247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1169	Open in IMG/M
3300006175\|Ga0070712_101380484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	614	Open in IMG/M
3300007788\|Ga0099795_10221317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	806	Open in IMG/M
3300009093\|Ga0105240_11114010	All Organisms → cellular organisms → Bacteria → Terrabacteria group	839	Open in IMG/M
3300009764\|Ga0116134_1129910	All Organisms → cellular organisms → Bacteria → Terrabacteria group	897	Open in IMG/M
3300010043\|Ga0126380_11059628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	688	Open in IMG/M
3300010043\|Ga0126380_12142868	Not Available	515	Open in IMG/M
3300010329\|Ga0134111_10080154	Not Available	1229	Open in IMG/M
3300010371\|Ga0134125_10098773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3251	Open in IMG/M
3300010371\|Ga0134125_11115195	All Organisms → cellular organisms → Bacteria → Terrabacteria group	863	Open in IMG/M
3300010371\|Ga0134125_13099444	Not Available	503	Open in IMG/M
3300010379\|Ga0136449_104154067	Not Available	538	Open in IMG/M
3300010396\|Ga0134126_12621064	Not Available	547	Open in IMG/M
3300010400\|Ga0134122_10378671	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300010867\|Ga0126347_1394340	All Organisms → cellular organisms → Bacteria → Terrabacteria group	841	Open in IMG/M
3300010876\|Ga0126361_10498759	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1048	Open in IMG/M
3300010880\|Ga0126350_11389481	All Organisms → cellular organisms → Bacteria → Terrabacteria group	816	Open in IMG/M
3300012203\|Ga0137399_10489363	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1031	Open in IMG/M
3300012209\|Ga0137379_11104594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	699	Open in IMG/M
3300012210\|Ga0137378_10980119	All Organisms → cellular organisms → Bacteria → Terrabacteria group	759	Open in IMG/M
3300012285\|Ga0137370_10201051	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300012357\|Ga0137384_10922574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	703	Open in IMG/M
3300012359\|Ga0137385_10768935	All Organisms → cellular organisms → Bacteria → Terrabacteria group	801	Open in IMG/M
3300012960\|Ga0164301_10497534	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300014654\|Ga0181525_10258409	All Organisms → cellular organisms → Bacteria → Terrabacteria group	950	Open in IMG/M
3300015265\|Ga0182005_1271927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	530	Open in IMG/M
3300016294\|Ga0182041_11151764	All Organisms → cellular organisms → Bacteria → Terrabacteria group	706	Open in IMG/M
3300016341\|Ga0182035_11063932	All Organisms → cellular organisms → Bacteria → Terrabacteria group	719	Open in IMG/M
3300016445\|Ga0182038_11482560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	609	Open in IMG/M
3300017822\|Ga0187802_10340031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	588	Open in IMG/M
3300017822\|Ga0187802_10383417	Not Available	555	Open in IMG/M
3300017928\|Ga0187806_1035423	Not Available	1488	Open in IMG/M
3300017942\|Ga0187808_10148872	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1031	Open in IMG/M
3300017970\|Ga0187783_10645162	All Organisms → cellular organisms → Bacteria → Terrabacteria group	765	Open in IMG/M
3300017970\|Ga0187783_10740660	All Organisms → cellular organisms → Bacteria → Terrabacteria group	709	Open in IMG/M
3300017974\|Ga0187777_11140264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	568	Open in IMG/M
3300018034\|Ga0187863_10546303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300019888\|Ga0193751_1130569	All Organisms → cellular organisms → Bacteria → Terrabacteria group	925	Open in IMG/M
3300020002\|Ga0193730_1013028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2368	Open in IMG/M
3300020581\|Ga0210399_11489007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	526	Open in IMG/M
3300021405\|Ga0210387_11262553	All Organisms → cellular organisms → Bacteria → Terrabacteria group	639	Open in IMG/M
3300021415\|Ga0193694_1011603	Not Available	1191	Open in IMG/M
3300022467\|Ga0224712_10362528	Not Available	686	Open in IMG/M
3300024179\|Ga0247695_1030864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	762	Open in IMG/M
3300024288\|Ga0179589_10444832	Not Available	597	Open in IMG/M
3300025898\|Ga0207692_10097916	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1604	Open in IMG/M
3300026467\|Ga0257154_1082666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	513	Open in IMG/M
3300026498\|Ga0257156_1062000	All Organisms → cellular organisms → Bacteria → Terrabacteria group	773	Open in IMG/M
3300027090\|Ga0208604_1022352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300027096\|Ga0208099_1013391	Not Available	1110	Open in IMG/M
3300027545\|Ga0209008_1090229	Not Available	686	Open in IMG/M
3300027635\|Ga0209625_1068975	All Organisms → cellular organisms → Bacteria → Terrabacteria group	791	Open in IMG/M
3300027698\|Ga0209446_1030056	Not Available	1361	Open in IMG/M
3300027725\|Ga0209178_1102744	All Organisms → cellular organisms → Bacteria → Terrabacteria group	956	Open in IMG/M
3300027729\|Ga0209248_10013159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2611	Open in IMG/M
3300028789\|Ga0302232_10583280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300029636\|Ga0222749_10732362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	541	Open in IMG/M
3300030007\|Ga0311338_11766245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	558	Open in IMG/M
3300030013\|Ga0302178_10153503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1139	Open in IMG/M
3300030509\|Ga0302183_10102797	Not Available	1125	Open in IMG/M
3300031573\|Ga0310915_10924061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300031715\|Ga0307476_10325473	Not Available	1129	Open in IMG/M
3300031753\|Ga0307477_10752600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	649	Open in IMG/M
3300031765\|Ga0318554_10691093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	573	Open in IMG/M
3300031770\|Ga0318521_10439445	All Organisms → cellular organisms → Bacteria → Terrabacteria group	780	Open in IMG/M
3300031797\|Ga0318550_10261929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	839	Open in IMG/M
3300031845\|Ga0318511_10221727	All Organisms → cellular organisms → Bacteria → Terrabacteria group	844	Open in IMG/M
3300031910\|Ga0306923_12462039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura parvosata → Actinomadura parvosata subsp. kistnae	514	Open in IMG/M
3300032039\|Ga0318559_10144690	Not Available	1077	Open in IMG/M
3300032783\|Ga0335079_11774641	Not Available	601	Open in IMG/M
3300032955\|Ga0335076_11271415	Not Available	620	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.08%
Host-Associated	Host-Associated	7.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.22%
Aquatic	Environmental → Aquatic	13.86%
Plants	Host-Associated → Plants	7.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.26%
Freshwater	Environmental → Aquatic → Freshwater	10.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.95%
Peat	Environmental → Terrestrial → Peat	3.96%
Sediment	Environmental → Aquatic → Sediment	2.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.52%
Loam	Environmental → Terrestrial → Soil → Loam	21.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.95%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.99%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00316280	2166559006	Grass Soil	NETLELVTRHGGQVLEPPAPDGPTRTLATIADPEGNPIGLAGHALRP
JGI12635J15846_109064211	3300001593	Forest Soil	WLHVADMTKTLNNVTEHGGEILEPATADGPTRTLATILDPEGNPIGLAGHARPR*
JGIcombinedJ26739_1010079842	3300002245	Forest Soil	ETLDRVTAHGGDILEPPAXDGPTRXLATIIDPEGNPIGLAGHAPPS*
C688J35102_1206014591	3300002568	Soil	ETLGLVTARGGRILTSPASDGPTRILATIADPEGNPIGLAAHTPPAQAPH*
JGI26339J46600_100241372	3300003218	Bog Forest Soil	MLWIHVAXMAETLEQVTTHGGEVLEPPAPDGPTRTLATIMDPEGNSIGLAGHAPPP*
JGI26340J50214_101393921	3300003368	Bog Forest Soil	IHVADMAETLELVTKNGGEILEPPAPDGPTRTLATITDPEGNPIGLAGHAPLP*
Ga0066684_105385751	3300005179	Soil	DAGPVLWLAVADMTDTLELVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPPRSTSP*
Ga0066388_1003446034	3300005332	Tropical Forest Soil	TLELVTSNGGQILEPPAPDGPTRILATIADPEGNSIGLAGHAPPR*
Ga0070660_1015295782	3300005339	Corn Rhizosphere	WLAVADMNETLELVTRHGGQILEPPAPDGPTRTLATIADSEGNPLGLAGHAPP*
Ga0070671_1002054931	3300005355	Switchgrass Rhizosphere	TLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR*
Ga0070673_1014819492	3300005364	Switchgrass Rhizosphere	WLAVADMDETLKQVTRHGGQILEPPVPDGPTRILATIADSEGNPLGLAGHAPPP*
Ga0070714_1010812111	3300005435	Agricultural Soil	ETLKQVTRHGGQILEPPVPDGPTRILATIADSEGNPIGLAGHAPPP*
Ga0070714_1013935461	3300005435	Agricultural Soil	ETLKQVTRHGGQILEPPVPDGPTRILATIADSEGNPIGLAGHAPGA*
Ga0070711_1004461401	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GPVIWLAVADMNETLEQVVRHGGQILEPPAPDGPTRTLATIADSEGNPIGLAGHAPSP*
Ga0070711_1010595321	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ADMDETLKQVTRHGGQILEPPVPDGPTRILATIADSEGNPIGLAGHAPGA*
Ga0070699_1002010451	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	DAGPVIWLAVADMNETLEQVTRHGGQILEPPAPDGPTRILATIADSEGNPIGLAGHPPGA
Ga0066695_100610492	3300005553	Soil	MNETLEQVTRHGGRILEPAAPDGPTRTLATIADSEGNPIGLAGHAPPR*
Ga0066704_105363541	3300005557	Soil	PARDAGPVLWLAVADMTDTLELVTRHGGQILEPPAPDGPTRTLATIADSEGNPIGLAGHAPGA*
Ga0070762_107551572	3300005602	Soil	LERVTAHGGKILQPPSPDGPQRTLATILDPEGNPIGLAAHAPTRGDPTGR*
Ga0070763_105778542	3300005610	Soil	DAGPMIWIHVADLDQTLAQVTKHGGEIADPPSPDGPHRILATIVDPEGNPVGLASHQAHPYEND*
Ga0068856_1004079242	3300005614	Corn Rhizosphere	VIWLAVQDMDEALSLVITHGGQILVPAAPDGPTRVLATIADPEGNPVGLAAHAPH*
Ga0068858_1002050362	3300005842	Switchgrass Rhizosphere	DQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR*
Ga0070717_104631332	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LDQVTRHGGQILEPPAPDGPTRILATIADPEGNPIGLAGHGPGA*
Ga0070717_114610571	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	NKTLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR*
Ga0075015_1009023501	3300006102	Watersheds	DLDETLERVVTHGGEIIDPPSPDGPTRTLATILDPEGNSIGLASHSSSA*
Ga0075030_1012311812	3300006162	Watersheds	GTLEQVIRHGGEVLESPAPDGPTRTLATIIDPEGNPIGLAGHAPPP*
Ga0070715_104259752	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LAVADMNETLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPQQ*
Ga0070715_106413552	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VADMNETLDQVTRHGGQILEPPAPDGPTRILATIADPEGNPIGLAAHAPGA*
Ga0075014_1005201761	3300006174	Watersheds	TLERVVTHGGEIIDPPSPDGPTRTLATILDPEGNSIGLASHSSSA*
Ga0070712_1003752471	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ADMNETLDQVTRHGGQILEPPAPDGPTRILATIADPEGNPIGLAGHGPGA*
Ga0070712_1013804841	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPQQ*
Ga0099795_102213172	3300007788	Vadose Zone Soil	DMDETLKQVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPGAQGGG*
Ga0105240_111140101	3300009093	Corn Rhizosphere	ETLELVTRHGGQILEPPAPDGLTRTLATIADSEGNPLGLAGHAPPP*
Ga0116134_11299102	3300009764	Peatland	WIHVTDMAGTLEQVIRHGGEVLESPAPDGPTRTLATIIDPEGNPIGLAGHAPPP*
Ga0126380_110596282	3300010043	Tropical Forest Soil	DAGPVLWLAVADMNETLELVTSNGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPPR
Ga0126380_121428681	3300010043	Tropical Forest Soil	AVADMNETLELVTSNGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHTPPR*
Ga0134111_100801542	3300010329	Grasslands Soil	AVADMNETLEQVTRHGGRILEPAAPDGPTRTLATIADSEGNPIGLAGHAPPR*
Ga0134125_100987732	3300010371	Terrestrial Soil	VLWLAVADMNETLELVTRHGGQILEPPAPDGPTRTLATIADSEGNPLGLAGHAPP*
Ga0134125_111151951	3300010371	Terrestrial Soil	IWLAVADMNKTLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR*
Ga0134125_130994442	3300010371	Terrestrial Soil	KQVTRHGGQILEPPVPDGPTRILATIADSEGNPIGLAGHAPGA*
Ga0136449_1041540672	3300010379	Peatlands Soil	DAGPMIWIHVADLAQTLAAVTKNGGEITDPPSPDGPHRTLATIVDPEGNPIGLASHSLPR
Ga0134126_126210641	3300010396	Terrestrial Soil	LDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR*
Ga0134122_103786712	3300010400	Terrestrial Soil	VLWLAVADMNETLELVTRHGGQILEPPAPDGPTRTLATIADSEGNPLGLAGHAPPP*
Ga0126347_13943401	3300010867	Boreal Forest Soil	QWVPGRPVAPEAGPMIWLHVADLDETLAQVARHGGGITDPPSPDGPNRTLATIVDPEGNPIGLAGHEARTHEDD*
Ga0126361_104987591	3300010876	Boreal Forest Soil	PLLWLHVADLDQTLKQVTIHGGQITEPPTPDGPDRTLATILDPEGNPVGLAAHTR*
Ga0126350_113894812	3300010880	Boreal Forest Soil	LAVADMNETLDQVTRHGGQILEPPAPDGPTRILATIADSEGNPIGLAGHARPR*
Ga0137399_104893632	3300012203	Vadose Zone Soil	LEQVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPPR*
Ga0137379_111045941	3300012209	Vadose Zone Soil	LWLAVADMNETLGQVTRHGGQVLEPPVPDGPTRILATIADSEGNPIGLAGHAPPR*
Ga0137378_109801192	3300012210	Vadose Zone Soil	VADMNDTLELVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPPL*
Ga0137370_102010512	3300012285	Vadose Zone Soil	VIWLAVADMNDTLELVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAG
Ga0137384_109225741	3300012357	Vadose Zone Soil	PVLWLAVADMNETLGQVTRHGGQVLEPPVPDGPTRILATIADSEGNPIGLAGHAPPR*
Ga0137385_107689351	3300012359	Vadose Zone Soil	MIWLAVADMNDTLERVTRHGGEILEPPAPDGPVRTLATIVDPEGNPVGLASHAPPP*
Ga0164301_104975341	3300012960	Soil	AVADMNETLDQVTRHGGQILEPPVSDGPSRILATIADSEGNPVGLAGHAPPR*
Ga0181525_102584092	3300014654	Bog	MIWIHVADLDQTLATVVQHGGEIIDPPSLDGPNRTLATIVDPEGNTVGLASHAN*
Ga0182005_12719271	3300015265	Rhizosphere	MNETLELVTRHGGQILEPSAPDGPTRTLAAIADSEGNLLGLAGHAPPP*
Ga0182041_111517642	3300016294	Soil	VIWIAIADMSETLEKAAAHGGQVLQSPAPDGPTRTLAMITDTEGNPVGLAAHTP
Ga0182035_110639321	3300016341	Soil	DLDQTLARVVEHGGEIIDPPSPDGPTRTLATIVDPEGNSVGLAGHAPPGEASD
Ga0182038_114825601	3300016445	Soil	TLGRVAAHGGAILEPPSPDGSTRVLATIADSEGNPIGLASHAVPR
Ga0187802_103400311	3300017822	Freshwater Sediment	LERVVTHGGEIIDPPSPDGPTRTLATILDPEGNSIGLAGHSSPQ
Ga0187802_103834171	3300017822	Freshwater Sediment	TLADVVEHGGEITDPPSPDGPTRTLATILDPEGNPVGLASHATHQ
Ga0187806_10354231	3300017928	Freshwater Sediment	TDLDETLERAVAHGAEITDSPTPDGPDRTLAAILDPAGNPIGLAAHAKPE
Ga0187808_101488722	3300017942	Freshwater Sediment	ADLDQTLADVVEHGGEITDPPSPDGPTRTLATILDPEGNPVGLASHATHQ
Ga0187783_106451621	3300017970	Tropical Peatland	QTLEHVAAHGGEILEPPAPDGPTRILATIIDPEGNPIGLAGHASP
Ga0187783_107406601	3300017970	Tropical Peatland	DLDETLANAVQHGGEIIDPPSPDGPTRVLATIVDPEGNPIGLASHQQPSGD
Ga0187777_111402642	3300017974	Tropical Peatland	VADMGDALERVTAHGGQILEPPSPDGPTRVLATIIDPEGNPIGLAGHASPQ
Ga0187863_105463032	3300018034	Peatland	ADMDQTLEQVTRHGGQIIESPAPDGPDRTLATIFDPEGNPIGLAAHAR
Ga0193751_11305691	3300019888	Soil	ARDAGPMIWLAVADMAETLERVTRHGGEILKPPVPDGPTRTLATIIDPEGNPIGLAGHAPRA
Ga0193730_10130284	3300020002	Soil	DMNETLELATRHGGQILEPPAPDGPTRTLATIADSEGNPLGLAGHATPP
Ga0210399_114890071	3300020581	Soil	LDQTLEQVTRHGGEVTDPPSPDGPDRTLATILDPEGNPIGLASHSPPR
Ga0213875_100570673	3300021388	Plant Roots	MDQALAQVTNHGGRIATPPEPDGPDRILATIADPDGNPVGLVASPHQ
Ga0210387_112625531	3300021405	Soil	LEQVARHGGGITDPPSPDGPDRTLATIVDPEGNAIGLASHKNS
Ga0193694_10116031	3300021415	Soil	AGMNETLELVIRHGGQILEPPAPDGPARTPARTLATIADPEGNPIGLVGHAPPP
Ga0224712_103625282	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LAVADMNKTLDQVTRYGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR
Ga0247695_10308641	3300024179	Soil	GPVIWLAVADMNKTLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR
Ga0179589_104448321	3300024288	Vadose Zone Soil	ADIDETLKQVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPGA
Ga0207692_100979161	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	KTLDQVTRHGGQILEPPASDGPSRILATIADSEGNPVGLAGHAPPR
Ga0257154_10826661	3300026467	Soil	IWIHVADVAQTLEAVTKNGGEITDPPSPDGPHRTLATIVDPEGNPIGLASHTDS
Ga0257156_10620002	3300026498	Soil	VADMNETLELVTRHGGQILEPPAPDGPTRTLATIADPEGNPIGLAGHAPPR
Ga0208604_10223521	3300027090	Forest Soil	LDETLEAVTKNGGGITDPPSPDGPHRTLATIVDPEGNLIGLASHTDS
Ga0208099_10133911	3300027096	Forest Soil	ERVTAHGGETLQPPSPDGPQRTLATILDPEGNPIGLAAHATDPAGR
Ga0209008_10902291	3300027545	Forest Soil	VADLAQTLDEVTKNGGEIIDPPSPDGPDRTLATIVDPEGNPIGLASHQTQTQTQTRTNG
Ga0209625_10689751	3300027635	Forest Soil	AKNGGEIIDPPSPDGPNRTLATIVDPEGNSIGLAGHQAHTYEND
Ga0209446_10300561	3300027698	Bog Forest Soil	VRHARNARAGNATLEQVIKHGGEVLEPSAPDGPTRTLATIIDPEGNPIGLAGHAPLP
Ga0209178_11027441	3300027725	Agricultural Soil	IWLAVADMNKTLDQVTRHGGQILEPPASDGPTRILATIADSEGNPIGLAGHAPSP
Ga0209248_100131594	3300027729	Bog Forest Soil	PPAPDAGPMIWIHVADLAQTLEAVTKNGGDITDPPSPDGPHRTLATIVDPEGNPIGLASHTDS
Ga0302232_105832801	3300028789	Palsa	LERATAHGGQILEPPSPDGPQRTLATIGDPEGNPIGLASHATDPAGG
Ga0222749_107323621	3300029636	Soil	DLDETLEQVARHGGGITDPPSPDGPDRTLATIVDPEGNAIGLASHKDS
Ga0311338_117662451	3300030007	Palsa	TLKQVTAHGGQILEPPSPDGPTRTLATILDPEGNPIGLAAHTAPR
Ga0302178_101535031	3300030013	Palsa	DMNETLERATAHGGQILEPPSPDGPQRTLATIGDPEGNPIGLASHATDPAGG
Ga0302183_101027971	3300030509	Palsa	ETLKLVTAHGGEILEPPSPDGPERTLATIADPEGNPIGLASHARNRLSCALTPC
Ga0310915_109240612	3300031573	Soil	DETLANAVEHGGEIIDPPSPDGPNRTLATIVDPEGNPIGLASHASPDP
Ga0307476_103254732	3300031715	Hardwood Forest Soil	DLDETLEQVARHGGGITDPPSPDGPDRTLATIVDPEGNAIGLASHKDSQRTI
Ga0307477_107526001	3300031753	Hardwood Forest Soil	RPAAADAGPMIWIHVADLDQTLEAVTENGGGITDPPSPDGPHRTLATIVDPEGNPIGLASHTDS
Ga0318554_106910931	3300031765	Soil	ADLGETLDRVTAHGGVILEPPSPDGPTRVLATIADPEGNPIGLASHAVPR
Ga0318521_104394452	3300031770	Soil	DETLANAVRHGGEIIDPPSPDGPDRTLATIVDPEGNPIGLASHASPDP
Ga0318550_102619292	3300031797	Soil	IWIHVADMKQTLEQVTTHGGEILEPPVPDGPTRTLATIIDPEGNPIGLAGHAAPQ
Ga0318511_102217272	3300031845	Soil	VVEHGGEIIDPPSPDGPTRTLATIVDPEGNSVGLAGHAPPAEASD
Ga0306923_124620392	3300031910	Soil	APDAGPMIWIHVADLDETLANAVRHGGEIIDPPSPDGPNRTLATIVDPEGDPIGLASHASSE
Ga0318559_101446902	3300032039	Soil	LGETLDRVTAHGGVILEPPSPDGPTRVLATIADPEGNPIGLASHAVPR
Ga0335079_117746412	3300032783	Soil	MTQDSAQPIMNETLEHVTRHGGEILEPPAPDGPTRILATIIDPEGHPIGLASHRPRPQGP
Ga0335076_112714151	3300032955	Soil	DLEQTLAVAASNGGEIIDPPAPDGPDRTLATILDPEGNSVGLASHSPSLSGGRNASG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences