Metagenome Family F103944

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103944
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	79 residues
Representative Sequence	ALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.01 %
% of genes near scaffold ends (potentially truncated)	90.10 %
% of genes from short scaffolds (< 2000 bps)	88.12 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (11.881 % of family members)
Environment Ontology (ENVO)	Unclassified (52.475 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.56% β-sheet: 27.10% Coil/Unstructured: 52.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00498	FHA	30.69
PF13672	PP2C_2	3.96
PF00072	Response_reg	0.99
PF13844	Glyco_transf_41	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.02 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.02 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.02 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	95.05 %
Unclassified	root	N/A	1.98 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.99 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	95.05 %
Unclassified	root	N/A	1.98 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.97 %
Unclassified	root	N/A	1.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.97 %
Unclassified	root	N/A	1.98 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.97 %
Unclassified	root	N/A	1.98 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	0.99 %
Caldimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas	0.99 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.97 %
Unclassified	root	N/A	1.98 %
Caldimonas tepidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	0.99 %
Aquisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_10586223	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300000559\|F14TC_100408505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1493	Open in IMG/M
3300004463\|Ga0063356_100400074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1766	Open in IMG/M
3300004479\|Ga0062595_100057637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1824	Open in IMG/M
3300005293\|Ga0065715_10562323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	733	Open in IMG/M
3300005331\|Ga0070670_100214294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1675	Open in IMG/M
3300005331\|Ga0070670_100757167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	875	Open in IMG/M
3300005333\|Ga0070677_10909831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	509	Open in IMG/M
3300005339\|Ga0070660_100874224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	757	Open in IMG/M
3300005344\|Ga0070661_101678571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	538	Open in IMG/M
3300005353\|Ga0070669_100597942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	924	Open in IMG/M
3300005367\|Ga0070667_100083342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2739	Open in IMG/M
3300005367\|Ga0070667_100337158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1363	Open in IMG/M
3300005367\|Ga0070667_100780582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	886	Open in IMG/M
3300005436\|Ga0070713_101600373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	632	Open in IMG/M
3300005438\|Ga0070701_10207006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1163	Open in IMG/M
3300005445\|Ga0070708_100383192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1326	Open in IMG/M
3300005451\|Ga0066681_10568348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	700	Open in IMG/M
3300005458\|Ga0070681_10248056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1693	Open in IMG/M
3300005459\|Ga0068867_100047414	All Organisms → cellular organisms → Bacteria	3158	Open in IMG/M
3300005459\|Ga0068867_100492119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1053	Open in IMG/M
3300005468\|Ga0070707_101626857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	613	Open in IMG/M
3300005530\|Ga0070679_102183232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	503	Open in IMG/M
3300005552\|Ga0066701_10409882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	839	Open in IMG/M
3300005564\|Ga0070664_101926182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	561	Open in IMG/M
3300005568\|Ga0066703_10264947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1042	Open in IMG/M
3300005617\|Ga0068859_100406254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1458	Open in IMG/M
3300005843\|Ga0068860_100241174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1758	Open in IMG/M
3300005843\|Ga0068860_100901581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	900	Open in IMG/M
3300006046\|Ga0066652_100859973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	866	Open in IMG/M
3300006163\|Ga0070715_10659877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	620	Open in IMG/M
3300006358\|Ga0068871_100310238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1387	Open in IMG/M
3300006794\|Ga0066658_10572015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	614	Open in IMG/M
3300006806\|Ga0079220_10913841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	683	Open in IMG/M
3300009094\|Ga0111539_12142331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	649	Open in IMG/M
3300009143\|Ga0099792_10285705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	974	Open in IMG/M
3300009177\|Ga0105248_11460604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	774	Open in IMG/M
3300009177\|Ga0105248_13192136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	521	Open in IMG/M
3300009551\|Ga0105238_10599340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1109	Open in IMG/M
3300010366\|Ga0126379_12720487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	591	Open in IMG/M
3300010371\|Ga0134125_13000039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	512	Open in IMG/M
3300010400\|Ga0134122_10777263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	911	Open in IMG/M
3300010403\|Ga0134123_10173582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1808	Open in IMG/M
3300012200\|Ga0137382_10400550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	967	Open in IMG/M
3300012206\|Ga0137380_10303732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1430	Open in IMG/M
3300012478\|Ga0157328_1004051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	797	Open in IMG/M
3300012898\|Ga0157293_10321110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	519	Open in IMG/M
3300012955\|Ga0164298_11380099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	544	Open in IMG/M
3300012961\|Ga0164302_11426746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	567	Open in IMG/M
3300013104\|Ga0157370_11716613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	564	Open in IMG/M
3300013105\|Ga0157369_10855544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	933	Open in IMG/M
3300013296\|Ga0157374_10111043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2637	Open in IMG/M
3300013306\|Ga0163162_10505814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1338	Open in IMG/M
3300014166\|Ga0134079_10195251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	846	Open in IMG/M
3300014325\|Ga0163163_10050644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4090	Open in IMG/M
3300014325\|Ga0163163_12511845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	573	Open in IMG/M
3300015371\|Ga0132258_12267083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1362	Open in IMG/M
3300017927\|Ga0187824_10177576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	716	Open in IMG/M
3300019888\|Ga0193751_1134871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	904	Open in IMG/M
3300023056\|Ga0233357_1015814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	865	Open in IMG/M
3300025899\|Ga0207642_10238460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1026	Open in IMG/M
3300025900\|Ga0207710_10152103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1123	Open in IMG/M
3300025903\|Ga0207680_10377916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	998	Open in IMG/M
3300025903\|Ga0207680_10616632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	776	Open in IMG/M
3300025920\|Ga0207649_11568312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	521	Open in IMG/M
3300025924\|Ga0207694_10306683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1308	Open in IMG/M
3300025924\|Ga0207694_10459538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1063	Open in IMG/M
3300025936\|Ga0207670_11251519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	629	Open in IMG/M
3300025940\|Ga0207691_10772492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	808	Open in IMG/M
3300025944\|Ga0207661_10026606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4410	Open in IMG/M
3300025944\|Ga0207661_10261983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1540	Open in IMG/M
3300025945\|Ga0207679_10134201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1991	Open in IMG/M
3300025960\|Ga0207651_12154406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	500	Open in IMG/M
3300025986\|Ga0207658_10028146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3955	Open in IMG/M
3300025986\|Ga0207658_11056042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	741	Open in IMG/M
3300026041\|Ga0207639_10958392	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera	801	Open in IMG/M
3300026089\|Ga0207648_10481391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1134	Open in IMG/M
3300026095\|Ga0207676_10286911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1497	Open in IMG/M
3300026310\|Ga0209239_1206445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	701	Open in IMG/M
3300026538\|Ga0209056_10214292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1397	Open in IMG/M
3300026542\|Ga0209805_1154688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1049	Open in IMG/M
3300027725\|Ga0209178_1269788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	619	Open in IMG/M
3300028381\|Ga0268264_10054677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3334	Open in IMG/M
3300028381\|Ga0268264_10801076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	941	Open in IMG/M
3300028381\|Ga0268264_11515618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	681	Open in IMG/M
3300028587\|Ga0247828_10684851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	636	Open in IMG/M
3300028596\|Ga0247821_11262058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	504	Open in IMG/M
3300028889\|Ga0247827_10574404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	717	Open in IMG/M
3300031572\|Ga0318515_10006020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5103	Open in IMG/M
3300031805\|Ga0318497_10408260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	760	Open in IMG/M
3300031854\|Ga0310904_10212870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1173	Open in IMG/M
3300031858\|Ga0310892_11118511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	559	Open in IMG/M
3300031942\|Ga0310916_10016983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5049	Open in IMG/M
3300032055\|Ga0318575_10043469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2031	Open in IMG/M
3300032179\|Ga0310889_10756848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	510	Open in IMG/M
3300032180\|Ga0307471_101954213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	735	Open in IMG/M
3300033475\|Ga0310811_10524051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1229	Open in IMG/M
3300033475\|Ga0310811_10974128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	748	Open in IMG/M
3300034115\|Ga0364945_0035244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1362	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.50%
Host-Associated	Host-Associated	49.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.50%
Plants	Host-Associated → Plants	49.50%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.82%
Roots	Host-Associated → Plants → Roots	2.97%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.84%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_105862231	3300000443	Soil	MRIWLDPDRLAAYRITVADVEDALRRAIVQIGDVASLVVLIEISLPALKRRVEAGDAVQPAWGNFLSRVSARYGLPSAPRVRPVRTDGPLAMLVVAYRS*
F14TC_1004085051	3300000559	Soil	DVEDALRRAIVQIGDVASLVVLIEISLPALKRRVEAGDAVQPAWGNFLSRVSARYGLPSAPRVRPVRTDGPLAMLVVAYRS*
Ga0063356_1004000741	3300004463	Arabidopsis Thaliana Rhizosphere	RAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0062595_1000576372	3300004479	Soil	MEDTLRRLIVQLGEVAAISVLIELWLPALKRRVDAGDAVQPAWGEFLDRLAQRYGLPAAARVRPLRDDGPLAILVIAYRS*
Ga0065715_105623232	3300005293	Miscanthus Rhizosphere	MEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAVQPAWGEFLDRLAQRYGLPAAARVRPLRDDGPLAILVIAYRS*
Ga0070670_1002142942	3300005331	Switchgrass Rhizosphere	DTLRRAIVQLGDVASIVVLIELSLPALRRRIDAGESIQPGWNRFIARLAERYGLPAPPRVRPHKDAGPLATLVVAYRS*
Ga0070670_1007571672	3300005331	Switchgrass Rhizosphere	LRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0070677_109098311	3300005333	Miscanthus Rhizosphere	LRRAIVQVGDVASIAVMLELSLPALDRRVRAGDRLQPAWAEFVARLADRYGLQRAPRVRPVRGEGPLATLVIAYRS*
Ga0070660_1008742241	3300005339	Corn Rhizosphere	QVGDVSAVAVLIELSLPALKRRVDAGERIQPAWGLFLDRLANRYGLPIPPRVRHVRTAGPLATLVVAYRN*
Ga0070661_1016785712	3300005344	Corn Rhizosphere	DAEDALRRAIVQVGDVASIAVLVELSLPALKRRVVAGDTIQPAWGMFLERLGSRYGLPAAPRVRFVPGAGPLATLVVAYRSLE*
Ga0070669_1005979421	3300005353	Switchgrass Rhizosphere	RAIVQVGDVASIAVHVDLSLPALDRRVRAGERLQPAYAEFVARLGSRYGLQRAPRVRPVRTEGPLATLVVAYRS*
Ga0070667_1000833421	3300005367	Switchgrass Rhizosphere	MEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAIQPAWGEFLDRLAQRYGLPATARVRPLRDDGPLAILVIAYRS*
Ga0070667_1003371582	3300005367	Switchgrass Rhizosphere	IVVLIELSLPALRRRVDAGETIQPAWTRFFERVSERYGLPTPPRVRSHTGAGPLATLVVAYRS*
Ga0070667_1007805821	3300005367	Switchgrass Rhizosphere	VFATCLADAEDALRRAIVQVGDVASIGVLVELSLPALKSRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0070713_1016003731	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AVLVELSLPALKRRVAAGDTIQPAWGMFLERLGSRYGLPAAPRVRLVRGAEPLATLVVAYRSLG*
Ga0070701_102070061	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	DAEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0070708_1003831921	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TCLADMEDALRRAIVQVGDVSSIAVLIEVSLPALKRRVDAGDAIQPEWGQFLERMADRYGLPAPPRVRPLGIEGPLATLVIAYRS*
Ga0066681_105683482	3300005451	Soil	IVQIGDVSSLVVLIEISLPALKRRVEAGDKIQPAWGHFLERVSDRYGLPAAPRARHVRTDGPLAMLIVAYRS*
Ga0070681_102480562	3300005458	Corn Rhizosphere	GPFTACLANLEDALRRALVQVGDVSALAILVELSLPALKARVDAGDAIQPAWGSFLDRLSERYGLPITPRVRHVRDAGPLATLVIAYRS*
Ga0068867_1000474141	3300005459	Miscanthus Rhizosphere	TCLADAEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0068867_1004921191	3300005459	Miscanthus Rhizosphere	ALRRAIVQVGDVASIAVMLELSLPALDRRVRAGDRLQPAWSEFVARLADRYGLQRTPRVRHVRTEGPLATLVIAYRS*
Ga0070707_1016268571	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DAEDTLRRALVMVGDVARIAVLVELSLPALKARFDAGDPVQPAWGRFLESITRYGLPAAPRVRHLRGAGALLTLVIAYRS*
Ga0070679_1021832321	3300005530	Corn Rhizosphere	TCLADAEDALRRAIVQVGDVASIGVLVELSLPALKSRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0066701_104098821	3300005552	Soil	MCLADMEDALRRAIVQVGDVSSIAVLIEVSLPGLKRRVDAGDAIQPEWGQFLERISARYGLPAPPRVRPLGIEAALATLVIAYRS*
Ga0070664_1019261821	3300005564	Corn Rhizosphere	SIVVLIELSLPALRRRVDSGEALQPAWARFVERLSTRYGLPERPRVRMLKGGGPLATLGVAYRS*
Ga0066703_102649471	3300005568	Soil	IVQVGDVSSIAVLIEISLPGLKRRVDAGDAIQPEWGQFLERMSDRYGLPAPPRVRPLGIEGPLATLVIAYRS*
Ga0068859_1004062542	3300005617	Switchgrass Rhizosphere	CLADMEDTLRRAIVQLGDVASIVVLIELSLPALRRRIDAGESIQPGWNRFIARLAERYGLPAPPRVRPHKDAGPLATLVVAYRS*
Ga0068860_1002411743	3300005843	Switchgrass Rhizosphere	DVEDALRRAIVQVGDVASIAVMLELSLPALDRRVRAGDRLQPAWNEFVARLADRYGLQRTPRVRHVRTEGPLATLVIAYRS*
Ga0068860_1009015812	3300005843	Switchgrass Rhizosphere	EDALRRAIVQIGDVSSLVVLIEISLPALKRRVDAGDTVQPAWGQFLARVSERYGLPSAPRVRHVRTDGPLAVLVVAYRS*
Ga0066652_1008599731	3300006046	Soil	PFTTCLADVEDALRRAIVQIGDVSSLVVLIEISLPALKRRVEAGDKIQPAWGHFLERVSDRYGLPAAPRARHVRTDGPLAMLIVAYRS*
Ga0070715_106598772	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	DALRRAIVQVGDVASIAVMLELSLPALDRRVRAGDRLQPAWTEFVARLADRYGLQRTPRVRHVRTEGPLATLVIAYRS*
Ga0068871_1003102382	3300006358	Miscanthus Rhizosphere	DIEDTLRRAIVQLGDVTSIVVLIELSLPALRRCVDAGELIQPAWARFMERLSTRYGLPGPPRVRMLKGAGPLATLVVAYRS*
Ga0066658_105720152	3300006794	Soil	FAMCLADMEDALRRAIVQMGDVSSIAVLIEVSLPGLKRRVDAGDAIQPAWGQFLERMSDRYGLPAPPRVRPLGIQAPLATLVIAYRS*
Ga0079220_109138411	3300006806	Agricultural Soil	RRAIVQVGDVSSIAVLIELSLPALKRRVDAGERVQPAWGHFLDRLANRYGLPVPPRVRHVRAAGPLATLVVAYRN*
Ga0111539_121423312	3300009094	Populus Rhizosphere	ADAEDALRRAIVQVGDVASIAVLVELSLPALKRRVAAGDTIQPAWGMFLERLGSRYGLPAAPRVRYAPGAGPLATLVVAYRSLE*
Ga0099792_102857052	3300009143	Vadose Zone Soil	IVQVGNVASIAVLIEVSLPGLKGRVDGGEAIQPAWGQFLERVADRYGLPAPPRVRPLLSEGPLVTLVIAYRS*
Ga0105248_114606041	3300009177	Switchgrass Rhizosphere	IVQLGDVTSIVVLIELSLPALRRCVDAGEAIQPAWSRLLERLSTRYGLPAPPRVRMLKATGPLATLVLAYRS*
Ga0105248_131921361	3300009177	Switchgrass Rhizosphere	IVVLIELSLPALRRRVEAGESIQPAWTRFLERLAHGYGLPAPPRVRPHKGAGPLATLVVAYRS*
Ga0105238_105993402	3300009551	Corn Rhizosphere	VFVTCLADAEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0126379_127204872	3300010366	Tropical Forest Soil	GDIASIAVLIELSLPALKRRVDAGDVLQPAWTRFLERLSTRYGLQSAPRVRQVRNEGPLATLVVVYRS*
Ga0134125_130000391	3300010371	Terrestrial Soil	RRAIVQLGDIAAIVVLIELSLPALRRRVEAGESIQPAWTRFLERLAQGYGLPAPPRVRPHKGAGPLATLVVAYRS*
Ga0134122_107772631	3300010400	Terrestrial Soil	LRRAIVQLGDIAAIVVLIELSLPALRRRVEAGESIQPAWTRFLERLAQGYGLPAPPRVRPHKGAGPLATLVVAYRS*
Ga0134123_101735821	3300010403	Terrestrial Soil	RRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLRSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0137382_104005502	3300012200	Vadose Zone Soil	EDALRRAIVQVGDVSSIAVLIEISLPGLKRRVDAGDAIQPEWGQFLERMSDRYGLPAPPRVRPLGIEAPLATLVIAYRS*
Ga0137380_103037322	3300012206	Vadose Zone Soil	MCLADMEDALRRAIVQVGDVSSIAVLIEVSLPGLKRRVDAGDAIQPAWGQFLERMSDRYGLPAPPRVRPLGTEGPLATLVIAYRS*
Ga0157328_10040512	3300012478	Arabidopsis Rhizosphere	MRRAIVQVGDVASIGVLVELSLPALKRRVAAGDTIQPAWGLFLERLGSRYGLPTFPRVRHVRHAGPLATLVVAYRSLE*
Ga0157293_103211101	3300012898	Soil	AEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE*
Ga0164298_113800992	3300012955	Soil	MEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAVQPAWGEFLDRLAQRYGLPAAARVRPLRDDGPLALLVIAYRS*
Ga0164302_114267461	3300012961	Soil	MEDTLRRLIVQLGEVAAISVLIELSLPAHKRRVDAGDAIQPAWGEFLDRLAQRYGLPATARVRPLLDDGPLAILVIAYRS*
Ga0157370_117166132	3300013104	Corn Rhizosphere	RRAIVQVGDVSSIAVQIELSLPALKRRVDAGERIQPAWGRFLDRLANRYGLPVPPRVRHVRTAGPLATLVVAYRN*
Ga0157369_108555441	3300013105	Corn Rhizosphere	DLEDALRRAIVQVGDVSSIAVQIELSLPALKRRVDAGERIQPAWGRFLDRLANRYGLPVPPRVRHVRTAGPLATLVVAYRN*
Ga0157374_101110433	3300013296	Miscanthus Rhizosphere	DIEDTLRRAIVQLGDVTSIVVLIELSLPALRRCVDAGESIQPAWARFMERLSTRYGMPGPPRVRMLKGAGPLATLVVAYRS*
Ga0163162_105058142	3300013306	Switchgrass Rhizosphere	LGDVPSIVVLIELSLPALRRRVEAGESIQPAWTRFLERLAQGYGLPAPPRVRPHKGAGPLATLVVAYRS*
Ga0134079_101952512	3300014166	Grasslands Soil	MEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAIQPAWGEFLDRLARRYGLPAAAHVRPLRNDGPLAILVIAYRS*
Ga0163163_100506441	3300014325	Switchgrass Rhizosphere	EDTLRRTIVQVRDVASIVVLIEMSLPALRRRVDAGESVQPAWSEFLKRITHRYGLPAPPRVRPMKGAGPLATLVVAYRS*
Ga0163163_125118451	3300014325	Switchgrass Rhizosphere	ADRRRAIVQLGDVASIAVLIELSLPALRRRVEAGETIQPAWTRFLERVSERYGLPTPPRVRSRTGAGPLATLVVAYRS*
Ga0132258_122670833	3300015371	Arabidopsis Rhizosphere	MHFDQTLDQRQANAQAALRTLRRAIVQLGDVTSIVVLIELSLPALRRCVDAGELIQPAWARFMERLSTRYGLPGPPRVRMLKGAGPLATLVVAYRS*
Ga0187824_101775762	3300017927	Freshwater Sediment	GEVAAISVLIELSLPALKRRVHAGDAIQPAWGEFLDRLARRYGLPAPARVRPLRDDGPLAILVIAYRS
Ga0193751_11348711	3300019888	Soil	ADMEDALRRAIVQVGDVSSIAVLIEVSLPGLKRRVDAGDAIQPEWGQFLERMSDRYGLPAPPRVRPLGIEGPLATLVIAYRS
Ga0233357_10158142	3300023056	Soil	PFATCLADMEDALRRAIVQVGDVSSIAVLIEVSLPGLKRRVDAGDAIQPEWGQFLERMSDRYGLPAPPRVRPLGIEGPLATLVIAYRS
Ga0207642_102384601	3300025899	Miscanthus Rhizosphere	MEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAVQPAWGEFLDRLAQRYGLPAAARVRPLRDDGPLAILVIAY
Ga0207642_110377732	3300025899	Miscanthus Rhizosphere	SIVVLIELSLPALRRRIDAGESNQPGWNRFIARLAERYGLPAPPRVRPHKDAGPLATLVVAYRS
Ga0207710_101521031	3300025900	Switchgrass Rhizosphere	ALADMEDTLRRAIVQLGDVASIAVLIELSLPALRRRVEAGETIQPAWTRFLERVSERYGLPTPPRVRSRTGAGPLATLVVAYRS
Ga0207680_103779162	3300025903	Switchgrass Rhizosphere	DVASIVVLIELSLPALRRRIDAGESIQPGWNRFIARLAERYGLPAPPRVRPHKDAGPLATLVVAYRS
Ga0207680_106166322	3300025903	Switchgrass Rhizosphere	DAEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0207649_115683122	3300025920	Corn Rhizosphere	RAIVQVGDVASIAVLVELSLPALKRRVVAGDTIQPAWGMFLERLGSRYGLPAAPRVRFVPGAGPLATLVVAYRSLE
Ga0207694_103066831	3300025924	Corn Rhizosphere	DGPLATCIADMEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAVQPAWGEFLDRLAQRYGLPAAARVRPLRDDGPLAILVIAYRS
Ga0207694_104595382	3300025924	Corn Rhizosphere	RRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0207670_112515192	3300025936	Switchgrass Rhizosphere	VQVGDIASIVILIELSLPALKRRVEAGDSIQPAWEQFIERLTDRYGLPTPPRARPLTSAGPLATLVLAYRS
Ga0207691_107724922	3300025940	Miscanthus Rhizosphere	DMEDTLRRLIVQLGEVAAISVLIELSLPALKRRVDAGDAVQPAWGEFLDRLAQRYGLPAAARVRPLRDDGPLAILVIAYRS
Ga0207661_100266064	3300025944	Corn Rhizosphere	DGVFATCLADAEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0207661_102619831	3300025944	Corn Rhizosphere	VADIEDTLRRAIVQLGDVTSIVVLIELSLPALRRCVDSGETIQPAWARFVERLSTRYGLPEPPRIRMLKGEGPLATLVIAYRS
Ga0207679_101342011	3300025945	Corn Rhizosphere	PGLRRCVDSGETIQPAWARFVERLSTRYGLPEPPRIRMLKGEGPLATLVIAYRS
Ga0207651_121544061	3300025960	Switchgrass Rhizosphere	AEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0207668_120650362	3300025972	Switchgrass Rhizosphere	VGDVASIAVMLELSLPALDRRVRAGDRLQPAWAEFVARLADRYGLQRAPRVRPVRGEGPLATLVIAYRS
Ga0207658_100281464	3300025986	Switchgrass Rhizosphere	CLADAEDALRRAIVQVGDVASIGVLVELSLPALKSRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0207658_110560421	3300025986	Switchgrass Rhizosphere	GVFVTCLADAEDALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0207639_109583921	3300026041	Corn Rhizosphere	DVTSIVVLIELSLPALRRCVDSGETIQPAWARFVERLSTRYGLPEPPRIRMLKGEGPLATLVIAYRS
Ga0207648_104813911	3300026089	Miscanthus Rhizosphere	ALRRAIVQVGDVASIAVMLELSLPALDRRVRAGDRLQPAWSEFVARLADRYGLQRTPRVRHVRTEGPLATLVIAYRS
Ga0207676_102869111	3300026095	Switchgrass Rhizosphere	ADLEDALRRALVQVGDVASIAVLIELSLPALKRRVEAGDAVQPAWGEFVERVSSRYGLPVAPRVRHVRAAGPLATLVVAYRS
Ga0209239_12064451	3300026310	Grasslands Soil	DMEDALRRAIVQVGDVSSIAVLIEISLPGLKRRVDAGDAIQPEWGQFLERMSDRYGLPAPPRVRPLGIEAPLATLVIAYRS
Ga0209056_102142922	3300026538	Soil	AIVQLGDIAAIAVLIEVSLPALKRRVDAGEAIQPAWGQFLERLSSRYGLPALPRVRPVRNAAPLATLVIAYRS
Ga0209805_11546881	3300026542	Soil	LADMEDALRRAIVQVGDVSSIAVLIEISLPGLKRRVDAGDAIQPEWGQFLERMSDRYGLPAPPRVRPLGIEGPLATLVIAYRS
Ga0209178_12697881	3300027725	Agricultural Soil	TLRRLIVQLGEVAAISVLIELSLPALKRRVHAGDAIQPAWGEFLDRLARRYGLPAPARVRPLRDDGPLAILVIAYRS
Ga0268264_100546774	3300028381	Switchgrass Rhizosphere	RLIVQLGEVAAISVLIELSLPALKRRVDAGDAIQPAWGEFLDRLAQRYGLPATARVRPLRDDGPLAILVIAYRS
Ga0268264_108010761	3300028381	Switchgrass Rhizosphere	IVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0268264_115156182	3300028381	Switchgrass Rhizosphere	DVEDALRRAIVQVGDVASIAVMLELSLPALDRRVRAGDRLQPAWNEFVARLADRYGLQRTPRVRHVRTEGPLATLVIAYRS
Ga0247828_106848511	3300028587	Soil	ALRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0247821_112620582	3300028596	Soil	VQVGDVASIAVLVELSLPALKRRVAAGDTIQPAWGMFLERLGSRYGLPAAPRVRYAPGAGPLATLVVAYRSLE
Ga0247827_105744042	3300028889	Soil	VGDVASIAVLVELSLPALKRRVAAGDTIQPAWGMFLERLGSRYGLPAAPRVRYAPGAGPLATLVVAYRSLE
Ga0318515_100060204	3300031572	Soil	CLGDLEDALRRAIVQVGDIASIAVLIELSLPALKRRVDAGDVLQPAWTRFLERLSTRYGLQSAPRVRQVRNEGPLATLVVVYRS
Ga0318497_104082602	3300031805	Soil	FATCLADLEDALRRALVQVGDVAAIAVLIELSLPALKARIDAGDAIQPAWGRFVERLPVRYGLPSAPRVRPVRTPGPLATLVIAFRS
Ga0310904_102128701	3300031854	Soil	LRRALVQVGDVASIAVLVELSLPALERRIRAGDVLQPAWAQFVRRLATRYGLQRAPRVRHVRTEGPLATLVIAYRS
Ga0310892_111185112	3300031858	Soil	EDALRRAIVQVGDVASVAVMLELSLPALDRRVRAGDRLQPAWAEFVARLADRYGLQRAPRVRPVRGEGPLATLVIAYRS
Ga0310916_100169834	3300031942	Soil	LEDALRRAIVQVGDIASIAVLIELSLPALKRRVDAGDVLQPAWTRFLERLSTRYGLQSAPRVRQVRNEGPLATLVVVYRS
Ga0318575_100434694	3300032055	Soil	IVQVGDIASIAVLIELSLPALKRRVDAGDVLQPAWTRFLERLSTRYGLQSAPRVRQVRNEGPLATLVVVYRS
Ga0310889_107568482	3300032179	Soil	VGDVASIAVLVELSLPALERRIRAGDVLQPAWAQFVRRLATRYGLQRAPRVRHVRTEGPLALLVIAYRS
Ga0307471_1019542131	3300032180	Hardwood Forest Soil	DALRRALVQVGNVSSIALLIELSLPALKHRIEAGDALQPAWSQFLAGLSSRYGLQTPPRVRHLRTEGPLATLVIVYRS
Ga0310811_105240511	3300033475	Soil	DTLRRAIVQLGDVTSIVVLIELSLPALRRCVDSGETIQPAWARFVERLSTRYGLPEPPRIRMLKGEGPLATLVIAYRS
Ga0310811_109741281	3300033475	Soil	LRRAIVQVGDVASIGVLVELSLPALKRRVAAGDAIQPAWGLFLERLGSRYGLPVAPRVRHVRRAGPLATLVVAYRSLE
Ga0364945_0035244_1029_1286	3300034115	Sediment	VCLTDIEDTLRRAIVQLGDVASIVVLIELSLPALRRRVDAGESIQPAWTRFLERLSERYGLPAPPRVRPNKGAGPLATLVVAYRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103944

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences