NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103906

Metagenome Family F103906

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103906
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 54 residues
Representative Sequence MYRNVVYNGRESTVTLFTWDQDGKRISTECSFEPYLYVEDNRGDKTSIFGTKVKK
Number of Associated Samples 89
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 13.86 %
% of genes near scaffold ends (potentially truncated) 98.02 %
% of genes from short scaffolds (< 2000 bps) 88.12 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.040 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(42.574 % of family members)
Environment Ontology (ENVO) Unclassified
(83.168 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.158 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 30.12%    Coil/Unstructured: 69.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF13692Glyco_trans_1_4 14.85
PF13476AAA_23 2.97
PF03104DNA_pol_B_exo1 0.99
PF04851ResIII 0.99
PF04542Sigma70_r2 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0417DNA polymerase B elongation subunitReplication, recombination and repair [L] 0.99
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.99
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.99
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.99
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.04 %
All OrganismsrootAll Organisms3.96 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000949|BBAY94_10049719Not Available1165Open in IMG/M
3300001718|JGI24523J20078_1000276Not Available11225Open in IMG/M
3300001938|GOS2221_1004953Not Available3474Open in IMG/M
3300002488|JGI25128J35275_1042624Not Available1010Open in IMG/M
3300002514|JGI25133J35611_10057604Not Available1276Open in IMG/M
3300003495|JGI26244J51143_1006599All Organisms → Viruses → Predicted Viral3015Open in IMG/M
3300005239|Ga0073579_1381402Not Available798Open in IMG/M
3300005239|Ga0073579_1421548Not Available804Open in IMG/M
3300005400|Ga0066867_10236937Not Available662Open in IMG/M
3300005593|Ga0066837_10183872Not Available750Open in IMG/M
3300006164|Ga0075441_10050303Not Available1655Open in IMG/M
3300006735|Ga0098038_1273239Not Available529Open in IMG/M
3300006736|Ga0098033_1036529Not Available1472Open in IMG/M
3300006750|Ga0098058_1084185Not Available869Open in IMG/M
3300006753|Ga0098039_1072194Not Available1197Open in IMG/M
3300006754|Ga0098044_1146490Not Available948Open in IMG/M
3300006810|Ga0070754_10225197Not Available865Open in IMG/M
3300006921|Ga0098060_1020947Not Available2031Open in IMG/M
3300006921|Ga0098060_1124003Not Available724Open in IMG/M
3300006923|Ga0098053_1028663Not Available1187Open in IMG/M
3300006923|Ga0098053_1060843Not Available773Open in IMG/M
3300006924|Ga0098051_1202801Not Available518Open in IMG/M
3300006926|Ga0098057_1188869Not Available503Open in IMG/M
3300006947|Ga0075444_10082707Not Available1437Open in IMG/M
3300007229|Ga0075468_10009487Not Available3850Open in IMG/M
3300007231|Ga0075469_10122156Not Available721Open in IMG/M
3300007344|Ga0070745_1030188Not Available2333Open in IMG/M
3300007539|Ga0099849_1240567Not Available668Open in IMG/M
3300008219|Ga0114905_1149714Not Available779Open in IMG/M
3300009079|Ga0102814_10372611Not Available777Open in IMG/M
3300009086|Ga0102812_10472298Not Available684Open in IMG/M
3300009414|Ga0114909_1139939Not Available643Open in IMG/M
3300009418|Ga0114908_1089390Not Available1043Open in IMG/M
3300009418|Ga0114908_1100666Not Available967Open in IMG/M
3300009420|Ga0114994_10050452Not Available2874Open in IMG/M
3300009481|Ga0114932_10533754Not Available689Open in IMG/M
3300009785|Ga0115001_10055661All Organisms → Viruses → Predicted Viral2602Open in IMG/M
3300009790|Ga0115012_10587820Not Available880Open in IMG/M
3300010149|Ga0098049_1000963Not Available11176Open in IMG/M
3300010150|Ga0098056_1133174Not Available842Open in IMG/M
3300010150|Ga0098056_1162702Not Available751Open in IMG/M
3300010151|Ga0098061_1205627Not Available697Open in IMG/M
3300010151|Ga0098061_1237784All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Coxiellaceae → unclassified Coxiellaceae → Coxiellaceae bacterium637Open in IMG/M
3300010153|Ga0098059_1391754Not Available525Open in IMG/M
3300010934|Ga0137844_1011533Not Available2060Open in IMG/M
3300011013|Ga0114934_10306545Not Available715Open in IMG/M
3300012936|Ga0163109_10702580Not Available739Open in IMG/M
3300017704|Ga0181371_1088822Not Available500Open in IMG/M
3300017705|Ga0181372_1048465Not Available717Open in IMG/M
3300017717|Ga0181404_1094365Not Available735Open in IMG/M
3300017717|Ga0181404_1125031Not Available627Open in IMG/M
3300017719|Ga0181390_1025206Not Available1907Open in IMG/M
3300017748|Ga0181393_1040484Not Available1298Open in IMG/M
3300017752|Ga0181400_1047943Not Available1330Open in IMG/M
3300017752|Ga0181400_1065603Not Available1101Open in IMG/M
3300017779|Ga0181395_1141427Not Available760Open in IMG/M
3300020438|Ga0211576_10368752Not Available738Open in IMG/M
3300021085|Ga0206677_10240024Not Available754Open in IMG/M
3300021960|Ga0222715_10226290Not Available1102Open in IMG/M
3300022072|Ga0196889_1074130Not Available639Open in IMG/M
3300022183|Ga0196891_1041681Not Available847Open in IMG/M
3300022227|Ga0187827_10566977Not Available668Open in IMG/M
(restricted) 3300023112|Ga0233411_10268378Not Available570Open in IMG/M
3300024231|Ga0233399_1141865Not Available517Open in IMG/M
3300024244|Ga0228678_1124866Not Available501Open in IMG/M
(restricted) 3300024259|Ga0233437_1295021Not Available632Open in IMG/M
3300024266|Ga0228661_1071741Not Available645Open in IMG/M
3300025066|Ga0208012_1018841Not Available1131Open in IMG/M
3300025066|Ga0208012_1059954Not Available544Open in IMG/M
3300025072|Ga0208920_1026919Not Available1217Open in IMG/M
3300025079|Ga0207890_1034045Not Available920Open in IMG/M
3300025096|Ga0208011_1004154Not Available4486Open in IMG/M
3300025099|Ga0208669_1123589Not Available523Open in IMG/M
3300025102|Ga0208666_1112337Not Available656Open in IMG/M
3300025103|Ga0208013_1023670Not Available1802Open in IMG/M
3300025125|Ga0209644_1040719Not Available1051Open in IMG/M
3300025131|Ga0209128_1040069Not Available1806Open in IMG/M
3300025132|Ga0209232_1219142Not Available569Open in IMG/M
3300025137|Ga0209336_10155859Not Available601Open in IMG/M
3300025268|Ga0207894_1074202Not Available580Open in IMG/M
3300025840|Ga0208917_1078225Not Available1247Open in IMG/M
3300025873|Ga0209757_10039205Not Available1371Open in IMG/M
3300025873|Ga0209757_10287380Not Available523Open in IMG/M
3300025880|Ga0209534_10236161Not Available885Open in IMG/M
3300026505|Ga0228647_1063450Not Available914Open in IMG/M
3300027501|Ga0208948_1107186Not Available534Open in IMG/M
3300027753|Ga0208305_10191188Not Available739Open in IMG/M
3300027788|Ga0209711_10164957Not Available1050Open in IMG/M
3300027791|Ga0209830_10135203Not Available1194Open in IMG/M
(restricted) 3300027861|Ga0233415_10002792Not Available7371Open in IMG/M
(restricted) 3300027861|Ga0233415_10599195Not Available537Open in IMG/M
3300028022|Ga0256382_1037351Not Available1103Open in IMG/M
3300029787|Ga0183757_1064119Not Available575Open in IMG/M
3300031519|Ga0307488_10762366Not Available540Open in IMG/M
3300031602|Ga0307993_1052153All Organisms → Viruses → Predicted Viral1028Open in IMG/M
3300031658|Ga0307984_1083511Not Available946Open in IMG/M
3300031774|Ga0315331_10484412Not Available897Open in IMG/M
3300031774|Ga0315331_10588993Not Available797Open in IMG/M
3300032048|Ga0315329_10413499Not Available719Open in IMG/M
3300032373|Ga0316204_10582263Not Available824Open in IMG/M
3300034375|Ga0348336_180726Not Available588Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine42.57%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.91%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.93%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean4.95%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.96%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.96%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.96%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.97%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.97%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.98%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface1.98%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.99%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.99%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.99%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.99%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.99%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.99%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.99%
Subsea Pool Microbial MatEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat0.99%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300001718Marine viral communities from the Pacific Ocean - LP-48EnvironmentalOpen in IMG/M
3300001938Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005EnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300003495Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNAEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005593Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86EnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006923Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006926Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009414Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010934Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3EnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300017704Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaGEnvironmentalOpen in IMG/M
3300017705Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaGEnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024244Seawater microbial communities from Monterey Bay, California, United States - 125D_rEnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300024266Seawater microbial communities from Monterey Bay, California, United States - 75DEnvironmentalOpen in IMG/M
3300025066Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025079Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025268Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300027501Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028022Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750mEnvironmentalOpen in IMG/M
3300029787Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032373Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BBAY94_1004971913300000949Macroalgal SurfaceMYRNVVYNGREGTVTEFAWNADGDRVRREVSFEPY
JGI24523J20078_1000276133300001718MarineMSYRNVIYNNRESVITIFTWDEDGNRISYNSSFEPYLYTEDPRGDKTSIYGTKLKKKKFNNSYNEADS*
GOS2221_100495333300001938MarineMYRNAIYNHRESTVSLFTWNEDGERVVVESTFEPYLYVEDPRGDKTSIYGTKLKKRVFSNSYKRGQFCLMQC*
JGI25128J35275_104262423300002488MarineMSYRNVVYNGRNRSVNLFTWDTDGKRVMHECSFEPYLYIENPAGEKTS
JGI25133J35611_1005760413300002514MarineMSYRNVVYNGRQGCINLFTWDNEGKRVMRECTFEPYLYVEDNRGTKTSIFGTKLKKRTFNNAYN
JGI26244J51143_100659913300003495MarineMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYLYVEDP
Ga0073579_138140223300005239MarineMYRNVVYNGREGTVTLFGWNENGDRIRRECSFEPYLYTEDPRGDKTSI
Ga0073579_142154823300005239MarineMYRNVVYNGREGTVTLFGWSETGDRTRRECSFEPYLYTEDPRGDKTSI
Ga0066867_1023693723300005400MarineMSYRNVVYNGRNRCVNLFTWDTDGKRVMHECSFEPYLYLENTAGEKTSIYGTKV
Ga0066837_1018387213300005593MarineMSYRNVVYNGRNRCVNLFTWDTDGKRVIHECSFEPYLYLENTAGE
Ga0075441_1005030333300006164MarineMSYRNVVYNNRDQCINLFTWDEDGKRVMHTCSFEPYLYVEDNRGDKTSIYGTRVK
Ga0098038_127323913300006735MarineMYRNVVYNGREGTITEFAWCPDGNRIRREVSFEPYLY
Ga0098033_103652933300006736MarineMSYRNVVYNGRQGCINLFTWDNEGKRVMRECTFEPYLYVEDNHGTKTSIFGTKLKKRAFNNAYNRSRFLN
Ga0098058_108418523300006750MarineMSYRNVVYNGRQGCINLFTWDSEGKRVMRECTFEPYLYVEDNRGTKTSIFGTKLKKR
Ga0098039_107219413300006753MarineMSYRNVVYNGRQGCINLFTWDSEGKRVMRECTFEPYLYVEDNRGTKTSIF
Ga0098044_114649023300006754MarineMSYRNVVYNNRDQCINLFTWDQDGKRVMHTCSFEPYLYVEDNRGDKTSIYGTRVKKKKFNNRFNRSRFLS
Ga0070754_1022519723300006810AqueousMYRNVVYNGREGTVTEFAWNADGDRVRREVSFEPYLYVEDPRGDKTSIFGTKVKKRSFQNGYG
Ga0098060_102094733300006921MarineMYRNVVYNGRESTVTLFTWDQDGKRISTECSFEPYLYVEDNRGDKTSIFG
Ga0098060_112400323300006921MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMHECSFEPYLYVENTAGDKTSIYGTKVSKRKFNTSYDR
Ga0098053_102866313300006923MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMNECSFEPYLYIESAVGDKTSI
Ga0098053_106084313300006923MarineMYRNVVYNGREGTITEFAWNEHGDRVRREVSFEPYLYVEDPQGDKTSIFGTKVKKRSFQNGYGRYKFL
Ga0098051_120280123300006924MarineMSYRNVVYNNRDQCINLFTWDKDGNRVMHTCSFEPYLYVEDNRGDKTSIYGTKVKKKKFNNR
Ga0098057_118886913300006926MarineMYRNVVYNGRESTVTLFTWDQDGKRISTECSFEPYLYVEDNRGDKTS
Ga0075444_1008270723300006947MarineMYRNVVYNGREGTVTLFGWDKDGNRTRGESSFEPYLYTEDTRGDKTSIFGTKVKKRTFNTGYDRYK
Ga0075468_1000948743300007229AqueousMYRNAVYNGSNQTVTLFTWDENGDRVVREATCEPYLYVEDPRGDKTSIY
Ga0075469_1012215623300007231AqueousMYRNAVYNGSNQTVTLFTWDENGDRVVREATCEPYLYVEDPRGDKTSIYDTKIRKRSFRNSYERNKFV
Ga0070745_103018813300007344AqueousMYRNVVYNSREGTVTLFGWNEAGDRIRRECTFEPYLYTED
Ga0099849_124056723300007539AqueousMYRNVVYNGREGTITEFAWSEEGDRIRREVSFEPYLYVEDPRGEKTSIFGTKVKKRSFQNGYGRY
Ga0114905_114971423300008219Deep OceanMSYRNVVYNNRDQCINLFTWDQDGKRVMHTCSFEPYLYVEDNRGDKTSIYGTKV
Ga0102814_1037261123300009079EstuarineMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYLYVEDPRGDKTSIFG
Ga0102812_1047229813300009086EstuarineMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYLYVEDPRGDKTSIFGTKVKKRS
Ga0114909_113993913300009414Deep OceanMAYRNVVYNGRNRCVNLFTWDNDGKRVMHECSFEPYLYLENTGGDKTSIYG
Ga0114908_108939013300009418Deep OceanMSYRNVVYNNRDQCVNLFTWDEDGNRVMHTCSFEPYLYLEDNRGDKTSIYGTKV
Ga0114908_110066613300009418Deep OceanMSYRNVVYNGRNRCVHLFTWDKDGNRVVNTCSFEPYLYLENTTGDKTSIY
Ga0114994_1005045233300009420MarineMYRNVVYNGRDQSITLFGWDKDGNRTRHECTFEPYLYVEDPRGDKTSIFGTKVKKR
Ga0114932_1053375423300009481Deep SubsurfaceMSYRNVVYNGRNRSVNLFTWDTDGKRVIHECSFEPYLYLENPSGSKTSIYGTKVRQRKFNTSY
Ga0115001_1005566133300009785MarineMSYRNVIYNNRESVITLFTWDEDGNRVSYNSSFEPYLYTEDPRGDKTSIFGTKLKKKKFSNSYNRSRFLTD
Ga0115012_1058782023300009790MarineMSYRNVVYNGRNRCVNLFTWDTDGKRVMHECSFEPYLYLENNGGDKTSIYGTKVRKRK
Ga0098049_100096313300010149MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMHECSFEPYLYVENATGDKTSIYGTKVTKRKFNTSFDRS
Ga0098056_113317423300010150MarineMSYRNVVYNNRDQCVNLFTWDEDGNRVMHTCSFEPYLYLEDNRGDKTSIYGTK
Ga0098056_116270223300010150MarineMYRNVVYNGREGTITEFAWNEDGDRVRREVSFEPYLYVEDPRGEKTSIFGTKVKKRAFQNGYGR
Ga0098061_120562713300010151MarineMYRNVVYNGREGTITEFAWSEDGDRIRREVSFEPYLYVEDPRGEKTSIFGTKVKKRSFQNGYGRYK
Ga0098061_123778423300010151MarineMSYRNVVYNGRDRCVNLFTWDKDGKRVMHECSFEPYLYLENATGNKTSIYGTRVKKRKFNTSYDRSRFVRDSNI
Ga0098059_139175413300010153MarineMSYRNVVYDGRRGCVNLFTWDGEGKRVMHECSFEPYLYVEDNRGDKTSIFGTKVKKKSFHNAYN
Ga0137844_101153333300010934Subsea Pool Microbial MatMSYRNVVYNGRNRSVNLFTWDTDGKRVMHECSFEPYLYIENPSGDKTSIYGTKVRKRKFNTS
Ga0114934_1030654523300011013Deep SubsurfaceMSYRNVVYNGRNRCVNLFTWDKDGKRVMHECSFEPYLYVENATGDKTSIYGTKVSKRKFNTSFD
Ga0163109_1070258023300012936Surface SeawaterMSYRNVVYDGRNRCVNLFTWDTDGKRVMHECSFEPYLYLENTSG
Ga0181371_108882223300017704MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMNECSFEPYLYIESAVGDKTSIYGTKVKKRK
Ga0181372_104846523300017705MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMHECSFEPYLYLESGSGDKTSIYGTKVKK
Ga0181404_109436513300017717SeawaterMYRNVVYNGRESTVTLFTWDKDGKRISTECSFEPYLYVEDNRGEKTS
Ga0181404_112503123300017717SeawaterMYRNVVYNGREGTVTLFGWSETGDRIRRECSFEPYLYTEDPRGEKTSIFGTKVKK
Ga0181390_102520613300017719SeawaterMSYRNVIYNNRESVITLFTWDEDGNRISYNSSFEPYLYTEDPRGDKTSIYGTKLKKKKFNNSYNRSR
Ga0181393_104048423300017748SeawaterMYRNVVYNGRESTVTLFTWDQDGKRISTECSFEPYLYLEDN
Ga0181400_104794313300017752SeawaterMYRNVVYNGREGTVTLFGWSETGDRIRRECSFEPYL
Ga0181400_106560313300017752SeawaterMSYRNIVYNSRDGAVSLFGWDESGNRVVHTASFEPYLYVEDPRGDKTSIFGTKVHKRTFNTAYNRSRFVSDSG
Ga0181395_114142723300017779SeawaterMSYRNVIYNNRESVITLFTWDEDGNRISYNSSFEPYLYTEDPRGDKTSIYGTKLKKKKF
Ga0211576_1036875223300020438MarineMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYLYVED
Ga0206677_1024002423300021085SeawaterMYRNVVYNGREGTITEFAWNEDGDRVRREVSFEPYLYVEDP
Ga0222715_1022629023300021960Estuarine WaterMYRNVVYNGREGTVTEFAWNEDGDRVRREVSFEPYLYVEDPRGDKTSIFGTKVKKRSFQNGYG
Ga0196889_107413023300022072AqueousMSYRNIVYNSREGICSLFCWDEDGNRIVRTASFEPYLYVEDPRGDKTSIYGTKVIKRSFDNIFNRNKFLQDSGVK
Ga0196891_104168113300022183AqueousMYRNVVYNGREGTVTLFGWNENGDRIRRECSFEPYLY
Ga0187827_1056697713300022227SeawaterMSYRNIVYNGRDRCVNLFTWDKDGKRVMHECSFEPYLYLENNAGEKTS
(restricted) Ga0233411_1026837823300023112SeawaterMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYL
Ga0233399_114186523300024231SeawaterMSYRNVVYNSREGTCTIFTWDQDGNRVSHTTTFEPYLYVEDPRGSETSIYGTKVLKRSFN
Ga0228678_112486623300024244SeawaterMSYRNVVYNSREGTCTIFTWDQDGNRVSHTTTFEPYLYVEDPRGNETSIYGTKVLK
(restricted) Ga0233437_129502113300024259SeawaterMYRNVVYNGREGTITEFAWNEHGDRVRREVSFEPYLYVEDPRGEKTSIFGTKVKKRAFQNGYGRYKFL
Ga0228661_107174113300024266SeawaterMSYRNVVYNSREGTCTIFTWDQDGNRVSHTTTFEPYLYVEDPRGSE
Ga0208012_101884113300025066MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMNECSFEPY
Ga0208012_105995423300025066MarineMSYRNVVYNGRNRCVNLFTWDEDGKRVMNECSFEPYLYLEN
Ga0208920_102691913300025072MarineMSYRNVVYNGRQGCINLFTWDSEGKRVMRECTFEPYLYVEDNRGTKTSIFGTKLKKRT
Ga0207890_103404513300025079MarineMYRNVVYNGRESTVTLFTWDQDGKRISTECSFEPYLYVEDNRGDKTSIFGTKVKK
Ga0208011_100415453300025096MarineMSYRNVVYNGRQGCINLFTWDSEGKRVMRECTFEPYLYVEDNRGTKTSIFGTKLKK
Ga0208669_112358923300025099MarineMSYRNVVYNGRNRSVNLFTWDTDGKRVMHECSFEPYLYIENPAGE
Ga0208666_111233713300025102MarineMSYRNVVYNGRNRCVNLFTWDTDGKRVMHECSFEPYLYLENTSGDKTSIYGTKLRKRKFN
Ga0208013_102367013300025103MarineMSYRNVVYNGRNRCVHLFTWDEDGNRVVNTCSFEPYLYLENTTGDKTSI
Ga0209644_104071913300025125MarineMSYRNVVYNGRNRCVNLFTWDEDGRRIMRECSFEPYLYIENNTGEKTSIYGTKVKKRKFNTSYDRARFVRECN
Ga0209128_104006933300025131MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMHECSFEPYLYVENAA
Ga0209232_121914213300025132MarineMSYRNVVYNGRNRSVNLFTWDTEGKRVMHECSFEPYLYLENATGEKTSIYGTSVKKRKFN
Ga0209336_1015585923300025137MarineMYRNVVYNGRESTVTLFTWDQDGKRISTECSFEPYLYVEDNRGDKTSIF
Ga0207894_107420223300025268Deep OceanMSYRNVVYNGRQGCINLFTWDSEGKRVMRECTFEPYLYVEDNRGTKTSIFGTKLKKRTFN
Ga0208917_107822523300025840AqueousMYRNVVYNSREGTVTLFGWNEAGDRIRRECTFEPYLYTEDPRGDK
Ga0209757_1003920523300025873MarineMSYRNVVYNGRNRCVNLFTWDKDGKRVMHECSFEPYLYLENSAGEQTSIYGTKVKKRKFN
Ga0209757_1028738023300025873MarineMSYRNVVYNGRNRCVNLFTWDEDGRRIMRECSFEPYLYIE
Ga0209534_1023616123300025880Pelagic MarineMYRNAIYNHRESTVSLFTWNDAGERIVVESTFEPYLYVEDPRGDKTSIYGTKV
Ga0228647_106345013300026505SeawaterMSYRNIVYNSRDGAVSLFGWDESGNRVVHTASFEPYLYVEDPRGDKTSIFGTKVHKRTF
Ga0208948_110718613300027501MarineMYRNVVYNGREGTITEFAWNEDGDRVRREVSFEPYLYVEDPRGEKTSIFGTKVKKRAF
Ga0208305_1019118813300027753EstuarineMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYLYVEDPRGDK
Ga0209711_1016495713300027788MarineMYRNVVYNGRDQSITLFGWDKDGNRTRHECTFEPYLYVE
Ga0209830_1013520323300027791MarineMYRNVVYNGRDQSITLFGWDKDGNRTRHECTFEPYLYVED
(restricted) Ga0233415_1000279213300027861SeawaterVSYRNAIYNGREGTVTLFTWDEEGNRVRFETSVEPYL
(restricted) Ga0233415_1059919523300027861SeawaterMSYRNVIYNNRESVITLFTWDEDGNRISYNSSFEPYLYTEDPRGDKTSIYGTKLKKKKFNNSYN
Ga0256382_103735113300028022SeawaterMSYRNVVYNGRNRSVNLFTWDTDGKRVMHECSFEPYLYLENPSGSKTSI
Ga0183757_106411923300029787MarineMYRNVVYNGREGTVTLFGWNENGDRIRRECSFEPYLYTEDPRGEKTSIFGTKVKKRSFN
Ga0307488_1076236623300031519Sackhole BrineMYRNAVYNGREGTVTLFGWDKDGNRTRGECSFEPYLYTEDPRGEKTSIF
Ga0307993_105215313300031602MarineMYRNVVYNGREGTVTLFGWDKDGNRTRGESSFEPYLYTED
Ga0307984_108351113300031658MarineMYRNVVYNGREGTVTLFGWDKDGNRTRGESSFEPYLYTEDPRGEKTSIF
Ga0315331_1048441213300031774SeawaterMYRNVVYNGREGTITEFAWSEDGDRIRREVSFEPYLYVED
Ga0315331_1058899323300031774SeawaterMYRNVVYNGREGTITEFAWNEHGDRVRREVSFEPYLYVEDPRGEKTSIFGTKVKKRSFQNGYGRYK
Ga0315329_1041349923300032048SeawaterMSYRNVVYNGRNRCVHLFTWDEDGNRVVNTCSFEPYLYLENTTGDKTSIYGT
Ga0316204_1058226313300032373Microbial MatMYRNVVYNGRDQSITLFGWNENGDRTRHECTFEPYLYVEDPRGDKTSIF
Ga0348336_180726_423_5873300034375AqueousMYRNVVYNGREGTVTLFGWNENGDRIRRECSFEPYLYTEDPRGDKTSIFGTKVKK


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