Metagenome / Metatranscriptome Family F103852

Basic Information
Family ID	F103852
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	42 residues
Representative Sequence	GAIEVHTFDGLPEHRMVPSPSQPETMRAIDTITDFIRRQTA
Number of Associated Samples	96
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	2.97 %
% of genes from short scaffolds (< 2000 bps)	1.98 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (99.010 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.871 % of family members)
Environment Ontology (ENVO)	Unclassified (32.673 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.614 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.09% β-sheet: 0.00% Coil/Unstructured: 73.91%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF09084	NMT1	21.78
PF01594	AI-2E_transport	4.95
PF03401	TctC	3.96
PF01568	Molydop_binding	2.97
PF07883	Cupin_2	1.98
PF00211	Guanylate_cyc	1.98
PF01717	Meth_synt_2	1.98
PF05977	MFS_3	1.98
PF12695	Abhydrolase_5	1.98
PF03358	FMN_red	0.99
PF01257	2Fe-2S_thioredx	0.99
PF01206	TusA	0.99
PF01972	SDH_sah	0.99
PF01510	Amidase_2	0.99
PF00296	Bac_luciferase	0.99
PF09242	FCSD-flav_bind	0.99
PF08299	Bac_DnaA_C	0.99
PF07969	Amidohydro_3	0.99
PF04191	PEMT	0.99
PF02541	Ppx-GppA	0.99
PF01738	DLH	0.99
PF05706	CDKN3	0.99
PF02775	TPP_enzyme_C	0.99
PF02423	OCD_Mu_crystall	0.99
PF10589	NADH_4Fe-4S	0.99
PF13432	TPR_16	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	21.78
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	21.78
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	4.95
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.96
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	1.98
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.98
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.98
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.98
COG0425	Sulfur carrier protein TusA (tRNA thiolation, molybdenum cofactor biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.99
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.99
COG1905	NADH:ubiquinone oxidoreductase 24 kD subunit (chain E)	Energy production and conversion [C]	0.99
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.99
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
All Organisms	root	All Organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
cellular organisms	root	All Organisms → cellular organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Scaffold	Taxonomy	Length	IMG/M Link
3300006865\|Ga0073934_10279228	Not Available	1079	Open in IMG/M
3300009156\|Ga0111538_11204766	Not Available	957	Open in IMG/M
3300014311\|Ga0075322_1004192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.26%
Host-Associated	Host-Associated	25.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.48%
Plants	Host-Associated → Plants	25.74%
Aquatic	Environmental → Aquatic	21.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.80%
Sediment	Environmental → Aquatic → Sediment	11.88%
Freshwater	Environmental → Aquatic → Freshwater	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.94%
Marine	Environmental → Aquatic → Marine	1.98%
Floodplain	Environmental → Terrestrial → Floodplain	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.99%
Cave	Environmental → Terrestrial → Cave	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.91%
Loam	Environmental → Terrestrial → Soil → Loam	6.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.95%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.98%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.98%
Lake	Environmental → Aquatic → Freshwater → Lake	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.99%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.99%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.99%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.95%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.98%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.98%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.99%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.99%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.99%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.99%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004047	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014306	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1	Environmental	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026018	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C687J26631_102270401	3300002124	Soil	RGGTIEAQTFDGLPEHRMVPSPTQPETMRAIETITAFIRRQTG*
Ga0055440_100608661	3300004020	Natural And Restored Wetlands	ASYRKRGGVIEVHSFDGLPEHRMVPSPSQPESMRFIETVSAFIRQKAG*
Ga0055499_100126441	3300004047	Natural And Restored Wetlands	KRGGVIEVHSFDGLPEHRMAPSPSQPESMRFIDTVSAFIRQKTG*
Ga0066678_109040941	3300005181	Soil	AIEVQTFDGLPEHRMVPSPSQPETMRVIDTITAFIRRHTA*
Ga0065707_107507651	3300005295	Switchgrass Rhizosphere	RGGQIEVHTFEGLPEHRMVPSRAQPETMRAMDTIAEFIRRQT*
Ga0070670_1003636362	3300005331	Switchgrass Rhizosphere	KRGGQIEVHTFEGLPEHRMVPSRAQPETMRAMDTIAEFIRRQT*
Ga0070671_1003995322	3300005355	Switchgrass Rhizosphere	YRKRGGQIEVHTFEGLPEHRMVPSRAQPETMRAIDTIAEFIRRQT*
Ga0066682_107875552	3300005450	Soil	GAIEVHTFDGLPEHRMVPSPSQPETMRAIDTITDFIRRQTA*
Ga0070685_106547813	3300005466	Switchgrass Rhizosphere	IASYRKRGGTIEVHTFAGLPEHRMVPALNQPETMRVIDTIIGFIGRQNR*
Ga0070665_1009803102	3300005548	Switchgrass Rhizosphere	EVHTFEGLPEHRVVPSPAQPETMRAMDTITGFIERQTS*
Ga0066698_100386601	3300005558	Soil	IEVQTFDGLPEHRMVPSPSQPETMRVIDTITAFIRRHTA*
Ga0070702_1018510382	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	GAIEVHTFDGLPEHRMVPSPDKPETLRFVDIVTEFVRRHS*
Ga0066905_1010936811	3300005713	Tropical Forest Soil	RGGAIEVHTFDGLPEHRMVPSPSQPDTMRVIDTTTTFIRRHSK*
Ga0066905_1013973791	3300005713	Tropical Forest Soil	VHTFDGLPEHRMVPSPSQPDTMRVIDTMTAFIRRHSK*
Ga0066905_1014468651	3300005713	Tropical Forest Soil	FDGLPEHRMVPSPAQPETMRAIDTIAAFIRRHTG*
Ga0066903_1038762061	3300005764	Tropical Forest Soil	VQTFEGLPEHRMVPSPAQPETMRAMDTITDFIKRQTA*
Ga0082029_15771472	3300006169	Termite Nest	EVHTFDALPEHRVVPSPSQPETMRLIDTITEFISRKAR*
Ga0075427_100950482	3300006194	Populus Rhizosphere	RFIASYRKRGGVLEDHTFEGLPEHRMVPSPDNPETMRFVDIVTAFIRRQS*
Ga0075430_1000507854	3300006846	Populus Rhizosphere	HTFEGLPEHRMVPSPDNPETMRFVDIVTAFIRRQS*
Ga0075433_104270341	3300006852	Populus Rhizosphere	KRGGQIEVHTFEGLPEHRMVPSRAQPETMRAMDIIAEFIRRQT*
Ga0075420_1003741262	3300006853	Populus Rhizosphere	FDALPEHRVVPSPSQPDTMRLIDTIAEFISRKAR*
Ga0073934_102792282	3300006865	Hot Spring Sediment	RSYRERGGAIEEHTFAGLSEHRIVPSPTMPETMRLIQAVTAFIRRQSGSLLC*
Ga0075424_1001651251	3300006904	Populus Rhizosphere	RGGQIEVHTFEGLPEHRVVPSPAQPETMRAMDIITGFIERQTA*
Ga0075424_1014276981	3300006904	Populus Rhizosphere	GTNEVHTFEGLPEHRMVPSPSEPETMRCIDVMTEFIHRQSR*
Ga0075419_101558782	3300006969	Populus Rhizosphere	GGVLEDHTFEGLPEHRMVPSPDNPETMRFVDIVTAFIRRQS*
Ga0075435_1000437821	3300007076	Populus Rhizosphere	ASYRKRGGAIEADTFDGLPEHRIVPSPEKPETMRFVDAIAAFIRRHGA*
Ga0099791_102352141	3300007255	Vadose Zone Soil	TFEGLPEHRMVPSPDNPETMRFIDIVTAFIRRQTA*
Ga0105107_111447462	3300009087	Freshwater Sediment	GAIEVHAFDGLPDPRMVPSPEQPETMRFIDIVSAFISAKA*
Ga0111539_123846791	3300009094	Populus Rhizosphere	IEVHTFEGLPEHRMVSSRAQPETMRAMDIIAEFIRRQT*
Ga0075418_119772541	3300009100	Populus Rhizosphere	FDGLPEHRMVPSPSQPDTMRAIDTITAFIRRQTG*
Ga0114129_105684553	3300009147	Populus Rhizosphere	IEVHTFDGLPEHRMVPSPSEPETMRVIDTITAFIRRQAG*
Ga0111538_112047661	3300009156	Populus Rhizosphere	RFIASYRKRGGVLEEHTFEGLPEHRMVPSPDNPETMRFIDIVTAFIRRQTR*
Ga0105248_107978992	3300009177	Switchgrass Rhizosphere	SYRKRGGQIEVHTFEGLPEHRVVPSPAQPETMREMDIITGFIERQTA*
Ga0105237_117574601	3300009545	Corn Rhizosphere	GQIEVHTFEGLPEHRVVPSPAQPETMRAMDTITGFIERQTS*
Ga0126374_114732502	3300009792	Tropical Forest Soil	IEVDTFDGLPEHRIVPSPDKPETMRFVDAITAFIRWHA*
Ga0126382_123444882	3300010047	Tropical Forest Soil	ASYRKCGGAIEVHTFDGLPEHRMVPSPDQPDTMRCMETITTFIRRYS*
Ga0126377_123396472	3300010362	Tropical Forest Soil	IASYRKRGGAIEVHTFDGLPEHRMVPSPSQPDTMRVIDTMTAFIRRHNK*
Ga0137452_10352831	3300011441	Soil	KRGGPIEVHTFNGLPEHRMVPSPIEPETMRFIDIVSTFIWRQTK*
Ga0137437_11830462	3300011442	Soil	RGGAIEVHTFDGLPEHRMVPSPSEPETMRFIDTVSAFIGRQNK*
Ga0137319_10976062	3300012167	Soil	EVHTFDGLPEHQMVPSPAQPETMRAMETMTTFIRRQTG*
Ga0137382_111977971	3300012200	Vadose Zone Soil	QTFDGLPEHRMVPSTSQPETMRAIDTITTFIRCQTE*
Ga0137362_111213152	3300012205	Vadose Zone Soil	AIEVHTFDGLPEHRMVPSPSQPETMRAIDTITDFIRRQTA*
Ga0137378_107346741	3300012210	Vadose Zone Soil	SYRKRGGAIEVQTFDGLPEHRMVPSSSQPETMRAIDTITAFIRRQTG*
Ga0137370_100533254	3300012285	Vadose Zone Soil	FEGLPEHRMVPSPSQPETMRAIDTITGFIRRQGA*
Ga0157316_10768251	3300012510	Arabidopsis Rhizosphere	IEVQTFDGLPEHRMVPSPDQPQTIRAIETSTGFIRRQTG*
Ga0137394_100285721	3300012922	Vadose Zone Soil	YRKRGGAIEVQTFNGLPEHRMVPSTSQPETMRAIDTITTFIRRQFE*
Ga0137407_100552281	3300012930	Vadose Zone Soil	TFDGLPEHRMVPSPSQPETMHAIETITAFIRRQTG*
Ga0164300_100642512	3300012951	Soil	GGQLEVHKFEGLPEHRMVPSRAQPETMRAIDTIAEFIRRQT*
Ga0134087_105163182	3300012977	Grasslands Soil	RKRGGAIEVHTFDGLPEHRMVPSPSQPETMRAIDTITDFIRRQTA*
Ga0164304_111456551	3300012986	Soil	HTFEGLPEHRMVPSPSQPETMHLIDTITTFIRRQTA*
Ga0075313_11812931	3300014267	Natural And Restored Wetlands	YQKRGGAIEVHTFTGLPEHGMVPSPSKPETMRAIEIIAAFIRQHGG*
Ga0075346_11294211	3300014306	Natural And Restored Wetlands	IEVHTLDGLPEHRMVPSPSEPETMRFIDIVRGFIAAKG*
Ga0075322_10041924	3300014311	Natural And Restored Wetlands	FIASYRKRGGAIEAHTFEGLPEHRMVPSPDKPETMRFMDLVTAFIRRHSA*
Ga0075316_11747991	3300014314	Natural And Restored Wetlands	KRGGAIEVHTFEGLPEHRMVPSPDKPETMRFIDTVTDFIRRQTT*
Ga0180062_11503612	3300014879	Soil	SYRKRGGAIEVHTFDGLPEHRMVPSPSQPETMRAIGTITAFITAKA*
Ga0173478_103179182	3300015201	Soil	RKRGGQIEVHTFEGLPEHRVVPSPAQPETMRAMDTITGFIERQTS*
Ga0132255_1014797291	3300015374	Arabidopsis Rhizosphere	FIASYRKRGGQIEVHTFEGLPEHRIVPSPAQPETMRAMDTITEFVRRQA*
Ga0134083_102468961	3300017659	Grasslands Soil	RKRGGPIEAQTFDGLPEHRMVPSPSQPETMRAIDTITGFIRRQSA
Ga0184610_11176471	3300017997	Groundwater Sediment	FIASYRKRGGAIEVHTFEGLPEHRMVPSPAQPETMRAMETITTFIRRQTA
Ga0184610_12556231	3300017997	Groundwater Sediment	GAIEVHTFDGLPEHRMVPSPSQPETMRVIDTITAFIRRQS
Ga0184638_10369501	3300018052	Groundwater Sediment	KRGAAIEVHTFDGLPEHRMVPSPAQPETMRVIDTITAFIRRQTA
Ga0184626_101170841	3300018053	Groundwater Sediment	KRGGTIEVQTFDGLPEHRMVPSPSQPETMRAIDTITAFIRRQTG
Ga0184640_104306892	3300018074	Groundwater Sediment	GGAIEAQTFDGLPEHRIVQSPTQPATMRLIETITAFIRRQTPAWSAEQLQV
Ga0184633_105459172	3300018077	Groundwater Sediment	VHTFDGLPEHRMVPSPSQPETMRAIDTISAFIQRQTG
Ga0184625_104398772	3300018081	Groundwater Sediment	RKRGAAIEVHTFDGLPEHRMVPSPAQPETMRVIDTITAFIRRQTA
Ga0190265_115328391	3300018422	Soil	IEVHTFDGLPEHRVVPSPSQPDTMRLIDTITAFISNKA
Ga0190275_100158111	3300018432	Soil	RGGAIEVDTFDGLPEHRMVPSPSEPETMRFIEVVSAFIRQQSK
Ga0190270_113366412	3300018469	Soil	AIEVHTFDGLPEHRMVPSPSEPETMRFIDIVSAFIGRQT
Ga0184646_15886922	3300019259	Groundwater Sediment	ASYRKRGGAIEAQTFDGLPEHRMVPSPSQPETMRAMDTINGFIRRHSG
Ga0193707_11827102	3300019881	Soil	KRGGVLEDHTFEGLPEHRMVPSADQPETMRFIDIVTAFIRRQAA
Ga0163150_101404612	3300020195	Freshwater Microbial Mat	ITSYRKRGGAIEVDTFDGLPEHRMVPSPDQPETMRFIDAVSAFIAAKT
Ga0206224_10019241	3300021051	Deep Subsurface Sediment	ASYRKRGGAIEVHTFDNLPEHRMVPSASQPETMRVIDTITAFVRRQTG
Ga0210378_100182861	3300021073	Groundwater Sediment	RGGAIEVHTFDGLPEHRMVPSPAQPETMRCMETITTFIRRQTA
Ga0126371_115797102	3300021560	Tropical Forest Soil	EVQTFEGLPEHRMVPSPAQPETMRAMDTITDFIKRQTA
Ga0207657_112103042	3300025919	Corn Rhizosphere	RKRGGAVEVHTFDGLPEHRMVPSPDKPETVRFIDIVTEFIRRHS
Ga0207690_118689261	3300025932	Corn Rhizosphere	GQIEVHTFEGLPEHRVVPSPAQPETMRAMDTITGFIERQTS
Ga0207640_115763012	3300025981	Corn Rhizosphere	FIASYRKRGGQIEVHTFEGLPEHRVVPSPAQPETMRAMDTITGFIERQTS
Ga0208418_10094912	3300026018	Natural And Restored Wetlands	VHSFAGLPEHRMVPSPSQPESMRFIETVSVFIRQKTG
Ga0208685_10562392	3300027513	Soil	VHTFDGLPEHRMVPSPDQPETMRFIDIVSAFIQQQTK
Ga0209464_100785413	3300027778	Wetland Sediment	AIEVHSFDGLPEHRMVPSPSEPETMRFIDIVSAFIRRQAR
Ga0209726_103711302	3300027815	Groundwater	HSFDGLPEHRMVPSPSQPETMRFIEIVSAFIQQQAN
Ga0209683_101110891	3300027840	Wetland Sediment	VHTFDGLPEHRMVPSPSQPESMRFIDIVRTFIGQQPG
Ga0209974_104436311	3300027876	Arabidopsis Thaliana Rhizosphere	IEVHSFDGLPEHGMVPSPSEPETMRVIDTIAAFIRRQS
Ga0209481_102866711	3300027880	Populus Rhizosphere	GGVLEDHTFEGLPEHRMVPSPDNPETMRFVDIVTAFIRRQS
Ga0268265_105422651	3300028380	Switchgrass Rhizosphere	GVLEDHTFEGLPEHRMVPSPDMPETMRFIDIVTGFIRRHAV
Ga0268265_114689991	3300028380	Switchgrass Rhizosphere	RGGQIEVHTFEGLPEHRVVPSPAQPETMRAMDTITGFIERQTS
Ga0307305_104271471	3300028807	Soil	ASYRKRGGAIEVHTFDGLPEHRMVPSPSQPETMRAIDTITDFIRRQTA
Ga0302046_108954272	3300030620	Soil	HTFNGLPEHRMTPSPGQPETMRVIDTIMTFIRRQTGWRLGTEVR
Ga0299913_102309051	3300031229	Soil	EVHTFAGLPEHRMVPSPNQPDTMRVIDTITAFIQRQTA
Ga0247727_110176322	3300031576	Biofilm	AETFDGLPENRMVPSPSQPETTRFIETVTAFIRRQTG
Ga0306918_104699232	3300031744	Soil	RKRGGQIEVHTFEGLPEHRMVPSPAQPETMRAMDTITDFIKRQTA
Ga0307473_105813421	3300031820	Hardwood Forest Soil	RGGAIEVETFDGLPEHRMVPSPSQPETMRAIDTITAFVRRQTT
Ga0310897_100872611	3300032003	Soil	GQIEVHTFEGLPEHRMVPSCAQPETMRAMDTIAEFIRRQT
Ga0306924_104512671	3300032076	Soil	FIASYRKRGGRIEVQTFEGLPEHRMVPSPAQPETMRAMDTITDFIKRQTA
Ga0335085_114887612	3300032770	Soil	SYRKRGGANDVHTFEGLPEHRMVPSPDQPETMRCIDTITAFIRRHTV
Ga0214471_111662422	3300033417	Soil	ASYRKRGGAIEVHTFEGLPEHRMVPSPSQPETMRVIETITTFIRRQTG
Ga0316613_102760161	3300033434	Soil	IASYRKRGGAIEVHTFDGLPEHRMVPSPDQPETMRFIDIVSAFISAKA
Ga0316627_1004865102	3300033482	Soil	RKRGGAIEVHTFDGLPEHRMVPSPDQPETMRFIDIVSAFISAKA
Ga0364942_0136308_658_798	3300034165	Sediment	YRKRGGAIEVHSFDGLPEHRMVPSPSQPETMRAIETITEFVRRQTG
Ga0364934_0240413_2_109	3300034178	Sediment	HTFDSLPEHRMVPSPSQPETMRFIDIVSTFITAKT
Ga0370495_0339493_382_495	3300034257	Untreated Peat Soil	VHTFDGLPEHRMVPSPSQPETMRFIDIVSAFVRQRTG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103852

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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