Metagenome Family F103832

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103832
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	83 residues
Representative Sequence	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVRRAA
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.35 %
% of genes near scaffold ends (potentially truncated)	40.59 %
% of genes from short scaffolds (< 2000 bps)	92.08 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.089 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.881 % of family members)
Environment Ontology (ENVO)	Unclassified (42.574 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.47% β-sheet: 0.00% Coil/Unstructured: 60.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00596	Aldolase_II	24.75
PF00296	Bac_luciferase	15.84
PF03401	TctC	8.91
PF04392	ABC_sub_bind	0.99
PF13432	TPR_16	0.99
PF13428	TPR_14	0.99
PF05088	Bac_GDH	0.99
PF06277	EutA	0.99
PF00144	Beta-lactamase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	15.84
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	8.91
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.99
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.99
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	0.99
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.99
COG4819	Ethanolamine utilization protein EutA, possible chaperonin	Amino acid transport and metabolism [E]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.09 %
Unclassified	root	N/A	8.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.09 %
Unclassified	root	N/A	8.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.09 %
Unclassified	root	N/A	8.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.10 %
Unclassified	root	N/A	8.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.57 %
Unclassified	root	N/A	8.91 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	36.63 %
Unclassified	root	N/A	8.91 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.97 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	18.81 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	16.83 %
Unclassified	root	N/A	8.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	18.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	16.83 %
Unclassified	root	N/A	8.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	18.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	16.83 %
Unclassified	root	N/A	8.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	16.83 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	14.85 %
Unclassified	root	N/A	8.91 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	3.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002239\|JGI24034J26672_10040584	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300004081\|Ga0063454_100547910	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300004156\|Ga0062589_100005658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4602	Open in IMG/M
3300004156\|Ga0062589_100913346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	810	Open in IMG/M
3300004157\|Ga0062590_102359968	Not Available	560	Open in IMG/M
3300004463\|Ga0063356_101636652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	960	Open in IMG/M
3300004463\|Ga0063356_104466451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	602	Open in IMG/M
3300004463\|Ga0063356_105102892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	564	Open in IMG/M
3300004479\|Ga0062595_100561362	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300004479\|Ga0062595_101099255	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300005093\|Ga0062594_102105591	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300005163\|Ga0066823_10129118	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300005340\|Ga0070689_100818546	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300005340\|Ga0070689_101241338	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300005343\|Ga0070687_100349314	All Organisms → cellular organisms → Bacteria → Proteobacteria	954	Open in IMG/M
3300005353\|Ga0070669_100093222	All Organisms → cellular organisms → Bacteria → Proteobacteria	2261	Open in IMG/M
3300005353\|Ga0070669_100816879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	793	Open in IMG/M
3300005535\|Ga0070684_101256216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	697	Open in IMG/M
3300005543\|Ga0070672_100941052	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300005545\|Ga0070695_100951936	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300005548\|Ga0070665_102032636	Not Available	580	Open in IMG/M
3300005549\|Ga0070704_100053002	All Organisms → cellular organisms → Bacteria → Proteobacteria	2865	Open in IMG/M
3300005549\|Ga0070704_101206970	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300005719\|Ga0068861_100540942	All Organisms → cellular organisms → Bacteria → Proteobacteria	1060	Open in IMG/M
3300006038\|Ga0075365_11267336	Not Available	518	Open in IMG/M
3300006172\|Ga0075018_10159241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1047	Open in IMG/M
3300006854\|Ga0075425_101652135	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300006881\|Ga0068865_101269471	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300009098\|Ga0105245_10738692	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300009101\|Ga0105247_10817774	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300009143\|Ga0099792_10095465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1551	Open in IMG/M
3300009553\|Ga0105249_12682318	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300010040\|Ga0126308_10818746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	646	Open in IMG/M
3300010040\|Ga0126308_10879811	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300010045\|Ga0126311_11634207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	543	Open in IMG/M
3300010159\|Ga0099796_10068996	All Organisms → cellular organisms → Bacteria → Proteobacteria	1272	Open in IMG/M
3300010320\|Ga0134109_10408339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	544	Open in IMG/M
3300010337\|Ga0134062_10802977	Not Available	503	Open in IMG/M
3300010364\|Ga0134066_10369505	Not Available	538	Open in IMG/M
3300010399\|Ga0134127_11395603	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300010401\|Ga0134121_11503346	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300010401\|Ga0134121_12561817	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300012208\|Ga0137376_10641294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	918	Open in IMG/M
3300012210\|Ga0137378_11625060	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300012212\|Ga0150985_107752208	All Organisms → cellular organisms → Bacteria → Proteobacteria	1094	Open in IMG/M
3300012212\|Ga0150985_112170422	All Organisms → cellular organisms → Bacteria → Proteobacteria	956	Open in IMG/M
3300012212\|Ga0150985_113921860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	631	Open in IMG/M
3300012469\|Ga0150984_115051679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	603	Open in IMG/M
3300012469\|Ga0150984_117165199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	913	Open in IMG/M
3300012469\|Ga0150984_121065883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	619	Open in IMG/M
3300012683\|Ga0137398_10770676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	671	Open in IMG/M
3300012912\|Ga0157306_10429759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	524	Open in IMG/M
3300012917\|Ga0137395_10223235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1318	Open in IMG/M
3300012923\|Ga0137359_10489300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1086	Open in IMG/M
3300012924\|Ga0137413_11082038	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300012930\|Ga0137407_10739093	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300012944\|Ga0137410_11546805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	580	Open in IMG/M
3300012960\|Ga0164301_11151584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	620	Open in IMG/M
3300013297\|Ga0157378_11353097	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300013306\|Ga0163162_11408016	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300013306\|Ga0163162_11550203	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300014745\|Ga0157377_10269841	All Organisms → cellular organisms → Bacteria → Proteobacteria	1111	Open in IMG/M
3300015200\|Ga0173480_10466782	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300015245\|Ga0137409_10493187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1048	Open in IMG/M
3300015371\|Ga0132258_12188340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1389	Open in IMG/M
3300015373\|Ga0132257_102843408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	631	Open in IMG/M
3300017792\|Ga0163161_10155355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1741	Open in IMG/M
3300018482\|Ga0066669_11159487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	697	Open in IMG/M
3300019362\|Ga0173479_10116608	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300020059\|Ga0193745_1072783	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300020060\|Ga0193717_1026343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2353	Open in IMG/M
3300022756\|Ga0222622_10797501	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300025315\|Ga0207697_10136472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1062	Open in IMG/M
3300025893\|Ga0207682_10090569	All Organisms → cellular organisms → Bacteria → Proteobacteria	1325	Open in IMG/M
3300025901\|Ga0207688_10814434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	591	Open in IMG/M
3300025935\|Ga0207709_11230034	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300025935\|Ga0207709_11248206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	613	Open in IMG/M
3300025938\|Ga0207704_10886491	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300025940\|Ga0207691_10361288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1241	Open in IMG/M
3300025944\|Ga0207661_10928200	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300025949\|Ga0207667_11675499	Not Available	603	Open in IMG/M
3300026088\|Ga0207641_10803867	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300026089\|Ga0207648_10475686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1140	Open in IMG/M
3300026118\|Ga0207675_100362402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1422	Open in IMG/M
3300027903\|Ga0209488_10036326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3602	Open in IMG/M
3300027915\|Ga0209069_10064045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1740	Open in IMG/M
3300028379\|Ga0268266_10259284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1611	Open in IMG/M
3300028881\|Ga0307277_10453674	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300031231\|Ga0170824_120122909	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300031474\|Ga0170818_101415946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	726	Open in IMG/M
3300031548\|Ga0307408_100473762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1091	Open in IMG/M
3300031716\|Ga0310813_10388016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1198	Open in IMG/M
3300031726\|Ga0302321_102674763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	583	Open in IMG/M
3300031892\|Ga0310893_10185065	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300031902\|Ga0302322_102093015	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300032002\|Ga0307416_101987044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300032005\|Ga0307411_10876726	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300032012\|Ga0310902_10379081	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.45%
Host-Associated	Host-Associated	44.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.48%
Plants	Host-Associated → Plants	44.55%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.79%
Sediment	Environmental → Aquatic → Sediment	2.97%
Peat	Environmental → Terrestrial → Peat	1.98%
Roots	Host-Associated → Plants → Roots	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.89%
Loam	Environmental → Terrestrial → Soil → Loam	9.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.99%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002239	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24034J26672_100405841	3300002239	Corn, Switchgrass And Miscanthus Rhizosphere	VMAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0063454_1005479102	3300004081	Soil	ARSNAVLSALASAVKLNPRLSMGLAFELGVMVGAFIKTARGPKGIVGATAKLIDAVPLISEVSAARRVPRKAPPRKRKTVRRAA*
Ga0063455_1008841022	3300004153	Soil	RDEYAEPRPVPARWHAVLERGAAMAARSNAVLSALASAVKLNPRLSMGLAFELGVMVGAFIKTARGPKGIVGATAKLIDAVPLISEVSAARRVPRKAPPRKRKTVRRAA*
Ga0062589_1000056584	3300004156	Soil	MAARSNALVSAVATAVRLNPRLSAGLAFEIGVMVGAFVKSARKRGLSGASAKLIEAVPLISESSRGRKPARRKAVRRRK*
Ga0062589_1009133462	3300004156	Soil	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0062590_1023599682	3300004157	Soil	MAARSNALVSALASAVRLHPRLSAGLAFELGVMVGSFIKAARGRRGLTGATAKLIDAVPLISQAPACRAVRRKPAVRKRKPARRAA*
Ga0063356_1016366522	3300004463	Arabidopsis Thaliana Rhizosphere	MATRSFLSALASAVKLNPRLSAGLAFEIGVMVGAYIRASRGKRGIAGATAKLIDAVPLIPHGPVRRTAAKRTPPRRRSTRRKAA*
Ga0063356_1044664511	3300004463	Arabidopsis Thaliana Rhizosphere	GNRLEPGTGLGSRRWHRAFQGTISMAARSNALVSAVATAVRLNPRLSAGLAFEIGVMVGAFVKSARKRGLSGASAKLIEAVPLISESSRGRKPARRKAVRRRK*
Ga0063356_1051028921	3300004463	Arabidopsis Thaliana Rhizosphere	MASRSNGFISALASAVKLNPRLSAGLAFEIGVMVGAYIRASRGRRGIAGATARLIDAVPIIPHAPPARRATRKTSPRRRAARRKAA*
Ga0062595_1005613622	3300004479	Soil	MAARSNAVLSALRSAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEIPARRAPRRATARKRKPVRRAA*
Ga0062595_1010992551	3300004479	Soil	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA
Ga0062594_1021055912	3300005093	Soil	MAARSNALLSALASAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAGPLISEASSTRRMPRKAASRKRKTVKRAA*
Ga0066823_101291181	3300005163	Soil	MAARSNALLSALTSAVKLNPRLSAGLAFELGVMVGAFIKSARGRKGIAGATAKLIDAVPLISEASPARRTTRKAAPRKRKTVRRAA*
Ga0070689_1008185462	3300005340	Switchgrass Rhizosphere	SNALVSAVATAVRLNPRLSAGLAFEIGVMVGAFVKSARKRGLSGASAKLIEAVPLISESSRGRKPARRKAVRRRK*
Ga0070689_1012413381	3300005340	Switchgrass Rhizosphere	MAARSNALLSALASAVRLNPRLSAGLAFELGVMVGAFIKSARGRKGIAGATARLIDAVPVISEPAPARRAPRKAPPRKRKTVRRAA*
Ga0070687_1003493142	3300005343	Switchgrass Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTV
Ga0070669_1000932224	3300005353	Switchgrass Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRK
Ga0070669_1008168791	3300005353	Switchgrass Rhizosphere	MSALASAVRLNPRLSAGLAFEFGVMVGAFIKSARVRGIKGASAKLIEAVPLIAQAPSARRSHRKAAAPKRKTARRAPRTKTA*
Ga0070684_1012562162	3300005535	Corn Rhizosphere	MSALASAVKLNPRFSAGLAFEIGVMVGAFVKSARGRRGLAGATAKLIDAVPLIAAASQPRKPVRKAVPRKRKSARHAT*
Ga0070672_1009410522	3300005543	Miscanthus Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRK
Ga0070695_1009519362	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0070665_1020326362	3300005548	Switchgrass Rhizosphere	MAARSNAILSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIEAVPIVSERPAPRRQSPRKAAPRKRKATRRAA*
Ga0070704_1000530022	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MAARSNGLVSAVATAVRLNPRLSAGLAFEIGVMVGAFVKSARKRGLSGASAKLIEAVPLISESSRGRKPARRKAVRRRK*
Ga0070704_1012069701	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	RSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0068861_1005409422	3300005719	Switchgrass Rhizosphere	SNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0075365_112673362	3300006038	Populus Endosphere	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDAVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0075018_101592413	3300006172	Watersheds	MSALASAVKLHPRLSAGLAFELGVMAGAYIKEARGRRGLAGATAKLIDAVPLIPHAPPARRAKKRNVAVKKPKAKRAK
Ga0075425_1016521351	3300006854	Populus Rhizosphere	VRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEIPARRAPRRATARKRKPVRRAA*
Ga0068865_1012694712	3300006881	Miscanthus Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAA
Ga0105245_107386921	3300009098	Miscanthus Rhizosphere	MAARSNALLSALASAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAGPLISEASSTRRMPRKAASRKRKTVRRAA*
Ga0105247_108177742	3300009101	Switchgrass Rhizosphere	SKRDAAMAARSNAVLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0099792_100954652	3300009143	Vadose Zone Soil	MAARSTALLSALASAVKLNPRLSAGLAFELGVVVGAFIKTARGRKGIAGATAKLIDAVPLSSGPSPTRRMPRKAASRKRKTVSRAA*
Ga0105249_126823182	3300009553	Switchgrass Rhizosphere	MSRPGAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIEAAPIGSETPAPRRRSPR
Ga0126308_108187461	3300010040	Serpentine Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFVKKARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0126308_108798111	3300010040	Serpentine Soil	MAARSNALVSALASAVRLHPRLSAGLAFELGVMVGSFIKAARGRQGLAGATAKLIDAVPLISQAPARRTVRRKPAVRKRKATRRAA*
Ga0126311_116342072	3300010045	Serpentine Soil	ALASAVKLNPRLSAGLAFELGVMVGAFVKKARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA*
Ga0099796_100689962	3300010159	Vadose Zone Soil	MAARSNALLSALTSAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLSSGPSPTRRMPRKAASRKRKTVSRAA*
Ga0134109_104083391	3300010320	Grasslands Soil	MAARSNALLSALASAVRLNPRLSTGLAFELGVMVGAFIKTARGRKGIAGATAKLVDAVPLSSEASPARRMPRKAASRKRKVVRRAA*
Ga0134062_108029771	3300010337	Grasslands Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVEAFIKTARGRKGLAGATAKLIDAVPLSSEPSPARRMPRKAAPRKRKTVRRAA*
Ga0134066_103695051	3300010364	Grasslands Soil	MAARSNALLSALASAVKLYPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRVPRKAASRKRKTVRRAA*
Ga0134127_113956032	3300010399	Terrestrial Soil	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSTRRKPRKAASRKRKTVRRAA*
Ga0134121_115033462	3300010401	Terrestrial Soil	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSTRRRPRKAASRKRKTVRRAA*
Ga0134121_125618172	3300010401	Terrestrial Soil	MAARSNAVLSALRSAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASPGRRTTRR
Ga0137376_106412942	3300012208	Vadose Zone Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISETSSTRRMPRKAASRKRKTVRRAA*
Ga0137378_116250601	3300012210	Vadose Zone Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRVPRKAASRKRKTVRRAA*
Ga0150985_1077522082	3300012212	Avena Fatua Rhizosphere	MAARSNAVLSALASAVKLNPRLSMGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLMSEISPARRGPRKAPSRKRKTVRRAA*
Ga0150985_1121704221	3300012212	Avena Fatua Rhizosphere	MAARSNALMSALASAVRLNPRLSAGLAFELGVMVGAYIKSARVRGIKGASAKLIEAVPLIAHAPSARRNHRKAAAPKRKTVRRAPRTKTA*
Ga0150985_1139218601	3300012212	Avena Fatua Rhizosphere	KRDADMAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVRRAA*
Ga0150984_1150516791	3300012469	Avena Fatua Rhizosphere	KRDADMAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRVPRKAASRKRKTVRRAA*
Ga0150984_1171651992	3300012469	Avena Fatua Rhizosphere	MAARSNAVLSALASAVKLNPRLSMGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEVSAVRRVARKAPPRKRKTVRRAA*
Ga0150984_1210658832	3300012469	Avena Fatua Rhizosphere	SNAIMSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGHKGIAGATAKLIEAVPIISDTPPARRAPRKAPSRKQRTARRVA*
Ga0137398_107706762	3300012683	Vadose Zone Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSLTRRVPRKAASRKRKTVRRAA*
Ga0157306_104297592	3300012912	Soil	TAVRLNPRLSAGLAFEIGVMVGAFVKSARKRGLSGASAKLIEAVPLISESSRGRKPARRKAVRRRK*
Ga0137395_102232352	3300012917	Vadose Zone Soil	MAARSNALLSALASAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRVPRKASSRKRKTVRRAA*
Ga0137359_104893002	3300012923	Vadose Zone Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLSLEASPARRMPRKAASRKRKTVRRAA*
Ga0137413_110820382	3300012924	Vadose Zone Soil	MAARSNAILSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIEAVPIISETPAPRRTPRKAPPRKRKTVRRAA*
Ga0137407_107390932	3300012930	Vadose Zone Soil	KLNPRLSAGLAFELGVVVGAFIKTTRGRKGIAGATAKLIDAVPLSSGPSPTRRMPRKAASRKRKAVRRAA*
Ga0137410_115468051	3300012944	Vadose Zone Soil	MAARSNAILSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEGPPARRAPRKAAPRKRKAVKRAA*
Ga0164301_111515842	3300012960	Soil	MAARSNALMSALASAVKLNPRLSAGLAFEIGVMVGAFVKSARGRRGLAGATAKLIDAVPLISSAPQPREPVRKAAPRKRKSARRVA*
Ga0157378_113530972	3300013297	Miscanthus Rhizosphere	DMAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVKRAA*
Ga0163162_114080161	3300013306	Switchgrass Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMP
Ga0163162_115502032	3300013306	Switchgrass Rhizosphere	MAARSNALVSALASAVRLHPRLSAGLAFELGVMVGSFIKAARGRRGLAGATAKLIDAVPLISQAPARRAVRRKPAVRKRKPARRA
Ga0157377_102698411	3300014745	Miscanthus Rhizosphere	LSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVKRAA*
Ga0173480_104667822	3300015200	Soil	RLNPRLSAGLAFELGVMVGAFIKSARGRKGIAGTTARLIDAVPLMHAAPERKKTVKRRPVSRRRKTSRRAA*
Ga0137409_104931872	3300015245	Vadose Zone Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGMMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRVPRKAASRKRKTVRRAA*
Ga0132258_121883402	3300015371	Arabidopsis Rhizosphere	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVRRAA*
Ga0132257_1028434082	3300015373	Arabidopsis Rhizosphere	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSPRRMPRKAASRKRKTLRRAA*
Ga0163161_101553553	3300017792	Switchgrass Rhizosphere	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA
Ga0066669_111594871	3300018482	Grasslands Soil	MAARSNAILSALASAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPPTRRAPRKAASRKRKTVRRAA
Ga0173479_101166082	3300019362	Soil	MAARSNALVSAVATAVRLNPRLSAGLAFEIGVMVGAFVKSARKRGLSGASAKLIEAVPLISESSRGRKPARRKAVRRRK
Ga0193745_10727832	3300020059	Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRAPRKAASRKRKTVRRAA
Ga0193717_10263434	3300020060	Soil	MAARSNALLSALANAVRLNPRLSAGLAFELGVMVGAFIKNARGRSGLAGATATAKLIDAVPLIPHAPPARRTARRRPVARKRK
Ga0213876_107912861	3300021384	Plant Roots	MASRSNAVLSALATAVKLHPRLSAGLAFELGVMVGAFVKSARGRKGIAGATAKLIDAVPLIDTARSSRRPAR
Ga0222622_107975012	3300022756	Groundwater Sediment	GCETDAAMATRSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRAPRKAASRKRKTVRRAA
Ga0207697_101364722	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA
Ga0207682_100905692	3300025893	Miscanthus Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSTRRSWDVGI
Ga0207688_108144341	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	RSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVRRAA
Ga0207709_112300342	3300025935	Miscanthus Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVRRAA
Ga0207709_112482062	3300025935	Miscanthus Rhizosphere	MAARSNALLSALASAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAGPLISEASSTRRMPRKAASRKRKTVKRAA
Ga0207704_108864911	3300025938	Miscanthus Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASR
Ga0207691_103612881	3300025940	Miscanthus Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKT
Ga0207661_109282002	3300025944	Corn Rhizosphere	MAARSNAVLSALASAVKLNPRLSAGLAFEIGVMVGAFIKTARGRKGIAGATAKLIEAVPLRSEPARAPRRAPSRKRRSTRRAA
Ga0207667_116754992	3300025949	Corn Rhizosphere	MAARSNALMQALANAVRLNPRLSAGLAFEIGVMVGAFVRNARGRKGIAGATAKLIDAVPLMSTSSALRRASPSRKPASRRATSRRRAA
Ga0207668_105182192	3300025972	Switchgrass Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRR
Ga0207641_108038671	3300026088	Switchgrass Rhizosphere	MAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKA
Ga0207648_104756862	3300026089	Miscanthus Rhizosphere	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEASSTRRMPRKAASRKRKTVRRAA
Ga0207675_1003624022	3300026118	Switchgrass Rhizosphere	VMAARSNALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA
Ga0209488_100363263	3300027903	Vadose Zone Soil	MAARSTALLSALASAVKLNPRLSAGLAFELGVVVGAFIKTARGRKGIAGATAKLIDAVPLSSGPSPTRRMPRKAASRKRKTVRRAA
Ga0209069_100640451	3300027915	Watersheds	MASRSSLLMSALASAVKLHPRLSAGLAFELGAMAGAYIKEARGRRGLAGATAKLIDAVPLIPDAPPARRVKKRK
Ga0268266_102592842	3300028379	Switchgrass Rhizosphere	MAARSNAILSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIEAAPIVSERPAPRWQSPRKAAPRKRKATRRAA
Ga0307277_104536742	3300028881	Soil	MAARSNALLSALASAVRLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEPSPTRRAPRKAASRKRKTDRRAA
Ga0170824_1201229091	3300031231	Forest Soil	MAARSNAILSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEGSSTRRMPRKAA
Ga0170818_1014159462	3300031474	Forest Soil	MAARSNAILSALASAVKLNPRLSAGLAFELGVMVGAFIKTARGRKGIAGATAKLIDAVPLISEGSSTRRMPRKAAWRKRKTVGRAA
Ga0307408_1004737621	3300031548	Rhizosphere	MAARSNALLSAVATAVRLNPRLSAGLAFELGIMVGAFIKSARGRKGLAGTTAKWIDAVPLISQAPARRTVKRKPARRRK
Ga0310813_103880163	3300031716	Soil	MAARSNALLSALASAVKLNPRLSAGLAFELGVMVGAFIKSARGRKGIAGATAKLIDAVPLISEVSPARRAPRRTASRKRKTVRRAA
Ga0302321_1026747632	3300031726	Fen	SALASAVKLNPRLSAGLAFELGVMVGAFIKSARGRKGIAGATAKLIDAVPLVSEPAPARRTPRKAASRKRKIAKRAA
Ga0310893_101850651	3300031892	Soil	ALLAALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSKRRMPRKAASRKRKTVRRAA
Ga0302322_1020930152	3300031902	Fen	AVKLNPRLSAGLAFELGVMVGAFIKSARGRKGIAGATAKLIDAVPLVSEPAPARRAPRKAASRKRKTTKRAA
Ga0307416_1019870441	3300032002	Rhizosphere	MASRSNGFISALASAVKLHPRLSAGLAFEIGVMVGAYIRASRGRRGIAGTTARLIDAVPIVPHAPPARRAARKAAPRRRAVRRKAA
Ga0307411_108767261	3300032005	Rhizosphere	GLGPRRWHRAFQGNIGMAARSNALLSAVATAVRLNPRLSAGLAFELGIMVGAFIKSARGRKGLAGTTAKWIDAVPLISQAPARRTVKRKPARRRK
Ga0310902_103790811	3300032012	Soil	ALSSAVKLNPRLSAGLAFELGVMVGAFVKTARGRKGIAGATTKLIDTVPLISEASSTRRRPRKAASRKRKTVRRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103832

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences