Metagenome Family F103818

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103818
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	81 residues
Representative Sequence	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADKALAGKKDRRRTFNGRAIVQLIAVRLTAALR
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.16 %
% of genes near scaffold ends (potentially truncated)	35.64 %
% of genes from short scaffolds (< 2000 bps)	87.13 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.396 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.594 % of family members)
Environment Ontology (ENVO)	Unclassified (55.446 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.386 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.04% β-sheet: 18.92% Coil/Unstructured: 45.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07238	PilZ	25.74
PF02954	HTH_8	3.96
PF00816	Histone_HNS	1.98
PF05598	DUF772	1.98
PF07505	DUF5131	0.99
PF09851	SHOCT	0.99
PF00580	UvrD-helicase	0.99
PF00582	Usp	0.99
PF07167	PhaC_N	0.99
PF01068	DNA_ligase_A_M	0.99
PF00216	Bac_DNA_binding	0.99
PF00211	Guanylate_cyc	0.99
PF13602	ADH_zinc_N_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2916	DNA-binding protein H-NS	Transcription [K]	1.98
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.99
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.99
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.99
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.99
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.99
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.99
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.99
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.99
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.45 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	52.48 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	51.49 %
Unclassified	root	N/A	39.60 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	48.51 %
Unclassified	root	N/A	39.60 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	1.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.99 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Bradyrhizobium nanningense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	1.98 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.99 %
Methylocystis sp. H62	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	0.99 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201DKP5E	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	531	Open in IMG/M
2170459010\|GIO7OMY02IC2ON	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300000956\|JGI10216J12902_109531485	Not Available	578	Open in IMG/M
3300002907\|JGI25613J43889_10083143	Not Available	854	Open in IMG/M
3300002917\|JGI25616J43925_10271142	Not Available	634	Open in IMG/M
3300004156\|Ga0062589_100300867	All Organisms → cellular organisms → Bacteria → Proteobacteria	1240	Open in IMG/M
3300004643\|Ga0062591_100622906	Not Available	959	Open in IMG/M
3300005335\|Ga0070666_10432485	Not Available	949	Open in IMG/M
3300005364\|Ga0070673_101037207	Not Available	764	Open in IMG/M
3300005467\|Ga0070706_100130940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2341	Open in IMG/M
3300005615\|Ga0070702_100310299	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095	Open in IMG/M
3300005719\|Ga0068861_102256412	Not Available	546	Open in IMG/M
3300006051\|Ga0075364_10265132	Not Available	1168	Open in IMG/M
3300006172\|Ga0075018_10648813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	566	Open in IMG/M
3300006881\|Ga0068865_100156328	All Organisms → cellular organisms → Bacteria → Proteobacteria	1735	Open in IMG/M
3300007255\|Ga0099791_10221270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	895	Open in IMG/M
3300007788\|Ga0099795_10012828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2553	Open in IMG/M
3300009038\|Ga0099829_10287708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1346	Open in IMG/M
3300009038\|Ga0099829_10868851	Not Available	748	Open in IMG/M
3300009088\|Ga0099830_10090559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2264	Open in IMG/M
3300009088\|Ga0099830_11126856	Not Available	651	Open in IMG/M
3300009089\|Ga0099828_10336190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	1360	Open in IMG/M
3300009143\|Ga0099792_10146697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1296	Open in IMG/M
3300009148\|Ga0105243_10569851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1085	Open in IMG/M
3300009176\|Ga0105242_10284671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1503	Open in IMG/M
3300010159\|Ga0099796_10006835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2945	Open in IMG/M
3300011271\|Ga0137393_11496701	Not Available	564	Open in IMG/M
3300012189\|Ga0137388_11426021	Not Available	631	Open in IMG/M
3300012198\|Ga0137364_10298838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1195	Open in IMG/M
3300012199\|Ga0137383_10521051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	870	Open in IMG/M
3300012202\|Ga0137363_10349912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1223	Open in IMG/M
3300012202\|Ga0137363_10388784	Not Available	1160	Open in IMG/M
3300012202\|Ga0137363_10671463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	876	Open in IMG/M
3300012202\|Ga0137363_10793228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	803	Open in IMG/M
3300012202\|Ga0137363_11089215	Not Available	679	Open in IMG/M
3300012211\|Ga0137377_10792831	Not Available	880	Open in IMG/M
3300012349\|Ga0137387_11088880	Not Available	570	Open in IMG/M
3300012357\|Ga0137384_10102441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2389	Open in IMG/M
3300012357\|Ga0137384_10703381	Not Available	821	Open in IMG/M
3300012361\|Ga0137360_10262338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1423	Open in IMG/M
3300012362\|Ga0137361_11373157	Not Available	630	Open in IMG/M
3300012582\|Ga0137358_10002476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10472	Open in IMG/M
3300012582\|Ga0137358_10949667	Not Available	560	Open in IMG/M
3300012917\|Ga0137395_10964155	Not Available	613	Open in IMG/M
3300012922\|Ga0137394_10869835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	753	Open in IMG/M
3300012922\|Ga0137394_11168649	Not Available	633	Open in IMG/M
3300012923\|Ga0137359_10262975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1538	Open in IMG/M
3300012924\|Ga0137413_11524536	Not Available	544	Open in IMG/M
3300012927\|Ga0137416_11698460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	576	Open in IMG/M
3300012958\|Ga0164299_10598309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300012984\|Ga0164309_11140955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	650	Open in IMG/M
3300013772\|Ga0120158_10031894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4001	Open in IMG/M
3300013772\|Ga0120158_10320001	Not Available	742	Open in IMG/M
3300014326\|Ga0157380_10595384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1093	Open in IMG/M
3300014745\|Ga0157377_11614993	Not Available	520	Open in IMG/M
3300015242\|Ga0137412_11225247	Not Available	526	Open in IMG/M
3300015372\|Ga0132256_102195267	Not Available	657	Open in IMG/M
3300017792\|Ga0163161_10012207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5959	Open in IMG/M
3300018067\|Ga0184611_1025414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1859	Open in IMG/M
3300018433\|Ga0066667_11033858	Not Available	709	Open in IMG/M
3300018468\|Ga0066662_11530093	Not Available	695	Open in IMG/M
3300018469\|Ga0190270_11745700	Not Available	677	Open in IMG/M
3300019887\|Ga0193729_1246435	Not Available	570	Open in IMG/M
3300019888\|Ga0193751_1033244	All Organisms → cellular organisms → Bacteria → Proteobacteria	2387	Open in IMG/M
3300019888\|Ga0193751_1083415	Not Available	1270	Open in IMG/M
3300020199\|Ga0179592_10262110	Not Available	774	Open in IMG/M
3300020199\|Ga0179592_10457117	Not Available	551	Open in IMG/M
3300021086\|Ga0179596_10368165	Not Available	723	Open in IMG/M
3300021178\|Ga0210408_10769946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	755	Open in IMG/M
3300021478\|Ga0210402_10392621	All Organisms → cellular organisms → Bacteria → Proteobacteria	1288	Open in IMG/M
3300021976\|Ga0193742_1025823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2868	Open in IMG/M
3300024288\|Ga0179589_10117810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1104	Open in IMG/M
3300025315\|Ga0207697_10027308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2334	Open in IMG/M
3300025903\|Ga0207680_10540606	Not Available	831	Open in IMG/M
3300025910\|Ga0207684_10345030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1282	Open in IMG/M
3300025922\|Ga0207646_10376995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1281	Open in IMG/M
3300025935\|Ga0207709_10397061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1053	Open in IMG/M
3300025937\|Ga0207669_10049464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2506	Open in IMG/M
3300025940\|Ga0207691_10092179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2713	Open in IMG/M
3300026285\|Ga0209438_1089714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	964	Open in IMG/M
3300026304\|Ga0209240_1057563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1457	Open in IMG/M
3300026320\|Ga0209131_1121168	Not Available	1356	Open in IMG/M
3300026320\|Ga0209131_1288546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300026320\|Ga0209131_1383860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	524	Open in IMG/M
3300026345\|Ga0257148_1007513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	802	Open in IMG/M
3300026374\|Ga0257146_1054210	Not Available	650	Open in IMG/M
3300026489\|Ga0257160_1045334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	752	Open in IMG/M
3300026494\|Ga0257159_1020736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1072	Open in IMG/M
3300026497\|Ga0257164_1054006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	649	Open in IMG/M
3300026551\|Ga0209648_10295738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1162	Open in IMG/M
3300026551\|Ga0209648_10661942	Not Available	571	Open in IMG/M
3300026557\|Ga0179587_11135906	Not Available	514	Open in IMG/M
3300026920\|Ga0208575_1009674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	930	Open in IMG/M
3300027846\|Ga0209180_10089015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1750	Open in IMG/M
3300027846\|Ga0209180_10673593	Not Available	565	Open in IMG/M
3300027903\|Ga0209488_10693788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	730	Open in IMG/M
3300028673\|Ga0257175_1122932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	518	Open in IMG/M
3300031231\|Ga0170824_106425230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	790	Open in IMG/M
3300031446\|Ga0170820_17139969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	802	Open in IMG/M
3300031474\|Ga0170818_105720657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	584	Open in IMG/M
3300031474\|Ga0170818_109380723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium nanningense	678	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.16%
Host-Associated	Host-Associated	15.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.18%
Plants	Host-Associated → Plants	15.84%
Aquatic	Environmental → Aquatic	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.96%
Sediment	Environmental → Aquatic → Sediment	1.98%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.23%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Loam	Environmental → Terrestrial → Soil → Loam	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	40.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021976	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_08189990	2170459007	Grass Soil	MNAKPSFRPVPCNRGWQIHVTWPDAQTEVLGGYPSEAEAVRWINNFSDRWTANVLAGNQRRHTRNARSII
F62_04516030	2170459010	Grass Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKRRRRAFNGKAFLQLI
JGI10216J12902_1095314851	3300000956	Soil	GMPAMNTKPSFRPVPCPGGWRIVVTWPDARTEQLGGYSSEAEAVKWINNVSDKWTDRALAGKRDRRRTFNARAIVQLIAVRLRAALS*
JGI25613J43889_100831431	3300002907	Grasslands Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADKALAGKMDRRRTFNGRAIVQLIAVRLTAALR*
JGI25616J43925_102711421	3300002917	Grasslands Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWTDKALAGKKYRRRTFNAKAIVQLIAVRLTAALR*
Ga0062589_1003008671	3300004156	Soil	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTANVLAGNQRRHARNGRSLV
Ga0062591_1006229061	3300004643	Soil	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNGRSLVRLIAERLHLADG*
Ga0070666_104324851	3300005335	Switchgrass Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSDRWTANVLAGNQRRHARNGRSLVRLIAERLHLADG*
Ga0070673_1010372071	3300005364	Switchgrass Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSDRWTANVLAGNQRRHARNGRSLVQLIADRLHLADG*
Ga0070706_1001309403	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNARPSFRPVPSNTGWQIVVTWPDARTEQLGGYSSEAEAVKWINNASDRWADKAMAGKKYRRRGFNAFVQLIDVRLTAAISRCVDRVRACRKRTASP*
Ga0070702_1003102991	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSSRWTAHVLAGNQRRHARNGRSLV
Ga0068861_1022564121	3300005719	Switchgrass Rhizosphere	IHVTWPDARTEVLGGYPSEAEADRWINNVSNRWTAHVLAGNQRRHARNGRSLVRLIAERLHLADG*
Ga0075364_102651322	3300006051	Populus Endosphere	MNAKPSFRPVPCNGGWQIHVTWPDARTEILGGYSSEAEAVQWINNVSNRWTANVLAGNQRRHARNGRSMVQLIAER
Ga0075018_106488131	3300006172	Watersheds	MNAKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRGFKGKAFLQLIAIRLTTVFR*
Ga0068865_1001563281	3300006881	Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNGRS
Ga0099791_102212701	3300007255	Vadose Zone Soil	MNTKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR*
Ga0099795_100128281	3300007788	Vadose Zone Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR*
Ga0099829_102877081	3300009038	Vadose Zone Soil	AKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADRALAGKKDGRRTLNGRAIVQLIAVRLRAALS*
Ga0099829_108688511	3300009038	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSETEAVKWINNVSDKWADKALAGKMDRRRTFNGRAIVQLIAVRLTAALR*
Ga0099830_100905591	3300009088	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADKALAGKKDRRRTFNGRAIVQLIAVRLTAALR*
Ga0099830_111268561	3300009088	Vadose Zone Soil	MSSKASFRPVPCIGGWQIVVTWPDARTEQLGFYSSEADAVRWINNVSDKWANKAVVGKKTRRIFNVGAIVQLVAAWRTVTNR*
Ga0099828_103361902	3300009089	Vadose Zone Soil	MNATPSFRPVPCKGGWQIVVTWPDARTEQLGIYSSEADAVRWISSVSEKWAHKALVGKQRSHHTFDGRAIVQLIAERLTTVFR*
Ga0099792_101466972	3300009143	Vadose Zone Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKRRRRAFNGKAFLQLIAIRLTTVFR*
Ga0105243_105698511	3300009148	Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNGRSL
Ga0105242_102846711	3300009176	Miscanthus Rhizosphere	VMNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNG
Ga0099796_100068357	3300010159	Vadose Zone Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNVSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR*
Ga0137393_114967011	3300011271	Vadose Zone Soil	FRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNASDKWADKALAGKKDRRRTFNGRAIVQLIAIRLTAAFR*
Ga0137388_114260211	3300012189	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADKALAGKKDRRRTFNGRAIVHLIAVRLTAALR*
Ga0137364_102988381	3300012198	Vadose Zone Soil	MNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDKWAIKALAEKKNRRRTLNGRAFLQLMAIRLTAVFR*
Ga0137383_105210511	3300012199	Vadose Zone Soil	PMNAKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDRWADKALAGKKDRRRNGRAIVQLIAVRLRAALR*
Ga0137363_103499122	3300012202	Vadose Zone Soil	MNAKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEDVKWINNLSDRWADKALAGKKDRRRNGRAIVQLIAVRLRAALR*
Ga0137363_103887842	3300012202	Vadose Zone Soil	PAMNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWTDKALAGKKYRRRTFNAKAIVQLIAVRLTAALR*
Ga0137363_106714632	3300012202	Vadose Zone Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNVSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLATVFR*
Ga0137363_107932281	3300012202	Vadose Zone Soil	VTWPDARTEQLIGYSSEAEAVKWINNLSDRWADKALAAKKDRRRTFNGRAFLQLIAIRLTAFYSQHISRSRSAS*
Ga0137363_110892152	3300012202	Vadose Zone Soil	MSSNASFRPVPCIGGWQIVVTWPDARTEQLGFYSSEADAVRWINNVSDKWANKAVVGKKTRRRIFNVGAIVQLVAAWRTVNK*
Ga0137377_107928312	3300012211	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSGKWADKALAGKKNRRRTFNGKAFLQLIAIRLTAALR*
Ga0137387_110888801	3300012349	Vadose Zone Soil	MNAKPSFRPVPCNGGWQILVTWPDARTEQLGGYSSETEAVKWINNVSDKWTDKALAGKKYRRRTFNAKAIVQLIAVRLTAALR*
Ga0137384_101024413	3300012357	Vadose Zone Soil	MNAKPSFRPVPCHGGWQILVTWPDARTEQLIGYSSEAEAVKWINNLSDRWADKALAAKKDRRRTFNGRAFLQLIAIRL
Ga0137384_107033811	3300012357	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADKALAGKKDRRRSFNGRAIVQLIAVRLTAALR*
Ga0137360_102623381	3300012361	Vadose Zone Soil	MNAKPSFRPVPCNGGWQILVTWPDARTEQLGGYSSETEAVKWINNVSDKWTDKALAGKKYRRGTFNVKAIVQLIAVRLTAALR*
Ga0137361_113731571	3300012362	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADRALAGKKDRRRTFNGRAIVHLIAVRLTAALR*
Ga0137358_1000247610	3300012582	Vadose Zone Soil	MNAKPIFRPVPCNGSWQILVTWPDARTEQFGGYASEAEAVRWINNVSDRWTANVLAGNQRRHTRNGRSIIQIIAERLH*
Ga0137358_109496672	3300012582	Vadose Zone Soil	GGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDRWAVKALAKKKDRRRTLHGRAFLQLLAIRLTAVFR*
Ga0137395_109641551	3300012917	Vadose Zone Soil	AKIFLFSPDPNQFTDSPRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKRRRRAFNGKAFLQLIAIRLTTVFR*
Ga0137394_108698352	3300012922	Vadose Zone Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFNGKAFLQLIAIRLTTVFR*
Ga0137394_111686491	3300012922	Vadose Zone Soil	APMNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDRWADKALAGKKDRRRTFNARAIVQLIAVRLRAALS*
Ga0137359_102629751	3300012923	Vadose Zone Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLNGYLSEAEAVKWVNIHSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR*
Ga0137413_115245361	3300012924	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWTDKALAGKKGRRRTFNARAIVQLIAVRLTAALR*
Ga0137416_116984602	3300012927	Vadose Zone Soil	MNAKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDRWADKALAGKKDRRRNGRAIVQLIAVRLRAALR*
Ga0164299_105983092	3300012958	Soil	MNVKPSFRPVPCNGSWQIVVTWPDARTELLAGYPSEAEAVRWINNVSDRWTANVLAGNQRRHNRNGRSIVQV
Ga0164309_111409552	3300012984	Soil	MNAKPSFRPVPCLGGGQILVTWPDARTEQLSGYSSEAEAVKWISNVSQKWADKALAGKKDRRRNGRAIVQLIAVRLRAALR*
Ga0120158_100318943	3300013772	Permafrost	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADRALAGKKDRRPTFNGRAIVQLIAVRLTAALR*
Ga0120158_103200011	3300013772	Permafrost	MSSKASFRPVPCIGGWQIVVTGPDARTEQLGFYSSEADAVRWINNVSDKWANKAVVGKKTRRRIFNVGAIVQLVAAWRTVTNR*
Ga0157380_105953841	3300014326	Switchgrass Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTANVLAGNQRRHARNGRSLVRLIAERLHLAD
Ga0157377_116149931	3300014745	Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNGRSLVRLIAERLH
Ga0137412_112252471	3300015242	Vadose Zone Soil	MNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDRWADKALAGKKDRRRNGRAIVQLIAVRLRAALR*
Ga0132256_1021952671	3300015372	Arabidopsis Rhizosphere	MNAKPSFRPVPCNGGWQIHVTWPNAQTEVFGGYPSEADAVRWINNVSDRWTANVLAGNQRQHTRNGRSIIQIIAERLHLAEQR*
Ga0163161_100122078	3300017792	Switchgrass Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSDRWTANVLAGNQRRHARNGRSLVQLIADRLHLADG
Ga0184611_10254144	3300018067	Groundwater Sediment	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTANVLAGNQRRHARNGRSLVRLIAERLHLADG
Ga0066667_110338581	3300018433	Grasslands Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNASDKWADRALVGKKDRRRTFNGRAIVQLIAVRL
Ga0066662_115300932	3300018468	Grasslands Soil	MNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDRWAVKALAKKKDRRRTLHGRAFLQLMAIRLTAVFR
Ga0190270_117457001	3300018469	Soil	MNAKPNFRPVPRNGGWQIHVTWPDARTEQLGGFLSEAEAVQWINNVSDKWTVSASTGTRRRRTRNGRSIIEIMAERLHFAGR
Ga0193729_12464352	3300019887	Soil	MSSKASFRPVPCIGGWQIVVTWPDARTEQLGFYSSEADAVRWINNVSDKWANKAVVGKKTRRRIFNVGAIVQLVAAWHTVTNR
Ga0193751_10332442	3300019888	Soil	MNATPSFRPVPCKGGWQIVVTWPDARTEQLGIYSSEADAVRWISSVSEKWAHQALVRKQRSHHTFDGRAIVQLIAERLTAVFR
Ga0193751_10834151	3300019888	Soil	MSSKASFRPVPCIGGWQIVVTWPDARTEQLGFYSSEADAVTWINNVSDKWANKAVVGKKTRRRIFNVGAIVQLVAAWRTVTNR
Ga0179592_102621101	3300020199	Vadose Zone Soil	GGWQILVTWPDARTEQLSGYSSEAEAVKWINNVSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0179592_104571171	3300020199	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWTDKALAGKKYRRRTFNAKAIVQLIAVRLTAALR
Ga0179596_103681651	3300021086	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKRRRRAFNGKAFLQLIAIRLTTVFR
Ga0210408_107699462	3300021178	Soil	MNTKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAAKKDRRRAFNGRAFLQLIAIRLTAVFR
Ga0210402_103926211	3300021478	Soil	MNAKPSFRPVPCPGGWQILVTWPDARSEQLGGYSSEAEAVKWINNVSDKWADRALAGKKDRRRTFNGRAIVQLIAVRLTAALR
Ga0193742_10258233	3300021976	Soil	MIAKPSFRPVPCNGGWQIKVTWPDARTEHLSGYPSEADAIKWINNVSDKWAANVSTRNNRLHTRNGRWIIQIIAARLPFADG
Ga0179589_101178103	3300024288	Vadose Zone Soil	MNAKPSFRPVPCRGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0207697_100273083	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNGRSLVRLIAERLHLADG
Ga0207680_105406062	3300025903	Switchgrass Rhizosphere	NFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSDRWTANVLAGNQRRHARNGRSLVRLIAERLHLADG
Ga0207684_103450301	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNARPSFRPVPSNTGWQIVVTWPDARTEQLGGYSSEAEAVKWINNASDRWADKAMAGKKYRRRGFNAFVQLIDVRLTAAISRCVDRVRACRKRTASP
Ga0207646_103769954	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNARPSFRPVPCNAGWQIVVTWPDARTEQLGGYSSEAEAVKWINNASDRWADKAMAGKKYRRRGFNAFVQLIDVRLTAAISRCVDRVRACRKRTASP
Ga0207709_103970613	3300025935	Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNISNRWTANVLAGNQRRHARNGRSLV
Ga0207669_100494644	3300025937	Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTANVLAGNQRRHARNGRSLVQLIADRLHLADG
Ga0207691_100921796	3300025940	Miscanthus Rhizosphere	MNAKPNFRPVPCNGGWQIHVTWPDARTEVLGGYPSEAEAVRWINNVSNRWTAHVLAGNQRRHARNGRSLVQLIADRLHLADG
Ga0209438_10897142	3300026285	Grasslands Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAEKKDRRRTFNGRAFLQLIAIRLTAVFR
Ga0209240_10575632	3300026304	Grasslands Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0209131_11211682	3300026320	Grasslands Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSEAEAVKWINNVSDKWADKALAGKMDRRRTFNGRAIVQLIAVRLTAALR
Ga0209131_12885461	3300026320	Grasslands Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFKGKAFLQLIAI
Ga0209131_13838601	3300026320	Grasslands Soil	MNAKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAEKKDRRRAFNGRAFLQLIAIRL
Ga0257148_10075131	3300026345	Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFKGKAF
Ga0257146_10542101	3300026374	Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLIGYSSEAEAVKWINNVSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0257160_10453341	3300026489	Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAERKGRRRAFKGKAFLQ
Ga0257159_10207362	3300026494	Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLNGYSSEAEAVKWINNLSDKWADKALAERKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0257164_10540061	3300026497	Soil	MNAKPSFRPVPCHGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDRWADKALAAKKDRRRTFNGRAFLQLIAIRLTAFYSQHISRSRSAS
Ga0209648_102957382	3300026551	Grasslands Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNLSDKWADKALAGRKRRRRAFNGKAFLQLIAIRLTTVFR
Ga0209648_106619421	3300026551	Grasslands Soil	MNATPSFRPVPCKGGWQIVVTWPDARTEQLGIYSSEADAVRWISSVSEKWAHKALVGKQRSHHTFDGRAIVQLIAERLTTVFR
Ga0179587_111359061	3300026557	Vadose Zone Soil	KPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNVSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0208575_10096743	3300026920	Soil	MNTKPSFRPVPCHGGWQILVTWPDARTEQLRGYSSEAEAVKWINNLSDRWADKALAGKKDRRRNGRAIIQLIAVRLRAALR
Ga0209180_100890151	3300027846	Vadose Zone Soil	MNAKPSFRPVPCPGGWQILVTWPDARTEQLGGYSSETEAVKWINNVSDKWADKALAGKMDRRRTFNGRAIVQLIAVRLTAALR
Ga0209180_106735932	3300027846	Vadose Zone Soil	MNATPSFRPVPCKGGWQIVVTWPDARTEQLGIYSSEADAVRWISSVSEKWAHKALVGKQRSHHTFDGRAIVQLIAER
Ga0209488_106937881	3300027903	Vadose Zone Soil	MNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDRWAVKALAKKKDRRRTLHGRAFLQLLAIRLTAVFR
Ga0257175_11229322	3300028673	Soil	MNAKPSFRPVPCLGGWQILVTWPDARTEQLSGYSSEAEAVKWINNVSDKWADKALAGRKGRRRAFKGKAFLQLIAIRLTTVFR
Ga0170824_1064252301	3300031231	Forest Soil	MNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEADAVKWINNLSDKWAVKALAEKKDRRRTLNGRAFLQLMAIRLTAVFR
Ga0170820_171399692	3300031446	Forest Soil	MNAKPSFRPVPCHGGWQIVVTWPDARTEQLIGYSSEAEAVKWINNLSDKWADKALAGRKGRRRAFNGKAFLQLIAIRLTTAFR
Ga0170818_1057206572	3300031474	Forest Soil	MNAKPSFRPVPCHDGWQILVTWPDARTEQLSGYSSEAEAVKWINNVSERWADKALAGKKDRRRNGRAIIQLIAVRL
Ga0170818_1093807232	3300031474	Forest Soil	QIVVTWPDARTEQLIGYSSEAEAVKWINNLSDKWAVKALAEKKDRRRTLNGRAFLQLMAIRLTAVFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103818

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences