Metagenome Family F103816

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103816
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	40 residues
Representative Sequence	NQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVV
Number of Associated Samples	62
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.90 %
% of genes near scaffold ends (potentially truncated)	63.37 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (61.386 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.762 % of family members)
Environment Ontology (ENVO)	Unclassified (35.644 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.62% β-sheet: 0.00% Coil/Unstructured: 52.38%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13676	TIR_2	2.97
PF16095	COR	2.97
PF12799	LRR_4	2.97
PF00106	adh_short	2.97
PF07723	LRR_2	1.98
PF00560	LRR_1	1.98
PF13516	LRR_6	1.98
PF02826	2-Hacid_dh_C	0.99
PF03200	Glyco_hydro_63	0.99
PF01909	NTP_transf_2	0.99
PF01048	PNP_UDP_1	0.99
PF04389	Peptidase_M28	0.99
PF03235	DUF262	0.99
PF13546	DDE_5	0.99
PF01526	DDE_Tnp_Tn3	0.99
PF00483	NTP_transferase	0.99
PF13504	Obsolete Pfam Family	0.99
PF00171	Aldedh	0.99
PF02577	BFN_dom	0.99
PF03060	NMO	0.99
PF13602	ADH_zinc_N_2	0.99
PF13610	DDE_Tnp_IS240	0.99
PF00108	Thiolase_N	0.99
PF02679	ComA	0.99
PF00140	Sigma70_r1_2	0.99
PF10926	DUF2800	0.99
PF00196	GerE	0.99
PF00206	Lyase_1	0.99
PF05708	Peptidase_C92	0.99
PF08843	AbiEii	0.99
PF16684	Telomere_res	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4886	Leucine-rich repeat (LRR) protein	Transcription [K]	1.98
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.99
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.99
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.99
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.99
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.99
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.99
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.99
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	0.99
COG1479	DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains	Defense mechanisms [V]	0.99
COG1809	Phosphosulfolactate synthase, CoM biosynthesis protein A	Coenzyme transport and metabolism [H]	0.99
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.99
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.99
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.99
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.99
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
All Organisms	root	All Organisms	38.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
cellular organisms	root	All Organisms → cellular organisms	38.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	12.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	6.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.98 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	1.98 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.99 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	5.94 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.98 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1.98 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.99 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	2.97 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	2.97 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1.98 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.99 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.99 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.99 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.99 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2.97 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	2.97 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1.98 %
Leptolyngbyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae	0.99 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.99 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.99 %
Desulfobulbaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae	0.99 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Fimbriiglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus	2.97 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	2.97 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	1.98 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.99 %
Desulfobulbus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus	0.99 %
Leptolyngbya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	0.99 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.99 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2.97 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	2.97 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1.98 %
Desulfobulbus oralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus oralis	0.99 %
unclassified Leptolyngbya	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya	0.99 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.99 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.99 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.39 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.96 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2.97 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	2.97 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1.98 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.99 %
Leptolyngbya sp. PCC 7375	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. PCC 7375	0.99 %
Desulfobulbus oralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus oralis	0.99 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.99 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01BVNST	Not Available	519	Open in IMG/M
3300002245\|JGIcombinedJ26739_100854346	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300003219\|JGI26341J46601_10222761	Not Available	507	Open in IMG/M
3300004152\|Ga0062386_100223499	Not Available	1486	Open in IMG/M
3300004152\|Ga0062386_100281930	Not Available	1322	Open in IMG/M
3300004152\|Ga0062386_100383372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus oralis	1130	Open in IMG/M
3300004152\|Ga0062386_100588191	Not Available	909	Open in IMG/M
3300004152\|Ga0062386_100686705	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	840	Open in IMG/M
3300004152\|Ga0062386_100822244	Not Available	766	Open in IMG/M
3300004152\|Ga0062386_101330375	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	598	Open in IMG/M
3300004152\|Ga0062386_101553138	Not Available	552	Open in IMG/M
3300005468\|Ga0070707_102180507	Not Available	521	Open in IMG/M
3300005536\|Ga0070697_101408302	Not Available	622	Open in IMG/M
3300005764\|Ga0066903_108788489	Not Available	513	Open in IMG/M
3300006028\|Ga0070717_10670558	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300006172\|Ga0075018_10687957	Not Available	552	Open in IMG/M
3300006173\|Ga0070716_100998535	Not Available	662	Open in IMG/M
3300009176\|Ga0105242_11884402	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300009665\|Ga0116135_1022423	Not Available	2163	Open in IMG/M
3300010048\|Ga0126373_12102177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	626	Open in IMG/M
3300010339\|Ga0074046_10072361	Not Available	2248	Open in IMG/M
3300010339\|Ga0074046_10925355	Not Available	505	Open in IMG/M
3300010341\|Ga0074045_10234730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1217	Open in IMG/M
3300010376\|Ga0126381_102105936	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300012202\|Ga0137363_10007266	All Organisms → cellular organisms → Bacteria	6938	Open in IMG/M
3300012202\|Ga0137363_10320323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1277	Open in IMG/M
3300012202\|Ga0137363_10477373	Not Available	1045	Open in IMG/M
3300012582\|Ga0137358_10682451	Not Available	687	Open in IMG/M
3300012923\|Ga0137359_10452434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1136	Open in IMG/M
3300016270\|Ga0182036_10276210	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	1268	Open in IMG/M
3300016270\|Ga0182036_10325035	Not Available	1178	Open in IMG/M
3300016270\|Ga0182036_10607744	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300016270\|Ga0182036_11429776	Not Available	579	Open in IMG/M
3300016294\|Ga0182041_10906432	Not Available	793	Open in IMG/M
3300016357\|Ga0182032_10045714	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	2803	Open in IMG/M
3300016357\|Ga0182032_11390510	Not Available	607	Open in IMG/M
3300016387\|Ga0182040_10517521	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300016387\|Ga0182040_11326673	Not Available	608	Open in IMG/M
3300016404\|Ga0182037_10048686	Not Available	2819	Open in IMG/M
3300016404\|Ga0182037_11171573	Not Available	674	Open in IMG/M
3300016404\|Ga0182037_11284358	Not Available	645	Open in IMG/M
3300016422\|Ga0182039_10537027	Not Available	1015	Open in IMG/M
3300016422\|Ga0182039_10735642	Not Available	872	Open in IMG/M
3300016445\|Ga0182038_10058194	Not Available	2621	Open in IMG/M
3300017975\|Ga0187782_11526759	Not Available	526	Open in IMG/M
3300018034\|Ga0187863_10123404	Not Available	1448	Open in IMG/M
3300018037\|Ga0187883_10460374	Not Available	654	Open in IMG/M
3300018042\|Ga0187871_10200236	Not Available	1117	Open in IMG/M
3300020582\|Ga0210395_11101139	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	586	Open in IMG/M
3300021088\|Ga0210404_10808674	Not Available	536	Open in IMG/M
3300021178\|Ga0210408_10198006	Not Available	1597	Open in IMG/M
3300021361\|Ga0213872_10019387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3133	Open in IMG/M
3300021361\|Ga0213872_10133190	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300021372\|Ga0213877_10004625	All Organisms → cellular organisms → Bacteria → Proteobacteria	3228	Open in IMG/M
3300021372\|Ga0213877_10089550	Not Available	925	Open in IMG/M
3300021372\|Ga0213877_10213645	Not Available	630	Open in IMG/M
3300021405\|Ga0210387_10695754	Not Available	901	Open in IMG/M
3300021444\|Ga0213878_10023362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2294	Open in IMG/M
3300021444\|Ga0213878_10041749	Not Available	1771	Open in IMG/M
3300021444\|Ga0213878_10045815	Not Available	1697	Open in IMG/M
3300021444\|Ga0213878_10047713	Not Available	1666	Open in IMG/M
3300021444\|Ga0213878_10062602	Not Available	1469	Open in IMG/M
3300021444\|Ga0213878_10071487	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300021444\|Ga0213878_10104006	Not Available	1154	Open in IMG/M
3300021444\|Ga0213878_10157709	Not Available	943	Open in IMG/M
3300021444\|Ga0213878_10401017	Not Available	597	Open in IMG/M
3300021559\|Ga0210409_10577390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	992	Open in IMG/M
3300025612\|Ga0208691_1150470	Not Available	524	Open in IMG/M
3300025910\|Ga0207684_10828945	Not Available	781	Open in IMG/M
3300025910\|Ga0207684_11146009	Not Available	646	Open in IMG/M
3300025922\|Ga0207646_11277424	Not Available	642	Open in IMG/M
3300027812\|Ga0209656_10002332	All Organisms → cellular organisms → Bacteria	12296	Open in IMG/M
3300027812\|Ga0209656_10034372	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300027812\|Ga0209656_10044561	Not Available	2545	Open in IMG/M
3300027824\|Ga0209040_10042618	All Organisms → cellular organisms → Bacteria → Proteobacteria	2788	Open in IMG/M
3300027824\|Ga0209040_10371633	Not Available	672	Open in IMG/M
3300031525\|Ga0302326_10854665	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1302	Open in IMG/M
3300031573\|Ga0310915_10611606	Not Available	772	Open in IMG/M
3300031719\|Ga0306917_11080747	Not Available	625	Open in IMG/M
3300031744\|Ga0306918_11062044	Not Available	628	Open in IMG/M
3300031770\|Ga0318521_10833415	Not Available	563	Open in IMG/M
3300031833\|Ga0310917_10046320	Not Available	2651	Open in IMG/M
3300031879\|Ga0306919_10139690	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1756	Open in IMG/M
3300031890\|Ga0306925_10092991	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300031890\|Ga0306925_11528310	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300031942\|Ga0310916_10540121	Not Available	992	Open in IMG/M
3300031945\|Ga0310913_10142317	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300031946\|Ga0310910_10503590	Not Available	961	Open in IMG/M
3300031946\|Ga0310910_10769298	Not Available	759	Open in IMG/M
3300031947\|Ga0310909_10125527	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	2089	Open in IMG/M
3300031954\|Ga0306926_11380005	Not Available	819	Open in IMG/M
3300032001\|Ga0306922_10258491	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1872	Open in IMG/M
3300032041\|Ga0318549_10544105	Not Available	521	Open in IMG/M
3300032076\|Ga0306924_10182713	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	2407	Open in IMG/M
3300032261\|Ga0306920_103134536	Not Available	620	Open in IMG/M
3300032955\|Ga0335076_10243062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1695	Open in IMG/M
3300032955\|Ga0335076_10283239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya → unclassified Leptolyngbya → Leptolyngbya sp. PCC 7375	1549	Open in IMG/M
3300032955\|Ga0335076_11212721	Not Available	638	Open in IMG/M
3300033289\|Ga0310914_10051800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3387	Open in IMG/M
3300033289\|Ga0310914_11150900	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300033289\|Ga0310914_11407250	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.23%
Aquatic	Environmental → Aquatic	19.80%
Plants	Host-Associated → Plants	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.24%
Freshwater	Environmental → Aquatic → Freshwater	18.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%
Sediment	Environmental → Aquatic → Sediment	0.99%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.81%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	13.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	11.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_5395670	2035918004	Soil	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVING
JGIcombinedJ26739_1008543461	3300002245	Forest Soil	XKPQNITDDIFLAQILGHKLLGPNASFSVGQSYKDFYIRNG*
JGI26341J46601_102227611	3300003219	Bog Forest Soil	KPKNMTEDIFIAEILGHKLLPGAAALSVGQSYKDFYVAGG*
Ga0062386_1002234991	3300004152	Bog Forest Soil	CHKFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVR*
Ga0062386_1002819301	3300004152	Bog Forest Soil	RSAYGAMCCHKFKPQNMTDVQILGHKLLGPNAVGQSYKDFYVK*
Ga0062386_1003833722	3300004152	Bog Forest Soil	PKNQTDDIFLAQILGHKLLGPNASLSVRQSYKDFYIRMP*
Ga0062386_1005881911	3300004152	Bog Forest Soil	CHMFKPKNITDDIFLAQILGHKLLGPNASLSVGQSYKDFYIRKP*
Ga0062386_1006867052	3300004152	Bog Forest Soil	HKFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYIRKR*
Ga0062386_1008222441	3300004152	Bog Forest Soil	MFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYIR*
Ga0062386_1013303752	3300004152	Bog Forest Soil	MIVPGNRHSRFKLKNITDDIFLAQILGHKILGPNASLSQSYKDFYVRLG*
Ga0062386_1015531383	3300004152	Bog Forest Soil	FKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGA*
Ga0070707_1021805072	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	YGAICCHLFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVETA*
Ga0070697_1014083021	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	KNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVETA*
Ga0066903_1087884891	3300005764	Tropical Forest Soil	KNQTDDIFLAQILGHQLLGPNASLSVGQSYKDFYVVGG*
Ga0070717_106705583	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	CHRFKPKNMTEDIFIAEILGHKLLPGATALSVGQRYKDFYVKS*
Ga0075018_106879571	3300006172	Watersheds	KPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYIRKP*
Ga0070716_1009985352	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	INMTEDIFIAEILGHKLLPGATALSVGQSYKDFYIRNG*
Ga0105242_118844021	3300009176	Miscanthus Rhizosphere	YGAICCHLFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGD*
Ga0116135_10224232	3300009665	Peatland	MTDDIFLAQILGHKLLGPNAALSGGQSYKDFFVK*
Ga0126373_121021771	3300010048	Tropical Forest Soil	PKKQTDDIFLAKIIGHKLLGPNASLSVGQSYKGFYVV*
Ga0074046_100723611	3300010339	Bog Forest Soil	MCCHKFKPQNMTDVQILGHKLLGPNAVGQSYKDFYVK*
Ga0074046_109253552	3300010339	Bog Forest Soil	MTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVER*
Ga0074045_102347304	3300010341	Bog Forest Soil	FKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYISKV*
Ga0126381_1021059361	3300010376	Tropical Forest Soil	TDDIFLAQILGHKLLGPNASLSFGQSYNNFYVKR*
Ga0137363_100072661	3300012202	Vadose Zone Soil	ICCHLFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGD*
Ga0137363_103203233	3300012202	Vadose Zone Soil	MTEDIFIAEILGHKLLPGATALSVGQSYKDFYIRKP*
Ga0137363_104773732	3300012202	Vadose Zone Soil	MTEDIFIAEILGHKLFPGATALSVGQSYKDFYVVETA*
Ga0137358_106824512	3300012582	Vadose Zone Soil	AYSAICCQKFKPQNMTDDIFISEILGHKLLPGAAALSVGQSYKDFYIRNG*
Ga0137359_104524342	3300012923	Vadose Zone Soil	MTEDIFLAQILGHKLLPGAAALSVGQSYKDFYVVGD*
Ga0182036_102762101	3300016270	Soil	ICCHKFKPQNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVG
Ga0182036_103250352	3300016270	Soil	MADDIFLAQILGHKLLPGAAGLSIGKSYKDFYVVGT
Ga0182036_106077441	3300016270	Soil	NMTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVKESPTKP
Ga0182036_114297761	3300016270	Soil	GAICRHRFKPKNMTDDIFLAQILGDELLGPNAVLSVGHSYKDFYVEA
Ga0182041_109064321	3300016294	Soil	SAYGAICCHKFKPRNQTDDIFLAQILGHELLAPNASLSVGQSYKDFYVAGE
Ga0182032_100457141	3300016357	Soil	NMTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVKESPIKP
Ga0182032_113905102	3300016357	Soil	CCHKFKPQNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVG
Ga0182040_105175211	3300016387	Soil	FKPRNQTDDIFLAQILGHKLLGPNAALSVGQSYKDFYVAGT
Ga0182040_113266732	3300016387	Soil	MADDIFLAQILGHKLLPGAAGLSVGQSYKDFYVVGM
Ga0182037_100486861	3300016404	Soil	ICCHKFKPQNQTDDIFLAQILGHKLLGPNPSLSVGQSYKDFYVVEK
Ga0182037_111715731	3300016404	Soil	NQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVV
Ga0182037_112843581	3300016404	Soil	KPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVAG
Ga0182039_105370271	3300016422	Soil	KFKPRNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVEG
Ga0182039_107356421	3300016422	Soil	PQNQTDDIFLAQILGHKLLGPNPSLSVGQSYKDFYVVEK
Ga0182038_100581946	3300016445	Soil	MADDIFLAQILGHKLLPGAAGLSIGKSYKDFYVVGM
Ga0187782_115267592	3300017975	Tropical Peatland	VDAPYGAICCPKFKPKNMTDDIFLAQILGHKLLPGTAALSVGQSYKDFYVRN
Ga0187863_101234043	3300018034	Peatland	NMTDDIFLAQILGHKLLGPNAALSGGQSYKDFFVK
Ga0187883_104603742	3300018037	Peatland	FCCHFFKPKNMTDDIFLAQILGHKLLGPNAALSGGQSYKDFFVK
Ga0187871_102002364	3300018042	Peatland	KNMTDDIFLAQILGHKLLGPNAALSVGQSYKDFYVA
Ga0210395_111011391	3300020582	Soil	KNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYIRKP
Ga0210404_108086742	3300021088	Soil	MESRPPVKRYGAICCHLFKPENITIDIFLAQILAHKPLPGAAALFVGQSYNDF
Ga0210408_101980062	3300021178	Soil	MESRPPAKRYGAICCHLFKPENITIDIFLAQILAHKPLPGAAALFVGQSYNDFYVAES
Ga0213872_100193873	3300021361	Rhizosphere	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVVASPHTK
Ga0213872_101331901	3300021361	Rhizosphere	RFKPKNMTDDIFLAEILGHKLLPGSAALSVGQSYKDFYVVD
Ga0213877_100046252	3300021372	Bulk Soil	MTDDIFLAEILGHKLLPGAAALSMGQSYKDFYVKE
Ga0213877_100895502	3300021372	Bulk Soil	ALRNMTDDIFLAQILGHKLLGPNASLSIGQSYKDFYVVGK
Ga0213877_102136451	3300021372	Bulk Soil	MTDDIFLAEILGHKLLPGAAALSVGQSYKDFYVKQ
Ga0210387_106957541	3300021405	Soil	QTIDIFLAQILGPNASLSVGQNHKDLHSLVLSPYC
Ga0213878_100233623	3300021444	Bulk Soil	MTPDIFMAEILGHKLLPGSAALSVGQSYKDFYVKQ
Ga0213878_100417491	3300021444	Bulk Soil	LIFPKNMTDDIFLGEILGHKLLPGTAALSVGQSYKDFHVVG
Ga0213878_100458152	3300021444	Bulk Soil	MYTALRNMTDDIFLAQILGHKLLGPNASLSIGQSYKDFYVVGK
Ga0213878_100477135	3300021444	Bulk Soil	MTDDIFMAEILGHKLLPGAAALSVGQSYKDFYVRN
Ga0213878_100626022	3300021444	Bulk Soil	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVKP
Ga0213878_100714872	3300021444	Bulk Soil	MTDDIFLAEILGHKLLPGAAALSVGQSYKDFYVVGK
Ga0213878_101040062	3300021444	Bulk Soil	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVAGK
Ga0213878_101577092	3300021444	Bulk Soil	LYAAFPGNMTDDIFLAEILGHKLLPGAAALSVGQSYKDFYVK
Ga0213878_104010171	3300021444	Bulk Soil	RFKPKNMTDDIFLAEILGHKLLPGAAALSVGQSYKDFFVK
Ga0210409_105773903	3300021559	Soil	AICCHLFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVETA
Ga0208691_11504701	3300025612	Peatland	PKNITDDIFLAQILGHKLLGPNASLSVGQSYKDFYIR
Ga0207684_108289453	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ICCQKFKPQNMTDDIFLAQILGHKLLGPNAALSVGQSYKDFYIRTP
Ga0207684_111460091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GAICCHLFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGD
Ga0207646_112774241	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTEDIFIAEILGHKLLPGATALSVGQSYKDFYVVGA
Ga0209656_1000233211	3300027812	Bog Forest Soil	MTDDIFLAQILGHKLLGPNVSLSVGQSYKDFYIRKP
Ga0209656_100343723	3300027812	Bog Forest Soil	MTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVER
Ga0209656_100445614	3300027812	Bog Forest Soil	MCCHKFKPQNMTDVQILGHKLLGPNAVGQSYKDFYVK
Ga0209040_100426183	3300027824	Bog Forest Soil	MQIKMTEIIFLAQILSPNASLSVGQSYKDFYIRKP
Ga0209040_103716332	3300027824	Bog Forest Soil	PKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYIR
Ga0302326_108546654	3300031525	Palsa	HKFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYIR
Ga0310915_106116062	3300031573	Soil	MADDIFLAQILGHKLLPGAAGLSIGQSYKDFYVVGM
Ga0306917_110807471	3300031719	Soil	HRFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVED
Ga0306918_110620441	3300031744	Soil	RNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVR
Ga0318521_108334152	3300031770	Soil	MTGDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGG
Ga0310917_100463201	3300031833	Soil	HKFKPQNQTDDIFLAQILGHKLLGPNPSLSVGQSYKDFYVVEK
Ga0306919_101396904	3300031879	Soil	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVKESPTKP
Ga0306925_100929915	3300031890	Soil	MTEDIFIADILGHKLLPGAAALSVGQSYKDFYVVGD
Ga0306925_115283102	3300031890	Soil	IFLAQILGHKLLPGAAALSVGQSYKDFYVKESPTKP
Ga0310916_105401212	3300031942	Soil	MADDIFLAQILGHKLLPGAAGLSVGQSYKDFYVVGT
Ga0310913_101423172	3300031945	Soil	MTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVG
Ga0310910_105035901	3300031946	Soil	TDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGG
Ga0310910_107692981	3300031946	Soil	ICCHKFKPRNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGE
Ga0310909_101255274	3300031947	Soil	IFLAQILGHKLLPGAAALSVGQSYKDFYVKESPIKP
Ga0306926_113800051	3300031954	Soil	MTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVED
Ga0306922_102584912	3300032001	Soil	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVKESPIKP
Ga0318549_105441051	3300032041	Soil	PQNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVG
Ga0306924_101827131	3300032076	Soil	KFKPRNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVV
Ga0306920_1031345362	3300032261	Soil	KPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVV
Ga0335076_102430621	3300032955	Soil	DIFLAQILGHKLLGPNASLSVGQSYKDFYVDVKRF
Ga0335076_102832393	3300032955	Soil	MTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVVGG
Ga0335076_112127211	3300032955	Soil	AICCHRFKPRNMTDDIFLAEILGHKLLPGAAALSVGQSYKDFYVVGD
Ga0310914_100518001	3300033289	Soil	HKFKPRNQTDDIFLAQILGHKLLGPNASLSIGQSYKDFYVVWK
Ga0310914_111509001	3300033289	Soil	ICCHLFKPRNMTDDIFLAQILGHKLLPGAAALSVGQSYKDFYVKESPIKP
Ga0310914_114072502	3300033289	Soil	ICCHKFKPKNQTDDIFLAQILGHKLLGPNASLSVGQSYKDFYVVGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103816

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences