NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103794

Metagenome Family F103794

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103794
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 66 residues
Representative Sequence ALGSVAYVGSPRVYRVVATGESGRVKKKITAIVDTGRTLENPLTLTPASEKAAGVLQYWREE
Number of Associated Samples 95
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 9.90 %
% of genes from short scaffolds (< 2000 bps) 9.90 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.040 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(8.911 % of family members)
Environment Ontology (ENVO) Unclassified
(32.673 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.505 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 11.11%    β-sheet: 18.89%    Coil/Unstructured: 70.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF11104PilM_2 22.77
PF05134T2SSL 11.88
PF02163Peptidase_M50 0.99
PF07994NAD_binding_5 0.99
PF02954HTH_8 0.99
PF01053Cys_Met_Meta_PP 0.99
PF08282Hydrolase_3 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG3297Type II secretory pathway, component PulLIntracellular trafficking, secretion, and vesicular transport [U] 11.88
COG1877Trehalose-6-phosphate phosphataseCarbohydrate transport and metabolism [G] 0.99
COG4100Cystathionine beta-lyase family protein involved in aluminum resistanceInorganic ion transport and metabolism [P] 0.99
COG3769Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamilyCarbohydrate transport and metabolism [G] 0.99
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.99
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 0.99
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 0.99
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.99
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.99
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 0.99
COG1260Myo-inositol-1-phosphate synthaseLipid transport and metabolism [I] 0.99
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.99
COG0561Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatasesCoenzyme transport and metabolism [H] 0.99
COG0560Phosphoserine phosphataseAmino acid transport and metabolism [E] 0.99
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.99
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.99
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.99
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.04 %
All OrganismsrootAll Organisms3.96 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005438|Ga0070701_10326041Not Available952Open in IMG/M
3300005616|Ga0068852_101502347Not Available696Open in IMG/M
3300005719|Ga0068861_100055841All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium3012Open in IMG/M
3300006358|Ga0068871_100553681Not Available1042Open in IMG/M
3300009036|Ga0105244_10462768Not Available583Open in IMG/M
3300012041|Ga0137430_1148618Not Available675Open in IMG/M
3300012901|Ga0157288_10296665Not Available564Open in IMG/M
3300015374|Ga0132255_103728488All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium648Open in IMG/M
3300025908|Ga0207643_10860138Not Available588Open in IMG/M
3300027855|Ga0209693_10620225All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae509Open in IMG/M
3300027907|Ga0207428_10051012All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium3308Open in IMG/M
3300031943|Ga0310885_10056570Not Available1649Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.95%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.97%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.97%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.97%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.97%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.98%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.98%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.98%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.98%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.98%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.98%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.98%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.98%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.99%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.99%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.99%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.99%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.99%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.99%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.99%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009036Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012041Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015203Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300022883Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4EnvironmentalOpen in IMG/M
3300023269Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6EnvironmentalOpen in IMG/M
3300024317Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01EnvironmentalOpen in IMG/M
3300025464Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025509Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028556Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaGHost-AssociatedOpen in IMG/M
3300028563Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaGHost-AssociatedOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300030000I_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030339III_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300031728Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrCHost-AssociatedOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10506591323300000364SoilSMPPITVSDGDLAKVAKVESPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTLNPAAEKAAGVLQYWREE*
Ga0063454_10165050413300004081SoilALGSVAYVGTPRVYRVASTGESGRVKKKITAIIDTGRALENPLTLTPQSEKAAGVLQYWREE*
Ga0062593_10337331213300004114SoilFQSMPPVIVTSADLAKVAKVESPRVYRVVATGVSGRVKKKITAIIDTKRLVENPLTLNPASEKAAGVLQYWREE*
Ga0070676_1131289513300005328Miscanthus RhizosphereIYRVVGTGTAGRVKKKITVIIDTKAVLSNPLTRNPDAERAAGVIQYWREE*
Ga0070676_1152554323300005328Miscanthus RhizosphereFQSMPPIVISDADLGKVAKVESPRVYRIVATGVSGRVKKKITAIIDTRRQVENPLTLNPGSEMAAGVLQYWREE*
Ga0070680_10119151323300005336Corn RhizosphereRVAASGESGRVKKKIITIVDTGRTIENLLTLNAASEKAAGVLQYWREE*
Ga0068868_10243503113300005338Miscanthus RhizosphereFQSMQPMKITEADLGRVAKVASPRVYRIVATGASGRVKKKITAIIDTKRELQNPLTINPGSEKAAGVLQYWREE*
Ga0070691_1057020113300005341Corn, Switchgrass And Miscanthus RhizosphereSKDALNQVAYVAPPRTYRVVATGESGKVKKKITAIIDTVRTIENPLSVNVASVQAAGALQYWREE*
Ga0070710_1121642323300005437Corn, Switchgrass And Miscanthus RhizosphereGPPRIYRIVAVGEAGKVKKKITAIVDTAGFLSNPLTLNATAEQAAGILRYWREE*
Ga0070701_1032604123300005438Corn, Switchgrass And Miscanthus RhizosphereDDPRYKIFQSMTPITISDGDIAKVAKVESPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE*
Ga0070711_10106343123300005439Corn, Switchgrass And Miscanthus RhizosphereYVGPPRVYRVTAAGESGGVKNVKKKITAILDTGRIVENPQTLDAASEKAAGVLQYWREE*
Ga0070711_10146991713300005439Corn, Switchgrass And Miscanthus RhizosphereNIAYVGSPRVYRVVSSGESGRVKRKITAIIDTGRALENPLTLTPQSEKAAGVLQYWREE*
Ga0070706_10076756113300005467Corn, Switchgrass And Miscanthus RhizosphereAFTGPPRIYRIVAVGEAGKVKKKITAIIDSGGFVANPLTLNPAAEKAAGVLRYWREE*
Ga0073909_1065395013300005526Surface SoilRASLDAVAYVGAPRSYRIVATGSSGKVKKKITAIVDTGRILENPLTINPASEQAAGVLQYWREE*
Ga0066670_1026962623300005560SoilFQSMPPITISDGDLAKVAKVESPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTLNPAAEKAAGILQYWREE*
Ga0070664_10055943223300005564Corn RhizosphereVAKVEPPRVYRIVATGESGRVKKKITVIVDTRRSLANALTLNPAAEKAAGVLQYWREE*
Ga0070763_1096958623300005610SoilALGSVAYVGSPRVYRVVATGESGRVKKKITAIVDTGRTLENPLTLTPASEKAAGVLQYWREE*
Ga0068852_10150234723300005616Corn RhizosphereRYRIFQGMRPIQIDAGQLGNLAYVGPPRVYRVAATGESGRVKKKIITIVDTGRTIENLLTLNAASEKAAGVLQYWREE*
Ga0068861_10005584113300005719Switchgrass RhizosphereKVEAPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE*
Ga0066903_10003921413300005764Tropical Forest SoilVASPRFYRIVATGVSGRVKKKITAIVDTGRGLDNPLTLNFAAEKAAGVLQYWREE*
Ga0074470_1125685013300005836Sediment (Intertidal)KMFQAMPPLTINKGELAKLAYVGSPRVYRIVATGESGRVKKKITAILDTGRIIENPFTLNPAAEKAAGVLQYWREE*
Ga0070716_10013259813300006173Corn, Switchgrass And Miscanthus RhizosphereDRASIDAVAYVGPPRTYRVVATGESGKVKKKITAIVDTGRWLEHPLTLNTEAERAAGIIQYWREE*
Ga0068871_10055368113300006358Miscanthus RhizosphereRYKIFQGMQPITINDGELAKIAKVDSPRVYRIVATGASGRVKKKITVIVDTRRSLSNALTLNPAAEKAAGVLQYWREE*
Ga0075426_1089525423300006903Populus RhizosphereKVAKVEAPRVYRIVATGASGRVKKKITAIVDTKRNPANPLTNNPAAEKAAGVLQYWREE*
Ga0105244_1046276813300009036Miscanthus RhizosphereRYKIFQSMTPITISDGDIAKVAKVESPRVYRIVATGTYGHVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE*
Ga0105242_1217446823300009176Miscanthus RhizosphereKVAKVESPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE*
Ga0105248_1339412323300009177Switchgrass RhizosphereRPLTVSKDALNQVAYVAPPRTYRIVATGESGKVKKKITVIVDTVRTIENPLTLNPASEQAAGALQYWREE*
Ga0105237_1116958823300009545Corn RhizosphereIFQGMQPITINDGELAKLAKVESPRVYRIVATGVSGRVKKKITAIIDTKRQLENPLTLNPAAEKAAGVLQYWREE*
Ga0134128_1224887723300010373Terrestrial SoilFQGMKPISVDAGALGGVAYVGTPRVYRVVASGESGRVKKKITAILDTGRIVENPQTRFPGAEKDAGVLQYWREE*
Ga0134128_1238123313300010373Terrestrial SoilKVVASGESGRVKRKVTAIIDTGRALENPLTLTPQSEKAAGVLQYWREE*
Ga0134127_1286881523300010399Terrestrial SoilIIVTSADLAKVAKVESPRVYRVVATGVSGRVKKKITAIIDTKRLVENPLTLNPGSEMAAGVLQYWREE*
Ga0134121_1121824423300010401Terrestrial SoilNVSKADLQRVAYVGSPRVYRIVATGESGKVKKKITAIVDTGRPLDNPMTLNIQSEQAAGVLQYWREE*
Ga0137430_114861813300012041SoilDDPRYKIFQSMPPIVISDADLAKVAKVESPRVYRVVATGVSGRVKKKITAIIDTKRLVENPLTLNPASEMAAGVLQYWREE*
Ga0137382_1099806913300012200Vadose Zone SoilLAKVAKVESPRVYRIVATGASGRVKKKITVIVDTRRSLANALTLNPAAEKAAGVLQYWREE*
Ga0150985_11038966613300012212Avena Fatua RhizosphereRYRVLSGMQPLTITKDALNQVAYVAPPRTYRIVATGQSGKVKKKITAIIDTVRTIENPLTVNVASEQAAGALQYWREE*
Ga0150985_11569052433300012212Avena Fatua RhizosphereTPAELGAVAYTASPRVYKIVAVGEAGKVKKKITAIVDSARSVTNPLQTLNPMAERAAGVLQYWREE*
Ga0137358_1076826823300012582Vadose Zone SoilLNVGDLSSVATFGSPRTYRIVAVGEAGKVKKKITAIVDTAGVLSHPLTLNSSAEQAAGVLRYWREE*
Ga0157288_1029666513300012901SoilRYKIFQGMRPIKIDQGELGRIAKVASPRVYRIVATGESGRVKRKITAIVDTQRVLENPLTLNPASEKAAGVLQYWREE*
Ga0157291_1034878313300012902SoilIKIDQGELAAVATVASPRVYRIVATGESGRVKRKITAIVDTQRVLENPLTLNPASEKAAGVLQYWREE*
Ga0157289_1037121523300012903SoilIFQGMRPIKIDQGALASVAKVSSPRVYRIVATGESGRVKRKITAIVDTQRVLENPLTLNPASEKAAGVLQYWREE*
Ga0126375_1126742413300012948Tropical Forest SoilTSSPRVYKIVAVGEAGKVKKKITAIVDSARSVTNPLQTLNPMAERAAGVIQYWREE*
Ga0126369_1263141123300012971Tropical Forest SoilGPVRVYRIVAVGEAGRVKRKITAIVDTGRGLENPLTLNVASEKAAGVLQYWREE*
Ga0164304_1075918423300012986SoilGDLAKVAKVESPRVYRVVATGTFGRVKKKITAIVDTKRVLANPQTLNPAAEKAAGILQYWREE*
Ga0164307_1128270913300012987SoilNQVATFGPPRIYRIVAVGEAGKVKKKITAIVDTAGFLSNPLTLNATAEQAAGILRYWREE
Ga0157378_1179095723300013297Miscanthus RhizosphereLQKVAYTGPPRVYRIVAVGEAGKVQKKITAIVDSGGFLENPITINPAAEKAAGVLRYWREE*
Ga0157372_1069529823300013307Corn RhizosphereRYRLFQGMKPIQIDAGALGNIAYVGSPRVYRVVASGESGRVKRKITAIIDTGRALENPLTLTPQSEKAAGVLQYWREE*
Ga0157375_1254604523300013308Miscanthus RhizosphereFQGMKPLNVDAGALGSVAYVGTPRVYRVASTGESGRVKKKITTIIDTGRALENPLTLTPQSEKAAGVLQYWREE*
Ga0157376_1040695023300014969Miscanthus RhizosphereKVESPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTLNPAAEKAAGVLQYWREE*
Ga0157376_1155053523300014969Miscanthus RhizosphereGALGSVAYVGTPRVYRVASTGESGRVKKKITTIIDTGRALENPLTLTPQSEKAAGVLQYWREE*
Ga0167650_101369233300015203Glacier Forefield SoilKPLTFDRAALDTVAYVGAPRVYRIVATGTSGKVKKKITAIIDSAKTLENPMTLNIQSEQAAGVLQYWREE*
Ga0132258_1006936793300015371Arabidopsis RhizosphereSMSPIAISDGDLAKVAKVEAPRVYRIVATGTYGRGKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE*
Ga0132256_10166042913300015372Arabidopsis RhizosphereKIFQSMRPITPNKGELGKLVQVESPRVYRIVATGASGKVKKKITAIVDSRRSLDNPQTLNPAAEKAAGVLQYWREE*
Ga0132255_10372848813300015374Arabidopsis RhizospherePDDPRYKFFQSMAPIQVNKGELSKLVNTDSPRVYRIVATGASGKVKKKITAIVDSRRSLDNPQTLNPAAEKAAGVLQYWREE*
Ga0182037_1136754513300016404SoilELRAELDKLAYVGPPRVYRIVATGASGRVKKKITAIVDTGRQLDNPLTLNPASEKAAGVLQYWREE
Ga0182038_1104805013300016445SoilRYKVFQSLRPIQINKGELAKLAYTGSPRVYRIVATGESGRVKKKITAIVDTGRTLDNPLTLNPASEQAAGVLQYWREE
Ga0066667_1128987613300018433Grasslands SoilVQITAGQLGNLAYVGPAGVYRGTSTGESGRVKKKITAIVDTGRTIENLMTLNAASEKAAGVLQYWREE
Ga0210387_1171093313300021405SoilLAIDAGALGSVAYVGSPRVYRVAATGESGRVKKKITAIVDTGRTLENPLTLTPQSEKAAGVLQYWREE
Ga0210392_1046167213300021475SoilPRVYRVAATGESGRVKKKITAIVDTGRTLENPLTLTPQSEKAAGVLQYWREE
Ga0247786_105707823300022883SoilMRPIKIDQGELAAVATVASPRVYRIVATGESGRVKRKITAIVDTQRVLENPLTLNPASEKAAGVLQYWREE
Ga0247773_111307023300023269Plant LitterLSGMKPLVINRDALDAVAYVFPPRTYRIVATGESGKVRKKITAIVDTQRDLDNPLTLNYGSEKAAGVIQYWREE
Ga0247660_100353333300024317SoilYKIFQSMPPVTINDGDLAKVAKVSAPRVYRIVATGSYGRVKKKITAILDTQRAIANPQTNNPAAEKAAGILQYWREE
Ga0208076_107824323300025464Arctic Peat SoilYTGSPRVYRIVAVGEAGKVKKKITAIVDSAGVLSNQLTLNPTAEQAAGVLRYWREE
Ga0208848_104887523300025509Arctic Peat SoilLLFPPDAYALGSLAYVGSPRVYRVTATGESGRVKKKITAIVDTGRTLENPLTLTPASEKAAGVFQYWREE
Ga0207699_1115622633300025906Corn, Switchgrass And Miscanthus RhizosphereIAYVGSPRVYRVVSSGESGRVKRKITAIIDTGRALENPLTLTPQSEKAAGVLQYWREE
Ga0207643_1086013823300025908Miscanthus RhizosphereMRPIEPNKGELGKLVQVESPRVYRIVATGASGKVKKKITAIVDSRRSLDNPQTLNPAAEKAAGVLQYWREE
Ga0207684_1104713223300025910Corn, Switchgrass And Miscanthus RhizospherePAALDLLAYVGAARTYRIVATGESGKVRKKITAIVDTERFVENPLSLNPQSEQAAGVIQYWREE
Ga0207695_1055343223300025913Corn RhizosphereRPDSPLGGVAYVGTPRVYRVVASGESGRVKKKITAILDTGRIVENPQTRFPGAEKDAGVLQYWREE
Ga0207671_1061558023300025914Corn RhizosphereELDKVAYVGPPRVYRIVATGTSGRVKKKITAILDTHRFLDNPLTNNPQSEQAAGVLQYWREE
Ga0207660_1094098323300025917Corn RhizosphereVGPSRVYRVAASGESGRVKKKIITIVDTGRTIENLLTLNAASEKAAGVLQYWREE
Ga0207657_1077241023300025919Corn RhizosphereMQPLSITKDALNQVAYVAPPRTYRIVATGESGKVKKKITAIIDTVRTIENPLTVNVASEQAAGALQYWREE
Ga0207701_1089888513300025930Corn, Switchgrass And Miscanthus RhizosphereQGMRPIKVDQGELGRVAKVASPRVYRIVATGESGRVKRKITAIVDTQRVLENPLTLNPASEKAAGVLQYWREE
Ga0207679_1053153013300025945Corn RhizosphereVAKVEPPRVYRIVATGESGRVKKKITVIVDTRRSLANALTLNPAAEKAAGVLQYWREE
Ga0207651_1017806723300025960Switchgrass RhizospherePIVINDGDLAKVAKVESPRVYRVVATGVSGRVKKKITAIIDTKRLVENPLTLNPASEKAAGVLQYWREE
Ga0207677_1196373213300026023Miscanthus RhizosphereFQSMQPMKITEADLGRVAKVASPRVYRIVATGASGRVKKKITAIIDTKRELQNPLTINPGSEKAAGVLQYWREE
Ga0207703_1173563123300026035Switchgrass RhizosphereMQQMRGLTITKQDLETVAYVGPPRVYRVVATGESGKVKKKITAVVDTGRTVENPMTLNPASEQAAGVLQYWREE
Ga0207683_1101727413300026121Miscanthus RhizosphereELGRVAKVASPRVYRIVATGESGRVKRKITAIVDTQRMLENPLTLNPQSEKAAGVLQYWREE
Ga0209234_130297613300026295Grasslands SoilSSSLPRVYRIVATGESGKVKKKITAIIDTGRTPEFPVTTNFQAEKAAGVLQYWREE
Ga0209274_1071301513300027853SoilGNLAYVGSPRVYRVTATGESGRVKKKITAIVDTGRTLENPLTLSPASEKAAGVFQYWREE
Ga0209693_1062022523300027855SoilMFQSMRPINIDSGALGNLAYVGSPRVYRVTATGESGRVKKKITAIVDTGRTLENPLTLTPASEKAAGVLQYWREE
Ga0209465_1052406713300027874Tropical Forest SoilPRYRIFQAMQGINVSAADLARVASVAPPRVYRVVAMGESGKVKKKITAIIDTNRVMANPLTLNVQAEQAAGVLQYWREE
Ga0207428_1005101213300027907Populus RhizosphereISDADLAKVAKVESPRIYRVVATGVSGRVKKKITAIIDTRRQVENPLTLNPGSEMAAGVLQYWREE
Ga0268264_1076336513300028381Switchgrass RhizosphereTISDGDIAKVAKVESPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE
Ga0268264_1224460013300028381Switchgrass RhizosphereKVAKVEAPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE
Ga0265337_116404323300028556RhizosphereVAPPRIYRITATGESGKVKKKITAIVDTGRVLENPMTLNPASEQAAGVLQYWREE
Ga0265319_124752423300028563RhizosphereVGTPRVYRVTATGESGRVKKKITAIVDTGRTLENPLTLTPQSEKAAGVLQYWREE
Ga0307503_1053993213300028802SoilLRPLTINKGELGKIAYVGSPRVYRIVATGESGRVTKKITAIVDTGRILENPLTLNPASEQAAGVLQYWREE
Ga0311337_1083937123300030000FenARSYKIVATGEAGKVKKKITVIVDTGKTLENPMTQNVQAEQAAGVLQYWREE
Ga0311333_1061818313300030114FenGALGSVAYVGSPRVYRVAATGESGRVKKKITAIVDTGRALENPLGNPLTMTPQSEKAAGVLQYWREE
Ga0311360_1149484623300030339BogLGSVAYVGSPRVYRVAATGESGRVKKKITAIVDTGRALENPLGNPLTMTPQSEKAAGVLQYWREE
Ga0310887_1081585013300031547SoilVIVSSADLAKVAKIESPRVYRVVATGVSGRVKKKITAIIDTRRQVENPLTLNPGSEMAAGVLQYWREE
Ga0265314_1062241713300031711RhizosphereKVGAPRIYRIVATGEAGKVKKKITVIVDSMGVLSSPLTLNPQAEQAAGVLRYWREE
Ga0316578_1016113423300031728RhizosphereNITKAQLEQVAYVGPPRVYRIVATGESGKVKKRITAILDTARSLDNPVTQDPASEKAAGVVQYWREE
Ga0318546_1119058113300031771SoilFQSLRPIQINKGELAKLAYTGSPRVYRIVATGESGRVKKKITAIVDTGRTLDNPLTLNPASEQAAGVLQYWREE
Ga0318517_1041580813300031835SoilVFQSLRPLTINKGELAKLAYTGSPRIYRIVATGESGRVKKKITAIVDTGRTLDNPLTLNPASEQAAGVLQYWREE
Ga0310907_1070520723300031847SoilKIFQSMSPIAISDGDLAKVAKVEAPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE
Ga0306925_1054557323300031890SoilRIVATGASGRVKKKITAIVDTGRQLDNPLTLNPASEKAAGVLQYWREE
Ga0310885_1005657013300031943SoilPRYKIFQSMSPIAISDGDLAKVAKVEAPRVYRIVATGTYGRVKKKITAILDTKRVLANPQTMNPAAEKAAGILQYWREE
Ga0310909_1163066713300031947SoilLAKLAYTGSPRIYRIVATGESGRVKKKITAIVDTGRTLDNPLTLNPASEQAAGVLQYWRE
Ga0308176_1078353513300031996SoilITITQQQLGTVAYVGNPRVYRIVATGESGKVKKKITAIIDTGRTLENPLTLTPQSEKAAGVLQYWREE
Ga0315271_1192580613300032256SedimentLQQLRGLNITRNDLGRVAYTGPARVYRVVATGESGKVKKKITAIIDTGRMVENPVTINPLFEKASGVLQYWREE
Ga0247829_1109266623300033550SoilPIKVDQGELGRIAKVSSPRVYRIVATGESGRVKRKITAIVDTQRVLENPLTLNPASEKAAGVLQYWREE


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