NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103764

Metagenome Family F103764

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103764
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 55 residues
Representative Sequence MNPRIRTIAIFLALALALPALAQASGTVPAGAKISVVTDQSVSSKTAKVGQT
Number of Associated Samples 70
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.03 %
% of genes near scaffold ends (potentially truncated) 98.02 %
% of genes from short scaffolds (< 2000 bps) 86.14 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (88.119 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(57.426 % of family members)
Environment Ontology (ENVO) Unclassified
(50.495 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(58.416 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 35.00%    β-sheet: 0.00%    Coil/Unstructured: 65.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF02569Pantoate_ligase 74.26
PF05163DinB 15.84
PF02548Pantoate_transf 4.95
PF03544TonB_C 0.99
PF02547Queuosine_synth 0.99
PF00578AhpC-TSA 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0414Panthothenate synthetaseCoenzyme transport and metabolism [H] 74.26
COG2318Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)Secondary metabolites biosynthesis, transport and catabolism [Q] 15.84
COG0413Ketopantoate hydroxymethyltransferaseCoenzyme transport and metabolism [H] 4.95
COG0809S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)Translation, ribosomal structure and biogenesis [J] 0.99
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms88.12 %
UnclassifiedrootN/A11.88 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002916|JGI25389J43894_1092660All Organisms → cellular organisms → Bacteria → Acidobacteria540Open in IMG/M
3300005175|Ga0066673_10334382Not Available884Open in IMG/M
3300005176|Ga0066679_10122928All Organisms → cellular organisms → Bacteria1602Open in IMG/M
3300005177|Ga0066690_10041246All Organisms → cellular organisms → Bacteria2766Open in IMG/M
3300005177|Ga0066690_10138420All Organisms → cellular organisms → Bacteria1593Open in IMG/M
3300005450|Ga0066682_10703487All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300005451|Ga0066681_10253966All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Tuwongella → Tuwongella immobilis1067Open in IMG/M
3300005559|Ga0066700_10293106All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Tuwongella → Tuwongella immobilis1145Open in IMG/M
3300005569|Ga0066705_10620304All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
3300006173|Ga0070716_100754194All Organisms → cellular organisms → Bacteria → Acidobacteria749Open in IMG/M
3300006791|Ga0066653_10466297All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
3300006796|Ga0066665_10040840All Organisms → cellular organisms → Bacteria3129Open in IMG/M
3300007255|Ga0099791_10089061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1413Open in IMG/M
3300007255|Ga0099791_10124557All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300007258|Ga0099793_10168503All Organisms → cellular organisms → Bacteria1043Open in IMG/M
3300007265|Ga0099794_10351562All Organisms → cellular organisms → Bacteria → Acidobacteria767Open in IMG/M
3300009012|Ga0066710_103570226All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300009012|Ga0066710_103834102All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300009137|Ga0066709_101628216All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Tuwongella → Tuwongella immobilis922Open in IMG/M
3300009137|Ga0066709_103195492All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300009137|Ga0066709_103649996All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300009143|Ga0099792_10654610All Organisms → cellular organisms → Bacteria → Acidobacteria675Open in IMG/M
3300010303|Ga0134082_10069580All Organisms → cellular organisms → Bacteria1368Open in IMG/M
3300010322|Ga0134084_10025280All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1629Open in IMG/M
3300010325|Ga0134064_10022761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1788Open in IMG/M
3300010335|Ga0134063_10104003All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Tuwongella → Tuwongella immobilis1290Open in IMG/M
3300011269|Ga0137392_10306987Not Available1312Open in IMG/M
3300011269|Ga0137392_10311856Not Available1301Open in IMG/M
3300011269|Ga0137392_10408578All Organisms → cellular organisms → Bacteria1127Open in IMG/M
3300012096|Ga0137389_10049020All Organisms → cellular organisms → Bacteria → Acidobacteria3181Open in IMG/M
3300012096|Ga0137389_10538418Not Available1003Open in IMG/M
3300012096|Ga0137389_10583653All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300012189|Ga0137388_10875586All Organisms → cellular organisms → Bacteria → Acidobacteria831Open in IMG/M
3300012198|Ga0137364_11330638All Organisms → cellular organisms → Bacteria → Acidobacteria534Open in IMG/M
3300012202|Ga0137363_10431051All Organisms → cellular organisms → Bacteria1101Open in IMG/M
3300012205|Ga0137362_10956075All Organisms → cellular organisms → Bacteria → Acidobacteria730Open in IMG/M
3300012205|Ga0137362_11563865All Organisms → cellular organisms → Bacteria → Acidobacteria546Open in IMG/M
3300012206|Ga0137380_10232060All Organisms → cellular organisms → Bacteria1667Open in IMG/M
3300012209|Ga0137379_10755532All Organisms → cellular organisms → Bacteria877Open in IMG/M
3300012285|Ga0137370_10633251All Organisms → cellular organisms → Bacteria → Acidobacteria663Open in IMG/M
3300012285|Ga0137370_10662505All Organisms → cellular organisms → Bacteria → Acidobacteria648Open in IMG/M
3300012361|Ga0137360_10038190All Organisms → cellular organisms → Bacteria → Acidobacteria3380Open in IMG/M
3300012361|Ga0137360_11756004All Organisms → cellular organisms → Bacteria → Acidobacteria526Open in IMG/M
3300012685|Ga0137397_10023048All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia4392Open in IMG/M
3300012685|Ga0137397_10204252All Organisms → cellular organisms → Bacteria → Acidobacteria1470Open in IMG/M
3300012918|Ga0137396_10273112Not Available1248Open in IMG/M
3300012922|Ga0137394_10066496All Organisms → cellular organisms → Bacteria2997Open in IMG/M
3300012922|Ga0137394_10284760All Organisms → cellular organisms → Bacteria1413Open in IMG/M
3300012922|Ga0137394_11087153All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300012922|Ga0137394_11091902All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
3300012922|Ga0137394_11538700All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300012923|Ga0137359_10665234Not Available909Open in IMG/M
3300012925|Ga0137419_10174646All Organisms → cellular organisms → Bacteria1572Open in IMG/M
3300012925|Ga0137419_11267745All Organisms → cellular organisms → Bacteria → Acidobacteria619Open in IMG/M
3300012929|Ga0137404_10025914All Organisms → cellular organisms → Bacteria → Acidobacteria4289Open in IMG/M
3300012929|Ga0137404_12315881All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300012976|Ga0134076_10019032All Organisms → cellular organisms → Bacteria2422Open in IMG/M
3300012977|Ga0134087_10494735All Organisms → cellular organisms → Bacteria → Acidobacteria614Open in IMG/M
3300015052|Ga0137411_1288774All Organisms → cellular organisms → Bacteria2223Open in IMG/M
3300015054|Ga0137420_1172847All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M
3300015054|Ga0137420_1232466All Organisms → cellular organisms → Bacteria → Acidobacteria3879Open in IMG/M
3300015054|Ga0137420_1243673All Organisms → cellular organisms → Bacteria → Acidobacteria706Open in IMG/M
3300015054|Ga0137420_1275703All Organisms → cellular organisms → Bacteria → Acidobacteria723Open in IMG/M
3300015054|Ga0137420_1299456All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300015054|Ga0137420_1312370All Organisms → cellular organisms → Bacteria → Acidobacteria754Open in IMG/M
3300015054|Ga0137420_1403232All Organisms → cellular organisms → Bacteria1434Open in IMG/M
3300015358|Ga0134089_10073848All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Tuwongella → Tuwongella immobilis1276Open in IMG/M
3300021046|Ga0215015_10665929Not Available887Open in IMG/M
3300021171|Ga0210405_10182014All Organisms → cellular organisms → Bacteria1666Open in IMG/M
3300021559|Ga0210409_10350614All Organisms → cellular organisms → Bacteria1326Open in IMG/M
3300024330|Ga0137417_1132839All Organisms → cellular organisms → Bacteria2561Open in IMG/M
3300026323|Ga0209472_1022471All Organisms → cellular organisms → Bacteria2989Open in IMG/M
3300026328|Ga0209802_1095090All Organisms → cellular organisms → Bacteria1351Open in IMG/M
3300026334|Ga0209377_1061889All Organisms → cellular organisms → Bacteria1636Open in IMG/M
3300026361|Ga0257176_1005522All Organisms → cellular organisms → Bacteria1479Open in IMG/M
3300026499|Ga0257181_1054791All Organisms → cellular organisms → Bacteria → Acidobacteria667Open in IMG/M
3300026529|Ga0209806_1134599Not Available972Open in IMG/M
3300026548|Ga0209161_10466197All Organisms → cellular organisms → Bacteria → Acidobacteria556Open in IMG/M
3300026557|Ga0179587_10754531All Organisms → cellular organisms → Bacteria → Acidobacteria641Open in IMG/M
3300027512|Ga0209179_1072468All Organisms → cellular organisms → Bacteria → Acidobacteria755Open in IMG/M
3300027643|Ga0209076_1038608All Organisms → cellular organisms → Bacteria1342Open in IMG/M
3300027643|Ga0209076_1164467All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300027655|Ga0209388_1128517All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300027671|Ga0209588_1106089All Organisms → cellular organisms → Bacteria → Acidobacteria903Open in IMG/M
3300027727|Ga0209328_10051315Not Available1267Open in IMG/M
3300027787|Ga0209074_10497885Not Available528Open in IMG/M
3300027846|Ga0209180_10457119All Organisms → cellular organisms → Bacteria → Acidobacteria719Open in IMG/M
3300027862|Ga0209701_10546282All Organisms → cellular organisms → Bacteria → Acidobacteria623Open in IMG/M
3300027875|Ga0209283_10040703All Organisms → cellular organisms → Bacteria → Acidobacteria2929Open in IMG/M
3300027875|Ga0209283_10176199All Organisms → cellular organisms → Bacteria1420Open in IMG/M
3300027875|Ga0209283_10250243Not Available1175Open in IMG/M
3300027882|Ga0209590_10650533All Organisms → cellular organisms → Bacteria → Acidobacteria676Open in IMG/M
3300027903|Ga0209488_10652798All Organisms → cellular organisms → Bacteria → Acidobacteria758Open in IMG/M
3300028536|Ga0137415_10164174All Organisms → cellular organisms → Bacteria2053Open in IMG/M
3300028792|Ga0307504_10424452All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
3300031962|Ga0307479_10489013All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Tuwongella → Tuwongella immobilis1214Open in IMG/M
3300031962|Ga0307479_12025275All Organisms → cellular organisms → Bacteria → Acidobacteria524Open in IMG/M
3300032180|Ga0307471_100603079All Organisms → cellular organisms → Bacteria1257Open in IMG/M
3300032180|Ga0307471_101326389Not Available881Open in IMG/M
3300032180|Ga0307471_103175347All Organisms → cellular organisms → Bacteria → Acidobacteria583Open in IMG/M
3300032205|Ga0307472_101504308All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil57.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil13.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027512Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25389J43894_109266013300002916Grasslands SoilMKSRIRFASIFLALVLVLPALVQAAGTVPEGTKITVVTDQSVSSK
Ga0066673_1033438213300005175SoilMKSRIRFASIFLALVLPALAQASGTVPEGTKITVVTDQPVSSKT
Ga0066679_1012292813300005176SoilMNTRIRLVSIFLAVALLWPAPAQAGGTVPEGTKISVVIDQAVSSKTAKMGQTVTGTVLQDVASGGKV
Ga0066690_1004124643300005177SoilMKSRIRFASIFLALVLVLPALVQAAGTVPEGTKITVVTDQSVSSKTAK
Ga0066690_1013842013300005177SoilMKSRIRFASIFLALVLPALAQASGTVPEGTKITVVTDQPVSSKTAKAGQSVTGSVAHDVISG
Ga0066682_1070348723300005450SoilMKSRIRLASIFLALALVLPALVQAGGTVPEGTKITVVTDQSVGSKTAKAGQTVSGSVA
Ga0066681_1025396613300005451SoilMNSRVRLVSIFLALALLVPALAEAGGTVPAGAKISVVTDQSVSSKTAKAGQTVTG
Ga0066700_1029310623300005559SoilMKSRIRFASIFLALVLPALAQAGGTVPEGTKITVVTDQSVSSK
Ga0066705_1062030413300005569SoilMKSRIRFASIFLALVLPALAQASGTVPEGTKITVVTDQ
Ga0070716_10075419423300006173Corn, Switchgrass And Miscanthus RhizosphereMNSRIRRVAAFLALALAIPALALAGGTVPQGAKITGVTEQSVSSKTAK
Ga0066653_1046629713300006791SoilMKSQIRFASIFLALALVLPALAQASGTVLEGTKITVVTDQSVSSKTAKAGQSVTGSLAHD
Ga0066665_1004084013300006796SoilMNQRIRLVSIFLAPALLLPALAQAGDTVPEGAKISVVIDQAVSSKTAKIGQTVTGTVS
Ga0099791_1008906133300007255Vadose Zone SoilMRARMRFASIFVALALLLPALALASGTVPAGVRITVVTDQSVSSKTAKIGQTV
Ga0099791_1012455733300007255Vadose Zone SoilMNPRIRTIAISLALALALPALTQASGTIPAGTKIPVVTDQ
Ga0099793_1016850313300007258Vadose Zone SoilMNPRIRTIAISLALALALPALAQASGTVPEGTKISVVTDQAVSSKMAKVGQTVSGTVAHDVTAGGKLVIPKGSAAKL
Ga0099794_1035156213300007265Vadose Zone SoilMNPRIRTIAISLALALALPALAQASGTIPAGTKIPAVIDQSVSSKTAKVGQT
Ga0066710_10357022613300009012Grasslands SoilMKSQIRFASIFLALAFVLPALVQAAGTVPEGTKITVVTDQSVSSKSAKAGQSVTGSVAHDVISGGK
Ga0066710_10383410223300009012Grasslands SoilMNSRIRLVSIFLALALLVPALAQAGGTIPAGVKISVLTDQSVSSKTAKAGQTVTGSVA
Ga0066709_10162821613300009137Grasslands SoilMNPRIRSSAIFLALALAIPALAQAGGTVPLGAKITVVTDQSVSSKTAKAGET
Ga0066709_10319549223300009137Grasslands SoilRFASIFLALVLVLPALVQAAGTVPEGTKITVVTDQSVSSKTAKAGQKVTGSVAHDVISGAKW*
Ga0066709_10364999623300009137Grasslands SoilMKSQIRFASIFLALAFVLPALVQAAGTVPEGTKITVVTDQSVSSKSAKAGQSVTGSVAHDVISGG
Ga0099792_1065461013300009143Vadose Zone SoilMNSRIRLVSIFLALALLVPVLAQASGTVPAGAKISVVTDQAVSSKTAKIGQTITGTVSQDVTSGGKV
Ga0134082_1006958013300010303Grasslands SoilMKSRIRFASIFLALVLVLPALVQAAGTVPEGTKITVVTDQSVSSKTAKAGQTVTGSVAHDVI
Ga0134084_1002528013300010322Grasslands SoilMKSRIRFASIFLALVLPVLAQASGTVPEGTKITVVTDQPVSSKTAKAGQS
Ga0134064_1002276113300010325Grasslands SoilMKSRIRFASIFLALVLPALAQASGTVPEGTKITVVTDQPVSSKTAKAGQSVTGSVAH
Ga0134063_1010400313300010335Grasslands SoilMNTRIRLVSIFLAVALLWPALAQAGGTVPEGTKISVVIDQAVSSKTAKMGQTVTGTVLQDVA
Ga0137392_1030698733300011269Vadose Zone SoilMKSRIRLASIFLALALVLPAMAQAGGTVPEGTKITVVTDQSVSSKTAKAGQPVSGSVAHD
Ga0137392_1031185633300011269Vadose Zone SoilMKSRIRLASIFLALALVLPALAQAGGTVPEGTKITVVTDQSVSSKTAKAGQPVSGSVAHD
Ga0137392_1040857813300011269Vadose Zone SoilMNPRIRSIAIFLALAIAIPALAQAGGTVPQGAKITVVTDQSVSSKTAKIGE
Ga0137389_1004902013300012096Vadose Zone SoilMNPRIRTIAILLALALALPALAQASGTIPAGTKIPVVTDQSVSSKTAQAGQTISGT
Ga0137389_1053841813300012096Vadose Zone SoilMNRRIRTIGAFLALALVVPALAQASGTVPQGAKITVVTDQSVSSKTAKIGQTVSASVAQDVT
Ga0137389_1058365313300012096Vadose Zone SoilMNSRVRLFSIFVALVLLVPALAQASGKVPEGTKITVVTDQSVSSKTAKIGQTVTGSVAQE
Ga0137388_1087558623300012189Vadose Zone SoilMNPRIRTIAVLVVLALAIPALAQAEGTVPQGAKITVVTDQSVSSKTAKIGQTVT
Ga0137364_1133063813300012198Vadose Zone SoilMKFQIQHASIFLALVLVLPGLAQASGTVPEGTKITVVTDQPVSSKTAKAGQSVTG
Ga0137363_1043105123300012202Vadose Zone SoilMNPRIRTIAIFLALALALPALAQASGTIPAGTKIPVVTDQAVSSKTAKVGQTVSG
Ga0137362_1095607523300012205Vadose Zone SoilMKSQIRLASIFFALALVLPALAQAGGTIPVGTKITVVSDQSVSSKTARIGETVTGSIAHDVISEGKVMIPKG
Ga0137362_1156386523300012205Vadose Zone SoilMNPRIRTVAILLSLALALPALTQASGTIPAGTKIPVVTDQSVSSKTA
Ga0137380_1023206013300012206Vadose Zone SoilMNPRIRSSAIFLALALAIPALAQAGGTVPLGTKITVVTDQSVSSKTAKAGETVTGSVAQDVTS
Ga0137379_1075553213300012209Vadose Zone SoilMNPRIRSSAVFLALALAIPALAQAGGTVPQGAKITVVTDQSVSSKRAKIGQT
Ga0137370_1063325123300012285Vadose Zone SoilMNTRIRLVSIFLALVLLLPALAQAGGTVREGTKISVVIDQAVSSKTAKMGQTVTGTV
Ga0137370_1066250513300012285Vadose Zone SoilMKSQIRFASIFLALVLALPALVQAAGTVPEGTKITVVTDQSVSPKSAKAGQSVTGAVAHDVISGGKVVIAQ
Ga0137360_1003819013300012361Vadose Zone SoilMNPGIRNSAVFLALALAIPALAQAGGTVPQGAKITVVTEQSVSSKTAKIGETVSG
Ga0137360_1175600413300012361Vadose Zone SoilMNPRIRTIATFLALALALPALTQASGTIPAGTKIPVVTDQSVSSKTAQV
Ga0137397_1002304863300012685Vadose Zone SoilMNPRIRTIAIFLALALALPALTQASGTIPAGTKIPVVIDQSVSSKTAKAG
Ga0137397_1020425213300012685Vadose Zone SoilMNPRIRTIAISLALALALPALAQASGTIPAGTKIPVVTDQSVSSKTA
Ga0137396_1027311213300012918Vadose Zone SoilMRFVSILVAVALLWPALAQASGTVPAGVKISVVTDQSVSSKTAKIGQTVTGSV
Ga0137394_1006649613300012922Vadose Zone SoilMAIFLAMALALPALAQASGTVPAGAKISVVTDQSVSSKTAKVGQTVSGTVAQDV
Ga0137394_1028476033300012922Vadose Zone SoilMNPRIRTIAISLALALALPALTQASGTIPAGTKIPVVTDQSVSSKT
Ga0137394_1108715313300012922Vadose Zone SoilMNPRIRTFAISLALALALPALTQASGTIPAGTKIPVVTDQSVSSKTAQ
Ga0137394_1109190213300012922Vadose Zone SoilMNPRIRTIAIFLALALALPALAQASGTVPAGAKISVVTDQSVSSKTAKVGQT
Ga0137394_1153870013300012922Vadose Zone SoilMNPRIRTIAIFLVLALALPALTQASGTIPAGTKIPVVIDQSVSSKTAKAGETV
Ga0137359_1066523423300012923Vadose Zone SoilMAIFLAMALALPALAQASGTVPAGAKISVVTDQSVSSKTA
Ga0137419_1017464613300012925Vadose Zone SoilMQFVSIFVAVALLWPALAMAESTVPAGVRITVVTDQSVSSKTAKIGQTVTGSV
Ga0137419_1126774513300012925Vadose Zone SoilMNARIRSVAIFLALALALPALAQASGTVPAGAKISVVTDQAVSSKMAKVGQTVSGTVAQD
Ga0137404_1002591463300012929Vadose Zone SoilMNPRIRTIATFLALALALPALTQASGTIPAGTKIPVVIDQSVSSKTAKAGQTVTGTVAQ
Ga0137404_1231588123300012929Vadose Zone SoilMNPRIRTIAISLALALALSALTQASGTIPAGTKIPVVTDQSVSSKTAQVG
Ga0134076_1001903213300012976Grasslands SoilMKSRIRFASIFLALVLPALAQASGTVPEGTKITVVTDQPVSSKTAKAGQSVTGSVAHD
Ga0134087_1049473513300012977Grasslands SoilMKSQIRFASIFLALAFVLPALVQAAGTVPEGTKITVVTDQSVSSKTAKAGQKVTGSVAHDVISGGK
Ga0137411_128877443300015052Vadose Zone SoilMNPRIRTIATFLALALALPALTQASGTIPAGTKIPVAIDQSVSSKTAKAGQT
Ga0137420_117284723300015054Vadose Zone SoilMNARIRSVAIFLALALAPPALAQASGTVPAGAKISVVTDQAVSSKMAKVGQTVSGTVAQD
Ga0137420_123246653300015054Vadose Zone SoilMNSRIRSIAVFLVLALAIPALALAGGTVPQGAKITVVTDQSVSSKTAKIGETVSASV
Ga0137420_124367313300015054Vadose Zone SoilMNARIRSVAIFLALALAPPALAQASGTVPAGAKISVVTDQAVSCSKMAKVGQTVSGTVAQ
Ga0137420_127570323300015054Vadose Zone SoilMRARMRFVSIFVALALLLPALALASGTVPVGVRITVVTDQSVSSKTAKIGQTVTG
Ga0137420_129945623300015054Vadose Zone SoilMRARMRFVSIFVALALLLPALALASGTVPVGVRITVVTDQSVSSKTAKIGQTVTGSVGQDVTS
Ga0137420_131237013300015054Vadose Zone SoilMRARMRFVSIFVALALLLPALALASGTVPVGVRITVVTDQSVSSKTAKIGQTGR*
Ga0137420_140323213300015054Vadose Zone SoilMNSLIRSIAVFLVLALAIPALALAGGTVPQGAKITVVTDQSVSSKTAKIGETVSASVAQDVTSDGKVVIP
Ga0134089_1007384813300015358Grasslands SoilMKSQIRFASIFLALAFVLPALVQAAGTVPEGTKITVVTDQSVSSKSAKAGQSVTGSVAHDVISGGKVVIPKG
Ga0215015_1066592923300021046SoilMKSRIRFVSILLALAMIWPSLSQARGTVPEGTKISVVTDQSVSSKTAKIGETVTGSVAHDVISEGKVVIP
Ga0210405_1018201413300021171SoilMKSQIRLVSIFLALALLLPALAKAEGTIPAGVKITVVTDQSVSSKTAKAGETVTG
Ga0210409_1035061413300021559SoilMKSQIRLVSIFLALALLLPALAKAEGTIPAGVKITVVTDQSVSSKT
Ga0137417_113283913300024330Vadose Zone SoilMRARMRFVSIFVALALLLPALALASGTVPVGVRITVVTDQSVSSKTAKIGQTVTGS
Ga0209472_102247123300026323SoilMNSRVRLVSIFLALALLVPALAEAGGTVPAGAKISVVTDQSVSSKTAKAGQTVTGWSRKM
Ga0209802_109509033300026328SoilMNPRIRSSAIFLALALAIPALAQAGGTVPLGTKITVVTDQSVSSKTAKAGETV
Ga0209377_106188913300026334SoilMKSRIRLASIFLALALVLPALVQAGGTVPEGTKITVVTDQSVSSKTAKAGQTVSGSVA
Ga0257176_100552213300026361SoilMNSRIRLVSIFLVLALLLPAVAQAGGTIPAGVKISVVTDQSVSSKTAKA
Ga0257181_105479113300026499SoilMNPRIRTIAILLALALALSALAQASGTIPAGTKIPVVTDQSVSSK
Ga0209806_113459913300026529SoilMKSQIRFASIFLALALVLPALAQASCTVLEGTKITVVTDQSVSS
Ga0209161_1046619713300026548SoilMNTRIRLVSIFLALVLLLPALAQAGGTVREGTKISVVIDQAVSSKTAKMGQTITGTVSQDVASGGKVV
Ga0179587_1075453113300026557Vadose Zone SoilMNTRIRLVSVFLALALLEPALAQAGGTIPEGTKISVVIDQAVSSKTVKMGQTVTGTVSQDVASGGKVVIPR
Ga0209179_107246813300027512Vadose Zone SoilMKSRIRFASIFLAVALLLPALAQAGGTVPQGTKITVVTDQSVSSKTAKIGQTVSGSVSQDVTSD
Ga0209076_103860833300027643Vadose Zone SoilMNPRIRTFAISLALALALPALTQASGTIPAGTKIPVVTDQFVSSKTAQVGQTISGTVAQD
Ga0209076_116446723300027643Vadose Zone SoilMNPRIRTIAISLALALALPALAQASGTVPEGTKISVVTDQAVSSK
Ga0209388_112851713300027655Vadose Zone SoilMRARMRFASIFVALALLLPALALASGTVPAGVRITVVTDQ
Ga0209588_110608923300027671Vadose Zone SoilMRSQIRFVSIFLAIALLLPALAQAGGTIPEGTKITVVTDQSVSSKTAKAG
Ga0209328_1005131513300027727Forest SoilMNSRIRLVSIFLTLAVLLPALAQAGGTIPAGAKISVVTDQSVSSKAAKAGQTVTGSVAHDVTADGKVVIP
Ga0209074_1049788523300027787Agricultural SoilMISRIRSTAILLFVALLLPVLLRAGGTIPAGTSISVVTDQAVSSKDAKIGQTITG
Ga0209180_1045711923300027846Vadose Zone SoilMKSRMQFVSVFLALALLLPALVQAESTVPQGTKITVVTDQSVSSKTARIGETVTGSVAQDVTS
Ga0209701_1054628223300027862Vadose Zone SoilMNPRIRSVAVFLALALAIPALALAGGTVPQGAKITVVTDQSVSSKTAKIGETVS
Ga0209283_1004070313300027875Vadose Zone SoilMNPRIRTIAILLALALALPALAQASGTIPAGTKIPVVTNQ
Ga0209283_1017619933300027875Vadose Zone SoilMNLRIRAVSIFLALALGVPVLAQAEGSVPQGTKITVVTDQSVSSKTAKIGQTVSGSVAQDVTAE
Ga0209283_1025024313300027875Vadose Zone SoilMKSRIRLASIFLALALVLPALAQAGGTVPEGTKITVVTDQSVSSKTAK
Ga0209590_1065053323300027882Vadose Zone SoilMNSRIRLVSTFVAIALLLPALAQASGTVPAGAKISVVTDQSVSSKTAKAGQTVTGSVAHD
Ga0209488_1065279813300027903Vadose Zone SoilMNPRIRSVAVFLALALAIPALALAGGAVPQGAKITVVTDQSVSSKTAKIGETV
Ga0137415_1016417443300028536Vadose Zone SoilMNSRIRLASIFLALAMLLPALAKAEGTVPVGAKITVVTNQSVSSKTAKIGQTITGSVAQDVTAGG
Ga0307504_1042445213300028792SoilMNPRIRTIAIFLALVLALPAFAQASGTIPAGTKIPVVTDQFVSSKTAQ
Ga0307479_1048901333300031962Hardwood Forest SoilMKSQIRLASIFFALALVLPALAQAGGTIPVGTKITVVTDQSVSSK
Ga0307479_1202527523300031962Hardwood Forest SoilMKSQIRLVSIFLALALLWPALAQASGTIPAGVKITVVTDQSVSSKTARIGETVTGSVAHD
Ga0307471_10060307933300032180Hardwood Forest SoilMNPRIRTIAISLALALALPALAQASSTIPAGTKIPVVTDQSVSSKTAQVGQTISGT
Ga0307471_10132638923300032180Hardwood Forest SoilMNPRIRTMAIFLAMALALPALAQASGTVPAGAKISVVTDQSVSSKTAKVGQTVSGT
Ga0307471_10317534723300032180Hardwood Forest SoilMHSRIRTIAILLALALALPALAQASSTVPEGTKISVVTDQSVSSKTAKVGQ
Ga0307472_10150430823300032205Hardwood Forest SoilMHSRIRTIAILLALALALPALAQASSTVPEGTKISVVTDQSVSSKTAKVGQTVSGTIAQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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