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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103721 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MTRGEVLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHTVSQ |
| Number of Associated Samples | 84 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 50.00 % |
| % of genes near scaffold ends (potentially truncated) | 2.97 % |
| % of genes from short scaffolds (< 2000 bps) | 2.97 % |
| Associated GOLD sequencing projects | 79 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.43 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.040 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.792 % of family members) |
| Environment Ontology (ENVO) | Unclassified (21.782 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.386 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF02586 | SRAP | 19.80 |
| PF13467 | RHH_4 | 2.97 |
| PF00239 | Resolvase | 2.97 |
| PF03060 | NMO | 0.99 |
| PF00486 | Trans_reg_C | 0.99 |
| PF13340 | DUF4096 | 0.99 |
| PF07690 | MFS_1 | 0.99 |
| PF01068 | DNA_ligase_A_M | 0.99 |
| PF03734 | YkuD | 0.99 |
| PF02735 | Ku | 0.99 |
| PF12680 | SnoaL_2 | 0.99 |
| PF00732 | GMC_oxred_N | 0.99 |
| PF13744 | HTH_37 | 0.99 |
| PF12161 | HsdM_N | 0.99 |
| PF13683 | rve_3 | 0.99 |
| PF09361 | Phasin_2 | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG2135 | ssDNA abasic site-binding protein YedK/HMCES, SRAP family | Replication, recombination and repair [L] | 19.80 |
| COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 2.97 |
| COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 2.97 |
| COG0516 | IMP dehydrogenase/GMP reductase | Nucleotide transport and metabolism [F] | 0.99 |
| COG1273 | Non-homologous end joining protein Ku, dsDNA break repair | Replication, recombination and repair [L] | 0.99 |
| COG1376 | Lipoprotein-anchoring transpeptidase ErfK/SrfK | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
| COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.99 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.99 |
| COG2070 | NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family | General function prediction only [R] | 0.99 |
| COG2303 | Choline dehydrogenase or related flavoprotein | Lipid transport and metabolism [I] | 0.99 |
| COG3034 | Murein L,D-transpeptidase YafK | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.04 % |
| All Organisms | root | All Organisms | 3.96 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300021401|Ga0210393_10561546 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 932 | Open in IMG/M |
| 3300027898|Ga0209067_10084035 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1643 | Open in IMG/M |
| 3300028906|Ga0308309_10520078 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1030 | Open in IMG/M |
| 3300032160|Ga0311301_10047416 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 9995 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 20.79% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 6.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.93% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 5.94% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 5.94% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 3.96% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 3.96% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.96% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 3.96% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.96% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.96% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.97% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.97% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.98% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 1.98% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.98% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.99% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.99% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.99% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.99% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.99% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.99% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459023 | Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition) | Environmental | Open in IMG/M |
| 2189573005 | Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen) | Environmental | Open in IMG/M |
| 3300001546 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006086 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 | Environmental | Open in IMG/M |
| 3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009522 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG | Environmental | Open in IMG/M |
| 3300009524 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG | Environmental | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300009632 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 | Environmental | Open in IMG/M |
| 3300009643 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 | Environmental | Open in IMG/M |
| 3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
| 3300009683 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017936 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1 | Environmental | Open in IMG/M |
| 3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300017994 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2 | Environmental | Open in IMG/M |
| 3300017995 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 | Environmental | Open in IMG/M |
| 3300018003 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40 | Environmental | Open in IMG/M |
| 3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
| 3300018014 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40 | Environmental | Open in IMG/M |
| 3300018038 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10 | Environmental | Open in IMG/M |
| 3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300022511 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300024227 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 | Host-Associated | Open in IMG/M |
| 3300025320 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027676 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027857 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027894 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FA3_04276240 | 2170459023 | Grass Soil | MFYSLHDQGGILRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHTVAQLKERGDPWR |
| FG3_09782000 | 2189573005 | Grass Soil | MTKGXVLRYAIAFALRRSRKIIRGLKQGLTEEERYAVADHAVAQLK |
| JGI12659J15293_100696461 | 3300001546 | Forest Soil | VLRYAIAFALMRARKIVRGAKAGLTEQERYAIADH |
| JGIcombinedJ51221_101026221 | 3300003505 | Forest Soil | MTKGXVLRYAIAFALRRSRKIIRGLKQXLTEEERYAVADHAVAQLKECGDLGG* |
| Ga0062384_1011214272 | 3300004082 | Bog Forest Soil | MTRGDLLRYRIAFALSRAAKIVRGLRQALTEAERYAVADHVV |
| Ga0062386_1015336191 | 3300004152 | Bog Forest Soil | VTRGDVLKYKIAFALRRASKIVRGLRQGLTEPERYAVADHVVD |
| Ga0066388_1085459102 | 3300005332 | Tropical Forest Soil | MTRGEVLRYAIAFALRRSRKIIRGLKEGLTEAERYAVADHAVAPRSQQRA* |
| Ga0070695_1016379141 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MTRGDVLRYAIAFALRRARKIIRGLKDGLTEEERYAVADHVVAQLRE |
| Ga0066903_1005544954 | 3300005764 | Tropical Forest Soil | MTKGEVLRYAIAFALRRSRKIICGLKEGLTEEERFAVADHTVEQERAWGSLAVK* |
| Ga0066903_1019648123 | 3300005764 | Tropical Forest Soil | MTRGEVLRYAIAFALRRAKKIIRGLKESLTEEERF |
| Ga0066903_1039305312 | 3300005764 | Tropical Forest Soil | MFYSSMTRGEVLRYAIAFALRRARKIIRGLKDGLTEEERYAVADHVVAHAE* |
| Ga0075017_1003794932 | 3300006059 | Watersheds | MTRGEVLRYAIAFALRRARKIIRGLKDGLTEEERYAVADHVV |
| Ga0075019_105533122 | 3300006086 | Watersheds | MTRGEVLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADH |
| Ga0075014_1000192347 | 3300006174 | Watersheds | MVCSHPMTRGDILRYRIAFALSRASKIIRGLKQGLTEAERYAVADHVVAQLKE |
| Ga0075014_1006593202 | 3300006174 | Watersheds | MTKGEILRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHTVAQLKERGDLWRPKP* |
| Ga0070765_1015958981 | 3300006176 | Soil | MTRGDVLRDSIAFALRRARKIIRGLKEGLSESERYAVA |
| Ga0073928_105983272 | 3300006893 | Iron-Sulfur Acid Spring | MTRGEVLRYAIAFALRRARKIIRGLKDGLTEEERYAVADHVVAQLKDRGGP |
| Ga0105242_112252882 | 3300009176 | Miscanthus Rhizosphere | MTRAVVLRYAIAFALWRARKIIRGLKDGLTEEERYSVAD |
| Ga0116218_10936354 | 3300009522 | Peatlands Soil | MFLWGMTKGEVLRYAIAFALRRSRKIVRGLKEGLTEDERYAVADHAVAQLK |
| Ga0116218_10964453 | 3300009522 | Peatlands Soil | MTKGEILRYAIAFALRRSRKIIRGLKEGLSEDEGMPSQI |
| Ga0116225_12611681 | 3300009524 | Peatlands Soil | MTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERY |
| Ga0105249_122771491 | 3300009553 | Switchgrass Rhizosphere | MFYYVMTRGDVLRYAIAFALRRARKIIRGLKDGLTEEERYAVADHVVAQLRERG |
| Ga0116102_10706673 | 3300009632 | Peatland | MFSFCSHGEMTRGDVLQYRLAFALSRAVKIVRGLRQGLTEAERY |
| Ga0116110_10456421 | 3300009643 | Peatland | MFSYHMTRGDVLRYRLAFALSRAAKIVRGLRQGLTEDERYAVADHVV |
| Ga0116110_11441072 | 3300009643 | Peatland | MTRGDMLRYRLAFALSRAAKIVRGLRQGLTEAERYAVARSPTS |
| Ga0116110_11686202 | 3300009643 | Peatland | MGSMTRGDVLRYSIAFALRRAAKIVRGLRQGLSEDERYAV |
| Ga0116215_14674742 | 3300009672 | Peatlands Soil | MFLWGMTKGEVLRYAIAFALRRSRKIVRGLKEGLTEDERYAVADHAV |
| Ga0116224_100919782 | 3300009683 | Peatlands Soil | MTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHAVARLKERGETLGD* |
| Ga0074044_106976272 | 3300010343 | Bog Forest Soil | MFTICSHKSMTRGDVLRYRIAFALSRAVKIVRGLRQGLTEAERYAVADHVVGQ |
| Ga0134128_109545061 | 3300010373 | Terrestrial Soil | MTRGDVLRYAIAYALIRARKVVRGLQQGLSEDERHAVAEHVVTQLTQGGDPW |
| Ga0126381_1037125802 | 3300010376 | Tropical Forest Soil | MFLWRMTKGEVLRYAIAFPLRRSGKIVRGLKEGLTEDERYVV |
| Ga0134126_106390531 | 3300010396 | Terrestrial Soil | VAVTIVLFMFYWAMTKGEVLRYAIAFALRRSRKIIRGLKEGMTEEER |
| Ga0134122_134075561 | 3300010400 | Terrestrial Soil | VAVTIVLFMFYWAMTKGEVLRYAIAFALRRSRKIIRGLKEGMTEGERFAVADHTVSQLK |
| Ga0105246_102279593 | 3300011119 | Miscanthus Rhizosphere | MTRGDVLRYAIAYALMRARKIVRGLKNGLTEEKGYAVADHVVEQ |
| Ga0164299_101456881 | 3300012958 | Soil | MFFWGMTKGEVLRYAIAFALRCSRKIIRCLKEGLTEEERFAVADQTVAQLKLRGAP |
| Ga0164301_111999191 | 3300012960 | Soil | MIRGEVLRYAIAFALRRSSKIIRGLKLGLTEEERYAGGRSHRRA |
| Ga0164305_101327431 | 3300012989 | Soil | MIRGEVLRYAIAFALRRSRKIIRGLKLGLTEEERYAG |
| Ga0164305_103036991 | 3300012989 | Soil | MVLYMFLLRMTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERFAVADHT |
| Ga0181526_110608571 | 3300014200 | Bog | MTRGDVLRYRIAFALMRARKIIRGLKEGLTESERYAVADHVVAQLKAR |
| Ga0157379_109581142 | 3300014968 | Switchgrass Rhizosphere | MLRYAIAYALIRARKIVRGLKYGLTEEERFAVADAAV |
| Ga0132256_1016147101 | 3300015372 | Arabidopsis Rhizosphere | LFYHDKGEVLRYAIAFALRPPARSGLKEGLTEEERYAVADHAVAQLKDHGDPW |
| Ga0182041_118878961 | 3300016294 | Soil | MTRGEMLRYALAYALRRSRKIVRGLEQDLSEEERYAVADHVVAQL |
| Ga0182038_118802011 | 3300016445 | Soil | LSSKTMTKGEVLRYAIAFALRRSRGLKQGLTEEERYPVADRAIAQLKERGDPGC |
| Ga0187821_103645471 | 3300017936 | Freshwater Sediment | MTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERCAVADHAVAQLKERGDPW |
| Ga0187780_106171282 | 3300017973 | Tropical Peatland | MTKGEILRYAIAFALRRSRKIVRGLKEGLTEDERFAVADCTVAQLKER |
| Ga0187782_101641261 | 3300017975 | Tropical Peatland | MTRGEVLRYKLAYALGRAVKIVRGLRQGLTEDERYAVADHVVSQLK |
| Ga0187822_100672441 | 3300017994 | Freshwater Sediment | MTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHTVAQLKERGDPW |
| Ga0187816_104751381 | 3300017995 | Freshwater Sediment | MTKGEVLKYAIAFALRRSRKIIRGLKEGLTEAERYAVADHAVAQLKERGVPGPCRKLPG |
| Ga0187876_12401322 | 3300018003 | Peatland | MTRGDVLRYRLAFALIRAGKIVRGLRQGLTEDERYAVAD |
| Ga0187804_103559531 | 3300018006 | Freshwater Sediment | MTRGDVLRYAIAYALMRARRIVRGLKEGLTEDERYAVADHVVAQLKERGDP |
| Ga0187860_13353972 | 3300018014 | Peatland | MTRGDILRYSLAFALRRASKVVRGLRQGLSEDERYAVADHVVGQL |
| Ga0187855_104288981 | 3300018038 | Peatland | MTRGDVLRYAIAFALRRARKIVRGLKEGLTEAEGFAVVGHVVSQLQDGGDPWG |
| Ga0187871_107376821 | 3300018042 | Peatland | MTKGDILRYATAFALIPARKVVRGLKQELTDEDRFAVADHVVSQLKAHGDPWH |
| Ga0187770_103653011 | 3300018090 | Tropical Peatland | MTRGDVLRYAIAFALMRARKIVRGLKQTLTEDERHAVAD |
| Ga0210407_108698512 | 3300020579 | Soil | MTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERFAVADHTV |
| Ga0210403_101589051 | 3300020580 | Soil | MTKGDILRYAIAFALRRSHKIIRGLKEGLTEEERFAVADHAVAQLKDRGDP |
| Ga0210406_100496413 | 3300021168 | Soil | MTKGEVLKYAVAFALRRSRKIIRGLKQGLTEEERYAVADHAVAQLKERGDP |
| Ga0210405_101957143 | 3300021171 | Soil | LFPLCSIERMTKGEVLRYAIAFALRRSRKIIRGLKQGLTEEERYAVADHAVAQLK |
| Ga0210408_110939531 | 3300021178 | Soil | VLRYAIAFALRRSRKIIRGLKQGLTEEERYAVADHA |
| Ga0210396_112398282 | 3300021180 | Soil | MTKGEVLRYAIAFALRCSRKIIRGLKEGLTEEERFAVADQTVAQ |
| Ga0210393_105615461 | 3300021401 | Soil | MTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERFAVADHTVAQLKQRGDPWRL |
| Ga0210397_111156021 | 3300021403 | Soil | MFFWGMTKGEVLRYAIAFALRCSRKIIRGLKEGLTEEERFAVADQ |
| Ga0210383_110998452 | 3300021407 | Soil | VLRYAIAFALRRSRKIVRGLKEGLTEDERYAVADHAVAQLKERG |
| Ga0210394_110788332 | 3300021420 | Soil | MTKGEVLRYAIAFALRRSRKIIRGLKQGLTEEERYEVA |
| Ga0210394_112744871 | 3300021420 | Soil | MTRGDVLRYNLAYALIRACKCVRGLRQALTERERYAVADHVVAQLK |
| Ga0210384_106195461 | 3300021432 | Soil | MTKGEVLRYAIAFALRCSRKIIRGLKEGLTEEERFAVADQ |
| Ga0210390_108860963 | 3300021474 | Soil | MTKGDILRYAIAFALRRSRKIIRGLKEGLTEEERFAVADRAVAQL |
| Ga0210390_115524611 | 3300021474 | Soil | MFFWGMTKGEVLRYAIAFALRCSRKIIRGLKEGLTEEERFAVADQTV |
| Ga0210410_105323851 | 3300021479 | Soil | MVLYMFLLRMTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEER |
| Ga0210410_106035972 | 3300021479 | Soil | MFFWGMTKGEVLRYAIAFALRCSRKIIRGLKEGLTEEERFAVADQTVAQPNSVAT |
| Ga0210410_117643542 | 3300021479 | Soil | MFYWAMTKGEVLRYAIAFALRRSRKIIRGLKEGMTEEERFAVADHTVSQ |
| Ga0242651_10323302 | 3300022511 | Soil | EVLRYAFALRRSRKIVRGLKEGLSEDERFAVADTLSTS |
| Ga0212123_106942951 | 3300022557 | Iron-Sulfur Acid Spring | MTRGDVLQYAIAFALRRARKNVRGLREALTEDERYAVADHVVTQA |
| Ga0212123_107789291 | 3300022557 | Iron-Sulfur Acid Spring | MTRGEVLKYRIAYALMRARKIVRGLKEGLTEDERYAVADHVVRQLKE |
| Ga0228598_10920941 | 3300024227 | Rhizosphere | MTKGDVLRYAIAFALRRSRKIVRGLKQGLTEEERYAVADHAV |
| Ga0209171_105500611 | 3300025320 | Iron-Sulfur Acid Spring | MTKGEVLRYAIAFALRRSRKIIRGLKEGLNEDERGDAVER |
| Ga0207663_109741032 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MTRGEVLRYAIAFALRRSRKIIRGLKAGLTEEERYAVAD |
| Ga0207702_115285702 | 3300026078 | Corn Rhizosphere | MTRAVVLRYAIAFALWRARKIIRGLKDGLTEEERYSVADHVVAQLKDR |
| Ga0209333_10890491 | 3300027676 | Forest Soil | MTKGDILRYATAFALIPARKVVRGLKQELTDEDRFAVADHVVSQLKAHGDPWHL |
| Ga0209166_105772711 | 3300027857 | Surface Soil | MFSSDMTRGDVLRYRLAFALSRASKIVRGLRQGLSEVERYA |
| Ga0209169_107380431 | 3300027879 | Soil | MTRGDVLRDSIAFALRRARKIIRGLKEGLTEDERYAVAEHVVSQLKRAATLGVWARKRRLAAATQ |
| Ga0209068_105157451 | 3300027894 | Watersheds | MQDIAACAFVLYMFSWVMTRGEVLRYAIAYALRRSRKIIRGLKEGLTEEERYA |
| Ga0209067_100840355 | 3300027898 | Watersheds | MTRGEVLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHTVSQ |
| Ga0209067_105550811 | 3300027898 | Watersheds | MTKGEVLRYAIAFALRRSRKIIRGLKQELTEEERYA |
| Ga0209006_112142092 | 3300027908 | Forest Soil | MFFWGMTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERFAVADH |
| Ga0268264_120571461 | 3300028381 | Switchgrass Rhizosphere | MFYYVMTRGDVLRYAIAFALRRARKIIRGLKDGLTEEERYAVADHVVAQLRERGD |
| Ga0308309_105200781 | 3300028906 | Soil | MTKGEVLRYAIAFALRRSRKIIRGLKQGLTEEERYAVADHAVAQLRECGDPWRL |
| Ga0170824_1016172943 | 3300031231 | Forest Soil | MTKGEVLTYAIAFALRRSRKIIRGLKEGLTEEERYAVADHAVAQL |
| Ga0170818_1035878982 | 3300031474 | Forest Soil | VLRYAIAFALRRSRKIIRGLKKGLTEAERHAVADHAVAQLKERGD |
| Ga0310686_1014076112 | 3300031708 | Soil | MTKGEVLRYAIAFALRRSRKIIRGRKEGLTEEERYAVTDHTVAQ |
| Ga0310686_1128754012 | 3300031708 | Soil | LTKGEVLKYAIAFALRHSRKIIRGLKEGRTEEERYAIADHAVAQLKERGDPRGG |
| Ga0310686_1154344512 | 3300031708 | Soil | MTKGEVLRYAIAFALRRSSKIIPDLKEGLTEEERYAVADHAVAQLKE |
| Ga0307477_102362013 | 3300031753 | Hardwood Forest Soil | LFPLCSIERMTKGEVLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHTVAQLKE |
| Ga0318546_110710721 | 3300031771 | Soil | MTGEEVLRCAIAFAPRRSRKIIRGLKQGLTEDERYAVADQTVALLKERGDT |
| Ga0306919_104441792 | 3300031879 | Soil | MTKGEILRYAIAFALRRSRKIIRGLKEGLTEDERFAVADHT |
| Ga0310913_109783412 | 3300031945 | Soil | MTGEEVLRCAIAFAPRRSRKIIRGLKEGLTEDERYTVADQTVALLKERGDT |
| Ga0310913_113150832 | 3300031945 | Soil | MTKGEVLRYAIAYALRRSRKIIRGLKEGLNEEERFAVADHAVAQLKE |
| Ga0306926_121848971 | 3300031954 | Soil | MTRGDVLRYAIAFALRRARKIIRGLKQGLTEEERYAVAD |
| Ga0311301_1004741613 | 3300032160 | Peatlands Soil | VLRYAIAFALRRSRKIIRGLKEGLTEEERYAVADHAVARLKERGETLGD |
| Ga0306920_1021156811 | 3300032261 | Soil | MTREEVLRCAIAFALRRSRKIIRGLKDGLTEDERYTVADQTVALLKE |
| Ga0306920_1034110031 | 3300032261 | Soil | MTRGEVLRYRIAFALSRASKIVRGLKHGLSEGERCAVADHVVRQLNERGDP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |