NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103718

Metagenome / Metatranscriptome Family F103718

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103718
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 45 residues
Representative Sequence LAARHTGIEPAGLISECLEDLLSFQEGLKQTDDLTLLAVRRAE
Number of Associated Samples 71
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.99 %
% of genes near scaffold ends (potentially truncated) 98.02 %
% of genes from short scaffolds (< 2000 bps) 89.11 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.050 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(42.574 % of family members)
Environment Ontology (ENVO) Unclassified
(38.614 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.564 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.70%    β-sheet: 0.00%    Coil/Unstructured: 49.30%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF05193Peptidase_M16_C 3.96
PF10944DUF2630 2.97
PF00027cNMP_binding 1.98
PF13560HTH_31 1.98
PF00577Usher 0.99
PF13411MerR_1 0.99
PF02866Ldh_1_C 0.99
PF05229SCPU 0.99
PF00326Peptidase_S9 0.99
PF00069Pkinase 0.99
PF00330Aconitase 0.99
PF00296Bac_luciferase 0.99
PF08681DUF1778 0.99
PF16264SatD 0.99
PF00180Iso_dh 0.99
PF06271RDD 0.99
PF03992ABM 0.99
PF00115COX1 0.99
PF00970FAD_binding_6 0.99
PF02371Transposase_20 0.99
PF03473MOSC 0.99
PF05050Methyltransf_21 0.99
PF00535Glycos_transf_2 0.99
PF00578AhpC-TSA 0.99
PF00440TetR_N 0.99
PF07228SpoIIE 0.99
PF00092VWA 0.99
PF04255DUF433 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.96
COG3188Outer membrane usher protein FimD/PapCCell motility [N] 1.98
COG0039Malate/lactate dehydrogenaseEnergy production and conversion [C] 0.99
COG1714Uncharacterized membrane protein YckC, RDD familyFunction unknown [S] 0.99
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.99
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.99
COG3547TransposaseMobilome: prophages, transposons [X] 0.99
COG4453Uncharacterized conserved protein, DUF1778 familyFunction unknown [S] 0.99
COG5430Fimbrial subunit ScuA/B, ScuA/B/SCPU domainExtracellular structures [W] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.05 %
UnclassifiedrootN/A4.95 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000789|JGI1027J11758_12621152All Organisms → cellular organisms → Bacteria → Acidobacteria864Open in IMG/M
3300001593|JGI12635J15846_10150903All Organisms → cellular organisms → Bacteria1594Open in IMG/M
3300001593|JGI12635J15846_10425174All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300001867|JGI12627J18819_10096425All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300002245|JGIcombinedJ26739_100659962All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300002245|JGIcombinedJ26739_100951677All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300004635|Ga0062388_101841149All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300005171|Ga0066677_10639754All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300005176|Ga0066679_10142614All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1494Open in IMG/M
3300005553|Ga0066695_10140694All Organisms → cellular organisms → Bacteria1499Open in IMG/M
3300005557|Ga0066704_10285861All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1117Open in IMG/M
3300005568|Ga0066703_10148539All Organisms → cellular organisms → Bacteria1407Open in IMG/M
3300005569|Ga0066705_10839818All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium546Open in IMG/M
3300005569|Ga0066705_10921628All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300005993|Ga0080027_10027255All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2038Open in IMG/M
3300006162|Ga0075030_100422177All Organisms → cellular organisms → Bacteria → Acidobacteria1062Open in IMG/M
3300006162|Ga0075030_101154836All Organisms → cellular organisms → Bacteria → Acidobacteria609Open in IMG/M
3300006174|Ga0075014_100122442All Organisms → cellular organisms → Bacteria1240Open in IMG/M
3300006800|Ga0066660_11552672All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300007265|Ga0099794_10111925All Organisms → cellular organisms → Bacteria → Acidobacteria1368Open in IMG/M
3300007265|Ga0099794_10539583All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300009088|Ga0099830_11261606All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300009089|Ga0099828_11170468All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300010159|Ga0099796_10437239All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300010337|Ga0134062_10768547All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300011271|Ga0137393_11536226All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300012198|Ga0137364_10835165All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300012198|Ga0137364_11046885All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300012198|Ga0137364_11375577All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300012202|Ga0137363_10002280All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia11375Open in IMG/M
3300012202|Ga0137363_11694190All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium525Open in IMG/M
3300012203|Ga0137399_10393440All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300012203|Ga0137399_11204052All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300012203|Ga0137399_11220640All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300012205|Ga0137362_11250552All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300012208|Ga0137376_11606971All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300012361|Ga0137360_10738371All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300012361|Ga0137360_10770951All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300012361|Ga0137360_11856004All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300012362|Ga0137361_10324880All Organisms → cellular organisms → Bacteria → Acidobacteria1410Open in IMG/M
3300012582|Ga0137358_10051372All Organisms → cellular organisms → Bacteria2746Open in IMG/M
3300012683|Ga0137398_10501004All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300012683|Ga0137398_10963430All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300012917|Ga0137395_10058359All Organisms → cellular organisms → Bacteria → Acidobacteria2454Open in IMG/M
3300012922|Ga0137394_10024779All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4837Open in IMG/M
3300012925|Ga0137419_11249189Not Available623Open in IMG/M
3300012925|Ga0137419_11358465All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300012925|Ga0137419_11923123All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300012927|Ga0137416_10420382All Organisms → cellular organisms → Bacteria → Proteobacteria1136Open in IMG/M
3300012927|Ga0137416_11870963All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300012927|Ga0137416_12172966All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300014166|Ga0134079_10001614All Organisms → cellular organisms → Bacteria → Acidobacteria6099Open in IMG/M
3300014166|Ga0134079_10155932All Organisms → cellular organisms → Bacteria → Acidobacteria925Open in IMG/M
3300015241|Ga0137418_10094649All Organisms → cellular organisms → Bacteria → Acidobacteria2695Open in IMG/M
3300015372|Ga0132256_103355565Not Available538Open in IMG/M
3300018431|Ga0066655_10087845All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1711Open in IMG/M
3300020580|Ga0210403_10301813All Organisms → cellular organisms → Bacteria → Acidobacteria1312Open in IMG/M
3300020581|Ga0210399_10163754All Organisms → cellular organisms → Bacteria1842Open in IMG/M
3300021170|Ga0210400_10370305Not Available1180Open in IMG/M
3300021170|Ga0210400_10518769All Organisms → cellular organisms → Bacteria → Acidobacteria983Open in IMG/M
3300021475|Ga0210392_10058524All Organisms → cellular organisms → Bacteria2403Open in IMG/M
3300021479|Ga0210410_10422754All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1193Open in IMG/M
3300021559|Ga0210409_10006874All Organisms → cellular organisms → Bacteria → Acidobacteria11809Open in IMG/M
3300021559|Ga0210409_11560820All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300024288|Ga0179589_10104021All Organisms → cellular organisms → Bacteria1163Open in IMG/M
3300025527|Ga0208714_1093633All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300026277|Ga0209350_1143525All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300026285|Ga0209438_1074751All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300026296|Ga0209235_1202550All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium681Open in IMG/M
3300026318|Ga0209471_1002817All Organisms → cellular organisms → Bacteria → Acidobacteria9934Open in IMG/M
3300026446|Ga0257178_1038411All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300026482|Ga0257172_1054097All Organisms → cellular organisms → Bacteria → Acidobacteria735Open in IMG/M
3300026482|Ga0257172_1092459All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300026508|Ga0257161_1023393All Organisms → cellular organisms → Bacteria1191Open in IMG/M
3300026524|Ga0209690_1286512All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium521Open in IMG/M
3300026557|Ga0179587_10605072All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300026557|Ga0179587_11144413All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300027034|Ga0209730_1006231All Organisms → cellular organisms → Bacteria → Acidobacteria1066Open in IMG/M
3300027061|Ga0209729_1026949All Organisms → cellular organisms → Bacteria → Acidobacteria706Open in IMG/M
3300027629|Ga0209422_1023855Not Available1517Open in IMG/M
3300027629|Ga0209422_1067898All Organisms → cellular organisms → Bacteria842Open in IMG/M
3300027643|Ga0209076_1136112All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium691Open in IMG/M
3300027671|Ga0209588_1057877All Organisms → cellular organisms → Bacteria1253Open in IMG/M
3300027729|Ga0209248_10126122Not Available768Open in IMG/M
3300027738|Ga0208989_10178165All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300027862|Ga0209701_10447670All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium711Open in IMG/M
3300027875|Ga0209283_10341027All Organisms → cellular organisms → Bacteria → Acidobacteria984Open in IMG/M
3300028536|Ga0137415_10281330All Organisms → cellular organisms → Bacteria → Acidobacteria1469Open in IMG/M
3300028536|Ga0137415_11265735All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300028536|Ga0137415_11330766All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M
3300028536|Ga0137415_11388196All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300030991|Ga0073994_12078355All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300031446|Ga0170820_14653218All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300031720|Ga0307469_10122828All Organisms → cellular organisms → Bacteria1882Open in IMG/M
3300031820|Ga0307473_10365871All Organisms → cellular organisms → Bacteria → Acidobacteria933Open in IMG/M
3300031962|Ga0307479_10003128All Organisms → cellular organisms → Bacteria15053Open in IMG/M
3300031962|Ga0307479_11898400All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300032180|Ga0307471_100385841All Organisms → cellular organisms → Bacteria → Acidobacteria1523Open in IMG/M
3300032180|Ga0307471_100602315All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1258Open in IMG/M
3300032180|Ga0307471_101281930All Organisms → cellular organisms → Bacteria → Acidobacteria895Open in IMG/M
3300032180|Ga0307471_102254052All Organisms → cellular organisms → Bacteria687Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil42.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.90%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil9.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil7.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.96%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.97%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.97%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.98%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.99%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025527Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026446Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-BEnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027034Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027061Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027629Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J11758_1262115213300000789SoilSLAARHTGMEPDGLISKCLEDLLTFGEGLKQTDDLTLLAVRRAD*
JGI12635J15846_1015090313300001593Forest SoilKPAGLISECIGDLLSFGEGSKQTDDLTLLAVRRADKIAPPA*
JGI12635J15846_1042517413300001593Forest SoilKPAGLISECIGDLLSFGEGSKQTDDLTLLAVRRADKSAPPA*
JGI12627J18819_1009642513300001867Forest SoilASRHLGKTPDGLISECLQDLTFFGDGLKQTDDLTLLVVRRAA*
JGIcombinedJ26739_10065996213300002245Forest SoilAARHVRMKPAGLISECIGDLLSFGEGSKQTDDLTLLAVRRADKSAPPA*
JGIcombinedJ26739_10095167723300002245Forest SoilLAARHVRMKPAGLISECIGDLLSFGEGSKQTDDLTLLAVRRADKSALPV*
Ga0062388_10184114913300004635Bog Forest SoilQHKCAESAALISKCLEDLLLFGEGEKQADDLTLLAVRRVA*
Ga0066677_1063975413300005171SoilHTGIEPAGLISKCLEDLQSFAEGVKQPDDLTLLAVQRAE*
Ga0066679_1014261413300005176SoilLHRIRALAARHIGIAPDGLISECLGDLVNFGEGLKQTDDLTLLVVRRAE*
Ga0066695_1014069433300005553SoilALAAQHKGKAPDGLISECLEDLVSFGEGLKQTDDLTLLVVRRAE*
Ga0066704_1028586113300005557SoilGKAPDGLISECLEDLVSFGEGLKQTDDLTLLVVRRSE*
Ga0066703_1014853913300005568SoilAARHTGIEPAGLISKCLEDLQSFAEGLKQPDDLTLLALQRAE*
Ga0066705_1083981823300005569SoilTGIEPAGLISKCLEDLQSFAEGVKQPDDLTLLAVQRAE*
Ga0066705_1092162813300005569SoilAEYGLHRIRTLAARHPGIEPAGLISKCLEDLQGFAEGLKQPDDLTLLAVQRAE*
Ga0080027_1002725513300005993Prmafrost SoilLISECLGDLLSFGEGSKQTDDLTLLAIRRAEKNAPPA*
Ga0075030_10042217713300006162WatershedsEPAGLISKCLEDLLTFREGLKQTDDLTLLAIRRTE*
Ga0075030_10115483613300006162WatershedsEPAGLISKCLEDLLTFREGLKQTDDLTLLAVRRAE*
Ga0075014_10012244213300006174WatershedsERIRTLAGRNRGIEPEGLISKSLEDLVTFREGLKQTDDLTLLAVRRGV*
Ga0066660_1155267213300006800SoilIAPDGLISECLGDLVNFGEGLKQTDDLTLLVVRRAE*
Ga0099794_1011192513300007265Vadose Zone SoilNRAGAEYGLDRIRALAARHTEIESAGLISECLADLLRFQEGLKQTDDLALLAVRRAD*
Ga0099794_1053958313300007265Vadose Zone SoilNHVGAEYGLQRIRTLTARHAGLEPKGLISECLVDLLSFQEGLRQTDDLTLLAVQRAN*
Ga0099830_1126160613300009088Vadose Zone SoilEYGLHRIRTLAAQQTGIESAGLISQCLEDLLIFGEGLKQTDDLTLLAVRRAE*
Ga0099828_1117046813300009089Vadose Zone SoilRIRTLAARHIGIEPAGLISKCLEDLLSFGEGLKQTDDLTLLAVRRAE*
Ga0099796_1043723913300010159Vadose Zone SoilIRTLAARHAGIEPAGLLSECLKDLLSFGEGLKQTDDLTLLVLRRSE*
Ga0134062_1076854713300010337Grasslands SoilRIRTLTAQQTGIESAGLISQCLEDLLIFGEGLKQTDDLTLLAVRRAE*
Ga0137393_1153622623300011271Vadose Zone SoilIEPAGLISECLEDLLSFREGLKQTDDLTLLAVRRAE*
Ga0137364_1083516523300012198Vadose Zone SoilGQEYGLHRIRALAARHGGIAPAGLISECLEDLVSFGEGLKQTDDLTLLVVRRAAQAGVSA
Ga0137364_1104688523300012198Vadose Zone SoilGLQRIRALAARLIGKAPDALISECLEDLLSFGEGLKQTDDLTLLVLRRTE*
Ga0137364_1137557723300012198Vadose Zone SoilTLAARHAGTEPAGLISKCLEDLQSFAEGLKQPDDLTLLAVQRVE*
Ga0137363_10002280123300012202Vadose Zone SoilGLHRIRGLAARHIGKTPDGLISECLEDLMSFGEGLKQTDDLTLLVVRRAE*
Ga0137363_1169419023300012202Vadose Zone SoilEYGLQRIRSLATRHTGTEPAGLISKCLEDLQTFGEGLKQTDDLTLLAVQRAE*
Ga0137399_1039344013300012203Vadose Zone SoilRIQTLAARHTGREPAGLISECLGDLLSFQEGTKQTDDLTLLAVRRAE*
Ga0137399_1120405223300012203Vadose Zone SoilAGQEYGLHRIRGLAARHIGKAPDGLIAECLQDLMSFGDGLKQTDDLTLLVVRRAELSPL*
Ga0137399_1122064013300012203Vadose Zone SoilGLHRIGTLAAQQTGIESAGLISQCLEDLLIFGEGLKQTDDLTLLAVRRAE*
Ga0137362_1125055223300012205Vadose Zone SoilPAGLISECLGDLLSFLEGLKQTDDLTLLALRRAE*
Ga0137376_1160697113300012208Vadose Zone SoilLHRIRTLAAQQTGIESAGLISQCLEDLLIFGEGLKQTDDLTLLAVRRAE*
Ga0137360_1073837113300012361Vadose Zone SoilPAGLISECLEDLLSFREGLKQTDDLTLLVVRRAE*
Ga0137360_1077095113300012361Vadose Zone SoilKTPDGLISECLQDLMSFGDGLKQTDDLTLLVVRRAD*
Ga0137360_1185600413300012361Vadose Zone SoilTGIESAGLISECLEDLLIFGEGLKQADDLTLLAVRRAE*
Ga0137361_1032488023300012362Vadose Zone SoilIRTLAARHIGMEPDGLISKCLEDLLSFGEGLKQTDDLTLLVVRRAE*
Ga0137358_1005137243300012582Vadose Zone SoilGIEPAGLISECLEDLLSFQEGLKQTDDLTLLAVRRAE*
Ga0137398_1050100413300012683Vadose Zone SoilARHTGKEPAGLISECLGDLLSFQEGTKQTDDLTLLAVRRAD*
Ga0137398_1096343013300012683Vadose Zone SoilARHTGKEPAGLISECLGDLLSFQEGTKQTDDLTLLAVRRAE*
Ga0137395_1005835913300012917Vadose Zone SoilVGIAPAGLISECLEDLVSFGEGLKQTDDLTLLAVRRAA*
Ga0137394_1002477963300012922Vadose Zone SoilAARHTGKAPDGLISECLDDLLSFGEGLKQMDDLTLLVVRRTE*
Ga0137419_1124918913300012925Vadose Zone SoilTLAAQHTGIESAGLISECLEDLLIFGEGLKQADDLTLLAVRRAE*
Ga0137419_1135846513300012925Vadose Zone SoilHRIRTLAARHTGIEPAGLISECLEDLLSFREGLKQTDDLTLLAVRRAD*
Ga0137419_1192312313300012925Vadose Zone SoilGIESAGLISQCLEDLLIFGEGLKQTDDLTLLAVRRAE*
Ga0137416_1042038213300012927Vadose Zone SoilHRIRTLAARHTGIEPAGLISECLEDLLSFQEGLKQTDDLTLLAVRRAE*
Ga0137416_1187096323300012927Vadose Zone SoilHRIRTLAARHTGIEPAGLISECLEDLLSFQEGLKQTDDLTLLAVRRAD*
Ga0137416_1217296613300012927Vadose Zone SoilRHTGIEPSGLISECLEDLLSFREGLKQTDDLTLLAVRRAE*
Ga0134079_1000161413300014166Grasslands SoilARHGGIAPAGLISECLEDLVSFGEGLKQTDDLTLLVVRRAAQAGVSA*
Ga0134079_1015593223300014166Grasslands SoilARHGGIAPAGLISECLEDLVSFGEGLKQTDDLTLLVVRRAAEAGVSA*
Ga0137418_1009464933300015241Vadose Zone SoilYGLHRIRTLAARHTGIEPAGLISKCLEDLQSFAEGVKQPDDLTLLAVQRAE*
Ga0132256_10335556513300015372Arabidopsis RhizosphereRNPAGQEYGVPRIRALAARHKGMGADGLISECLEDLASLGAGLKQAHDLTLLVVRRAA*
Ga0066655_1008784523300018431Grasslands SoilGAEYGLHRIRTLAARHPGIEPAGLISKCLEDLQCFAEGLKQPDDLTLLAVQRAE
Ga0210403_1030181313300020580SoilEYGLQRIRALAARHTGIEPDGLISKCLEDLFRFGEGVKQTDDLTLLAVRRAE
Ga0210399_1016375413300020581SoilLAEHHTGKTPDGLISACLEDLVSFGDGLKQTDDLTLLVVRRAE
Ga0210400_1037030523300021170SoilHRIRTLAAQKTGIESAGLISECLEDLLIFGEGLKQTDDLTLLAVRRAE
Ga0210400_1051876913300021170SoilEMESAGLISECLADLLSFQEGLKQTDDLALLAVRRAD
Ga0210392_1005852413300021475SoilEYGLRRIHALADQHRCIEAQELISKCLDDLASFGDGLKQTDDLTLLAVRRVA
Ga0210410_1042275413300021479SoilYGLHRIRMLAARHAGIEAAGLISECIGDLLSFAEGLKQTDDLTLLAVRRADKSSPPA
Ga0210409_10006874113300021559SoilGLQRIRALAARSTGIEPDGLISKCLEDLFLFGEGVKQTDDLTLLAVRRAA
Ga0210409_1156082013300021559SoilTLAARHAGLEPKGLISECLVDLLSFQEGTKQTDDLTLLAVQRAV
Ga0179589_1010402133300024288Vadose Zone SoilTGKTPDGLISECLQDLMSFGDGLKQTDDLTLLVVRRAE
Ga0208714_109363323300025527Arctic Peat SoilNPAGLISECLGDLLSFGGGSKQTDDLTLLAIRRTEKNRAPA
Ga0209350_114352513300026277Grasslands SoilARHVGIAPAGLISECLEDLVSFGEGLKQTDDLTLLVVRRAAQAGVSV
Ga0209438_107475123300026285Grasslands SoilLASQHTGKTPDGLISECLQDLMSFGDGLKQTDDLTLLVVRRAE
Ga0209235_120255013300026296Grasslands SoilIEPAGLISECLEDLQSFGEGLKQPDDLTLLAVQRAE
Ga0209471_100281793300026318SoilYGLHRIRTLAARHAGTEPAGLISKCLEDLQSFAEGLKQPDDLTLLAVQRVE
Ga0257178_103841113300026446SoilAPDALISECLEDLLNFGEGLRQTDDLTLLVVRRAE
Ga0257172_105409723300026482SoilAARHTGIEPAGLISNCLEDLLSFREGLKQTDDLTLLAVRRVE
Ga0257172_109245913300026482SoilVRALAARHTGIEPAGLISECLQDLLGFREGLKQTDDLTLLAVQRAE
Ga0257161_102339313300026508SoilAEYGLHRIRTLAARHAGIEPAGLISECLKDLLSFGEGLKQTDDLTLLAVRRGD
Ga0209690_128651213300026524SoilRNRAGTEYGLHRIQTLAARHTGIEPAGLISKCLEDLQSFAEGVKQPDDLTLLAVQRAE
Ga0179587_1060507223300026557Vadose Zone SoilTLAARHAGIEPAGLISACLKDLLSVGEGLKQTDDLTLLAVRRGD
Ga0179587_1114441313300026557Vadose Zone SoilGKAPDALISECLEDLLNFGEGLRQTDDLTLLVVRRAE
Ga0209730_100623123300027034Forest SoilRNRAGTEYGLDRIRALAARHTEIESAGLISECLADLLSFQEGLKQTDDLALLAVRRAD
Ga0209729_102694923300027061Forest SoilASRHLGKTPDGLISECLQDLTFFGDGLKQTDDLTLLVVRRAA
Ga0209422_102385513300027629Forest SoilARHVRMNPAGLISECIGDLLSFGEGSKQTDDLTLLAVRRADKIAPPA
Ga0209422_106789823300027629Forest SoilISECIGDLLSFGEGSKQTDDLTLLAVRRADKSAPPA
Ga0209076_113611223300027643Vadose Zone SoilIEPAGLISECLKDLLSFGEGLKQTDDLTLLAVRRGD
Ga0209588_105787713300027671Vadose Zone SoilRNRAGAEYGLDRIRALAARHTEIESAGLISECLADLLRFQEGLKQTDDLALLAVRRAD
Ga0209248_1012612213300027729Bog Forest SoilLPRIHKLAAQHNCVEPADLISKCLEDLLLYGEGTKQADDLTLLAVRRAA
Ga0208989_1017816523300027738Forest SoilYGLHRIRTLAEQQVGIESAGLISKCLEDLVIFTEGLKQMDDLTLLAVRRAA
Ga0209701_1044767023300027862Vadose Zone SoilHRIRTLAARHTGIEPAGLITECLEDLLSFREGLKQTDDLTLLAVQRAE
Ga0209283_1034102723300027875Vadose Zone SoilRHTGIEPAGLITECLEDLLSFREGLKQTDDLTLLAVQRAE
Ga0137415_1028133013300028536Vadose Zone SoilEYGLHRIHTLAARHTGIEPAGLISNCLEDLLSFREGLKQTDDLTLLAVRRVE
Ga0137415_1126573513300028536Vadose Zone SoilLAARHTGIEPAGLISECLEDLLSFQEGLKQTDDLTLLAVRRAE
Ga0137415_1133076613300028536Vadose Zone SoilEYGLHRIRTLAARHTGIEPAGLISKCLEDLLSFAEGVKQPDDLTLLAVQRAE
Ga0137415_1138819613300028536Vadose Zone SoilRHTGIEPSGLISECLEDLLSFREGLKQTDDLTLLAVRRAE
Ga0073994_1207835513300030991SoilMKPAGLISECIGDLLSFGEGSKQIDDLTLLAVRRADKSAPPA
Ga0170820_1465321813300031446Forest SoilRCIAAAELIAKCLEDLTTFGDGLKQTDDLTLLAVRRVA
Ga0307469_1012282843300031720Hardwood Forest SoilAERHVGKAADGLISECLQDLVRFGDGLKPSDDLTLLVVRRAD
Ga0307473_1036587113300031820Hardwood Forest SoilKGPAGLISECLEDLLNFQEGIKQTDDLTLLAVRQAA
Ga0307479_1000312813300031962Hardwood Forest SoilRMQPAGLISECLQDLLSFREGLKQTDDLTLLAVRRAE
Ga0307479_1189840013300031962Hardwood Forest SoilARHTGKAPDALISECLEDLLNFGEGLRQTDDLTLLVVRRAE
Ga0307471_10038584113300032180Hardwood Forest SoilEYGLQRIRTLATRHAGIEPVGLISKCLEDLLSFGEGLKQTDDLTLLAVQRAE
Ga0307471_10060231513300032180Hardwood Forest SoilEYGVPRIHALAARHTGKAPDGLISECLADLASFGQGLKQTDDLTLLVVRRAA
Ga0307471_10128193023300032180Hardwood Forest SoilLATRHSTKGPAGLISECLEDLLNFQEGIKQTDDLTLLAVRQAA
Ga0307471_10225405213300032180Hardwood Forest SoilGAEYGLRRIQALAARYTGKEPAGLISECLGDLLSFQEGMKQTDDLTLLAVRRAE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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