Basic Information | |
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Family ID | F103715 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 44 residues |
Representative Sequence | MPTYDRGFQLGLLPEKKWNWRTFATSYGILTGLILLLIIVG |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 1.98 % |
% of genes from short scaffolds (< 2000 bps) | 1.98 % |
Associated GOLD sequencing projects | 89 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.36 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (99.010 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.891 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.663 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (53.465 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 30.43% β-sheet: 0.00% Coil/Unstructured: 69.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Peatland Freshwater Sediment Watersheds Soil Vadose Zone Soil Tropical Forest Soil Peatlands Soil Arctic Peat Soil Soil Soil Forest Soil Hardwood Forest Soil Green-Waste Compost Soil Tropical Peatland Bog Forest Soil Soil Permafrost Forest Soil Soil Soil Fen Palsa Bog Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
prs_06985930 | 2070309004 | Green-Waste Compost | MPTYDRGFQLGLLPERKWNWRTFVASYGILTGLIALLIVVGIMA |
JGI12649J13570_10149232 | 3300001175 | Forest Soil | MPTYDCSFQLGLLPXKKWNWRTFATSYGILVALILLLIVVGIMTSDTLLNTAND |
JGI12695J13573_10079161 | 3300001180 | Forest Soil | MPTYDRNFELGLLPEKKWNWRTFATSYGIVTALILFLIFFGIIMPDTLLIAPI |
Ga0062384_1008012332 | 3300004082 | Bog Forest Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGLLAGLILLLIVVG |
Ga0062386_1003435141 | 3300004152 | Bog Forest Soil | MPTYDRGFKLGLLPEKKWNWRTFATSYGLLTGMIVLLILIGIMTT |
Ga0062388_1000097901 | 3300004635 | Bog Forest Soil | MPTYDRGFKLGLLPERKWNWRTFAASYGILVGLILLLIIVGIMATDTIIPIVSYHV |
Ga0066704_102378071 | 3300005557 | Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGLLTGLILLLILVGIMTSDTLI |
Ga0066703_105084871 | 3300005568 | Soil | MPTYDRGFQLGLLPEKKWNWRTFVASYGILMCLILLLILFGIMMPDTL |
Ga0066790_103030171 | 3300005995 | Soil | MPTEQGSFQLGLLPERKWNWRTFVASYGIVTGLII |
Ga0075019_105065981 | 3300006086 | Watersheds | MPTYDGGFQLGLLPEKKRDWRTFAASYILITALVIFFIMLN |
Ga0075014_1003220881 | 3300006174 | Watersheds | MPTYDRGFQLGLLPQKKWDWRTFAASYGIVAALLLFLCFFG |
Ga0075521_102629561 | 3300006642 | Arctic Peat Soil | MPTYDRGFQLGLLPEKKWDWRTFAASYGILSGLILLLIIVGIMASDTLLPGM |
Ga0099794_106178521 | 3300007265 | Vadose Zone Soil | MPTYDRGFQLGLLPEKKWDWRTFATSYGLLVCLILC |
Ga0099830_113387371 | 3300009088 | Vadose Zone Soil | MMPTYDRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMILFGIIMP |
Ga0099828_109204151 | 3300009089 | Vadose Zone Soil | MPTYYRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMI |
Ga0116124_11560332 | 3300009634 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFLLVVGIVLPDT |
Ga0116113_10500341 | 3300009638 | Peatland | MPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSDTLLSAVN |
Ga0116217_109066791 | 3300009700 | Peatlands Soil | MPTNDGGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVVG |
Ga0116134_10121641 | 3300009764 | Peatland | MPTYDRGFKLGLLPERKWNWRTFAASYGILVALIVLMIVVGI |
Ga0116134_11872152 | 3300009764 | Peatland | MPTNDRSFQLGLLPETKWNWRTFATSYGIVTVLILFLISFGILVPGTLLITNYHV |
Ga0116219_105112791 | 3300009824 | Peatlands Soil | MPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVV |
Ga0126384_119463361 | 3300010046 | Tropical Forest Soil | MPTYDRGFRLGLLPEKKWDWRTFAASYGLLSAFILLLLLVGLLMP |
Ga0074046_100658911 | 3300010339 | Bog Forest Soil | MPTYQRGFQLGLLPEKKWNWRTFATSYGILTALILL |
Ga0074046_109317611 | 3300010339 | Bog Forest Soil | MPTYDGDFQLGLLPEKQWNWRTFVASYGILTCLILLLIVVGIVVPDTL |
Ga0074044_105908111 | 3300010343 | Bog Forest Soil | MPTYQRGFQLGLLPEKKWDWRTFATSYGILTALILLLI |
Ga0126379_117832301 | 3300010366 | Tropical Forest Soil | MYSRGFELGLLPENKWNWRTFAASYGFITLLILFFLIFGLIMPES |
Ga0137363_112379672 | 3300012202 | Vadose Zone Soil | MPAYDRSFQLGLLPEKKWNWRTFATSYGIVTALVLFLILSGII |
Ga0137362_113883521 | 3300012205 | Vadose Zone Soil | MMPTYYRSFQLGLLPEKKWNWRTFAASYGFLTCLILLLILFGIMMPDT |
Ga0137366_100818741 | 3300012354 | Vadose Zone Soil | MSTYARGFQLGLLPEKRWDWRTFAASYGLLAALILFFILFGIALPDSLQLNLNY |
Ga0137398_108905661 | 3300012683 | Vadose Zone Soil | MPTYARGFQLGLLPEKKWDWRTFATSYGLLVCLILCF |
Ga0137394_108501961 | 3300012922 | Vadose Zone Soil | MPTYDRGFRLGLLPEKKWNWRTFAASYGLLICFILLILLFGL |
Ga0126369_124637661 | 3300012971 | Tropical Forest Soil | MPTYDRSFQLGILPEKKWDWRTFAASYGFVIFLLLLSIVLGLVIPEKLQLKPI |
Ga0182024_119064731 | 3300014501 | Permafrost | MPTYDRGFQLGLLPEKKWNWRTFATSYGLLTGLILLLIVVG |
Ga0187801_103110862 | 3300017933 | Freshwater Sediment | MRTYYRGFQLGLLPERRWNWRTFAASYGILVALILLMIVIGI |
Ga0187848_103544432 | 3300017935 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFAASYGMVTGLILL |
Ga0187853_104078411 | 3300017940 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFVASYGMLTALILFLLVVGIVL |
Ga0187891_12826021 | 3300017996 | Peatland | MPTEDREFELGLLPEKKWNWRTFVASYGILGILILLLI |
Ga0187876_10476221 | 3300018003 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFVASYGIVTGLILFLIF |
Ga0187884_100717092 | 3300018009 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFLLVVGIVLPE |
Ga0187886_11552951 | 3300018018 | Peatland | MPTYDRGFQLGLLPERKWNWRTFAASYGILTGLILLLIIC |
Ga0187881_102610242 | 3300018024 | Peatland | MPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFLLVVGIVLPETL |
Ga0187869_104649171 | 3300018030 | Peatland | MPTNDGGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVVGMVVPD |
Ga0187862_107437362 | 3300018040 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFVASYGIVTGLILFLIFFGIIMPDTLQ |
Ga0187784_101576041 | 3300018062 | Tropical Peatland | MPTRDGGFQLGLLPEKKWNWRTFAASYGMLTGLILFFL |
Ga0187772_111960161 | 3300018085 | Tropical Peatland | MPTRDGGFQLGLLPEKKWNWRTFAASYGMLTGLILA |
Ga0187772_112233882 | 3300018085 | Tropical Peatland | MPSDDRSFQLGLLPETKWNWRTFATSYGIVTGLVLFLISF |
Ga0187770_103100411 | 3300018090 | Tropical Peatland | MPTRNREFQLGLLPEKKWDWRTFVASYGIVTALILFLICFGIIV |
Ga0187770_107601271 | 3300018090 | Tropical Peatland | MPTYDGGFQLGLLPENKWNWRTFVASYGILTCLILLLL |
Ga0179592_100747871 | 3300020199 | Vadose Zone Soil | MPTYDCSYQLGLLPEKKWNWRTFATSYGLLTGLILLLIL |
Ga0210406_104940742 | 3300021168 | Soil | MPTYDRGFQLGLLPEKKWDWRTFATSYGLLTGLILLL |
Ga0210400_107675161 | 3300021170 | Soil | MPTANGGFQLGLLPEKKWNWRTFATSYGILAGLILLLAIVGVMTSDSLLTGID |
Ga0210383_110404151 | 3300021407 | Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGILAGLILLLIIVGVMTSDNLIPGVTYH |
Ga0210402_106774501 | 3300021478 | Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGLLTALIVLM |
Ga0179589_105485431 | 3300024288 | Vadose Zone Soil | MPTYDRGFRLGLLPEKKWDWRTFAASYGLLTAFILLLLLFGLLMTP |
Ga0208936_10552791 | 3300025404 | Peatland | MPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSDTLLSA |
Ga0208935_10279141 | 3300025414 | Peatland | MSTDDRDFQLGLLPEKKWDWRTFAASYGIVTALVL |
Ga0208189_10663472 | 3300025444 | Peatland | MPTYDRGFQLGLLPEKKWNWRTFATSYGILTGLILLLIIVG |
Ga0208188_10462372 | 3300025507 | Peatland | MPTYNRGFQLGLLPEKKWDWRTFAASYGIVAGLILFLISFG |
Ga0207927_11415871 | 3300025579 | Arctic Peat Soil | MPTYDRGFQLGLLPEKKWNWRTFVASYGIVSGLILFLILFGIIMPDT |
Ga0207926_10931292 | 3300025619 | Arctic Peat Soil | MPTYDRGFQLGLLPEKKWNWRTFVASYGILTGLILLLIL |
Ga0209839_100453892 | 3300026294 | Soil | MPTYDGNFQLGLLPEKKWNWRTFATSYGILIGFVLLLIVVGVMTSD |
Ga0209471_13236561 | 3300026318 | Soil | MPAYDRSFQLGLLPEKKWNWRTFATSYGIVTALVLFLILSGIISPDTLLIAPIYR |
Ga0257180_10621981 | 3300026354 | Soil | MPTYYRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMILFG |
Ga0255351_10049095 | 3300026456 | Soil | MPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSDTLLSAVNYHV |
Ga0257177_10512271 | 3300026480 | Soil | MPTYDRGFQLGLLPEKKWDWRTFATSYGILTGLILL |
Ga0257160_11067661 | 3300026489 | Soil | MPTYDGSFQLGLLPEKKWNWRTFATSYGIVTALILLLIF |
Ga0208861_1080242 | 3300027097 | Forest Soil | MPTYDRGFQLGLLPEKKWNWRTFAASYGILSGLILLL |
Ga0208488_10442202 | 3300027110 | Forest Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGILAALILLLIVVGIMTSDTLLNTA |
Ga0208199_11182872 | 3300027497 | Peatlands Soil | MPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVVGMVVPDT |
Ga0209422_10178721 | 3300027629 | Forest Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGLLTGLILLLILVGIMTSDTL |
Ga0209420_11127661 | 3300027648 | Forest Soil | MPTYDRGFQLGLLPEKKWNWRTFAASYGILSGLILLLI |
Ga0209248_100528223 | 3300027729 | Bog Forest Soil | MPTYDHSFQLGLLPERKWNWRTFATSYGILLGLILLLIVAGIMTS |
Ga0209772_101943361 | 3300027768 | Bog Forest Soil | MPRYDRGFQLGLLPEKKWDWRTFATSYGILAGLILLLIVVGV |
Ga0209274_101519111 | 3300027853 | Soil | MPTYDRGFQLGLLPEKKWDWRTFAASYGILSGLILLLIIVGI |
Ga0209274_106856271 | 3300027853 | Soil | MPTANGGFQLGLLPEKKWNWRTFATSYGILAGLILLLAIVGVMTSDSL |
Ga0209380_102950321 | 3300027889 | Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYRILAALILLLI |
Ga0209006_100057991 | 3300027908 | Forest Soil | MPTYDRGFQLGLLPEKKWNWRTFATSYGILAGLILLLIIVGV |
Ga0255348_10135571 | 3300028268 | Soil | MPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSD |
Ga0137415_108824592 | 3300028536 | Vadose Zone Soil | MPTYDVSYQLGLLPEKKWNWRTFVASYGFLTGLILLLILF |
Ga0257175_11191882 | 3300028673 | Soil | MPTYYRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMILFGIIMP |
Ga0302279_103709132 | 3300028783 | Bog | MPTKDGGFQLGLLPEKKWDWRTFATSYGILTAFVILLAIVGIMAQDSLITA |
Ga0302265_11216922 | 3300028859 | Bog | MPTKDGGFQLGLLPEKKWDWRTFATSYGILTAFVILLAIVGIMAQDS |
Ga0302207_10960742 | 3300030230 | Fen | MATYNHDFQLGLLPEKKWNWRTFAASYGLLVFLILFLIVFGILMPDTL |
Ga0310037_101320541 | 3300030494 | Peatlands Soil | MPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILF |
Ga0311356_112791741 | 3300030617 | Palsa | MPTGMSTDDRSFQLGLLPEQKWNWRTFATSYGIVMALILFLIFFGI |
Ga0311354_109382782 | 3300030618 | Palsa | MPTSDRSFQLGLLPEKKWDWRTFVASYGMVTSLILLMIFFGII |
Ga0265460_103410202 | 3300030740 | Soil | MPTANGGFQLGLLPEKKWDWRTFATSYGLLASLILLLAIVGVMTSDSLLPGINYHVT |
Ga0265762_11842851 | 3300030760 | Soil | MPTYDRGFQLGLLPEKKWNWRTFAASYGILAGLILLLI |
Ga0075371_108543822 | 3300030974 | Soil | MPAYDRSFQLGLLPEKKWNWRTFATSYGIVTALILLLIFFGII |
Ga0073994_123810652 | 3300030991 | Soil | MPTYDCSYQLGLLPEKKWNWRTFVASYGFLTGLILLLILFGIIMPDT |
Ga0170834_1043972892 | 3300031057 | Forest Soil | MPAYDGSFQLGLLPAKKWNWRTFATSYGILTALILLLIFFGIISPDTLLI |
Ga0302325_115594621 | 3300031234 | Palsa | MPKDDSSFQLGLLPEKKWDWRTFAASYGIVTAMVLFLIFFGILVPG |
Ga0302324_10000763016 | 3300031236 | Palsa | MPTYERGFQLGLLPEKKWDWRTFVASYGILTGLIVLIVVCGIMM |
Ga0265316_103223491 | 3300031344 | Rhizosphere | MATSNREFQLGLLPEKKWDWRTFVASYGIVSALILFLICFGIIMPDTLRIM |
Ga0265316_112397601 | 3300031344 | Rhizosphere | MPTYDREFQLGLLPEKKWNWRTFAASYGILVGLILLLI |
Ga0302321_1003812712 | 3300031726 | Fen | MSMNREFRLGLLPEKKWDWRTFATSYGMLVALILLLLVVNVLMPQ |
Ga0307470_116517682 | 3300032174 | Hardwood Forest Soil | MPTYDGGFQLGLLPEKKWNWRTFATSYGLLTGLILLLILFAIIMPDT |
Ga0335080_118147812 | 3300032828 | Soil | MPTLELDSRLGLLPEKKWNWRTFLASYGLVCALILLLI |
Ga0335081_119135911 | 3300032892 | Soil | MPTYQRSFQLGLLPEKKYDWRTFAASYGLITALIIFFIL |
Ga0335084_118136551 | 3300033004 | Soil | MPTYDRGFQLGILPEKKWDWRTFAASYGFVIFLLLLSIV |
Ga0334847_011478_813_920 | 3300033826 | Soil | MMPTDDRSFQLGLLPEKKWNWRTFVASYGIVSGLIV |
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