NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103715

Metagenome / Metatranscriptome Family F103715

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103715
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 44 residues
Representative Sequence MPTYDRGFQLGLLPEKKWNWRTFATSYGILTGLILLLIIVG
Number of Associated Samples 95
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 1.98 %
% of genes from short scaffolds (< 2000 bps) 1.98 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.010 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(10.891 % of family members)
Environment Ontology (ENVO) Unclassified
(33.663 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.465 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1prs_06985930
2JGI12649J13570_10149232
3JGI12695J13573_10079161
4Ga0062384_1008012332
5Ga0062386_1003435141
6Ga0062388_1000097901
7Ga0066704_102378071
8Ga0066703_105084871
9Ga0066790_103030171
10Ga0075019_105065981
11Ga0075014_1003220881
12Ga0075521_102629561
13Ga0099794_106178521
14Ga0099830_113387371
15Ga0099828_109204151
16Ga0116124_11560332
17Ga0116113_10500341
18Ga0116217_109066791
19Ga0116134_10121641
20Ga0116134_11872152
21Ga0116219_105112791
22Ga0126384_119463361
23Ga0074046_100658911
24Ga0074046_109317611
25Ga0074044_105908111
26Ga0126379_117832301
27Ga0137363_112379672
28Ga0137362_113883521
29Ga0137366_100818741
30Ga0137398_108905661
31Ga0137394_108501961
32Ga0126369_124637661
33Ga0182024_119064731
34Ga0187801_103110862
35Ga0187848_103544432
36Ga0187853_104078411
37Ga0187891_12826021
38Ga0187876_10476221
39Ga0187884_100717092
40Ga0187886_11552951
41Ga0187881_102610242
42Ga0187869_104649171
43Ga0187862_107437362
44Ga0187784_101576041
45Ga0187772_111960161
46Ga0187772_112233882
47Ga0187770_103100411
48Ga0187770_107601271
49Ga0179592_100747871
50Ga0210406_104940742
51Ga0210400_107675161
52Ga0210383_110404151
53Ga0210402_106774501
54Ga0179589_105485431
55Ga0208936_10552791
56Ga0208935_10279141
57Ga0208189_10663472
58Ga0208188_10462372
59Ga0207927_11415871
60Ga0207926_10931292
61Ga0209839_100453892
62Ga0209471_13236561
63Ga0257180_10621981
64Ga0255351_10049095
65Ga0257177_10512271
66Ga0257160_11067661
67Ga0208861_1080242
68Ga0208488_10442202
69Ga0208199_11182872
70Ga0209422_10178721
71Ga0209420_11127661
72Ga0209248_100528223
73Ga0209772_101943361
74Ga0209274_101519111
75Ga0209274_106856271
76Ga0209380_102950321
77Ga0209006_100057991
78Ga0255348_10135571
79Ga0137415_108824592
80Ga0257175_11191882
81Ga0302279_103709132
82Ga0302265_11216922
83Ga0302207_10960742
84Ga0310037_101320541
85Ga0311356_112791741
86Ga0311354_109382782
87Ga0265460_103410202
88Ga0265762_11842851
89Ga0075371_108543822
90Ga0073994_123810652
91Ga0170834_1043972892
92Ga0302325_115594621
93Ga0302324_10000763016
94Ga0265316_103223491
95Ga0265316_112397601
96Ga0302321_1003812712
97Ga0307470_116517682
98Ga0335080_118147812
99Ga0335081_119135911
100Ga0335084_118136551
101Ga0334847_011478_813_920
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 30.43%    β-sheet: 0.00%    Coil/Unstructured: 69.57%
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Variant

510152025303540MPTYDRGFQLGLLPEKKWNWRTFATSYGILTGLILLLIIVGExtracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Peatland
Bog Forest Soil
Peatland
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Peatlands Soil
Arctic Peat Soil
Soil
Soil
Forest Soil
Hardwood Forest Soil
Green-Waste Compost
Soil
Tropical Peatland
Bog Forest Soil
Soil
Permafrost
Forest Soil
Soil
Soil
Fen
Palsa
Bog
Rhizosphere
8.9%5.0%7.9%10.9%3.0%4.0%3.0%3.0%10.9%3.0%5.0%3.0%6.9%3.0%3.0%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
prs_069859302070309004Green-Waste CompostMPTYDRGFQLGLLPERKWNWRTFVASYGILTGLIALLIVVGIMA
JGI12649J13570_101492323300001175Forest SoilMPTYDCSFQLGLLPXKKWNWRTFATSYGILVALILLLIVVGIMTSDTLLNTAND
JGI12695J13573_100791613300001180Forest SoilMPTYDRNFELGLLPEKKWNWRTFATSYGIVTALILFLIFFGIIMPDTLLIAPI
Ga0062384_10080123323300004082Bog Forest SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGLLAGLILLLIVVG
Ga0062386_10034351413300004152Bog Forest SoilMPTYDRGFKLGLLPEKKWNWRTFATSYGLLTGMIVLLILIGIMTT
Ga0062388_10000979013300004635Bog Forest SoilMPTYDRGFKLGLLPERKWNWRTFAASYGILVGLILLLIIVGIMATDTIIPIVSYHV
Ga0066704_1023780713300005557SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGLLTGLILLLILVGIMTSDTLI
Ga0066703_1050848713300005568SoilMPTYDRGFQLGLLPEKKWNWRTFVASYGILMCLILLLILFGIMMPDTL
Ga0066790_1030301713300005995SoilMPTEQGSFQLGLLPERKWNWRTFVASYGIVTGLII
Ga0075019_1050659813300006086WatershedsMPTYDGGFQLGLLPEKKRDWRTFAASYILITALVIFFIMLN
Ga0075014_10032208813300006174WatershedsMPTYDRGFQLGLLPQKKWDWRTFAASYGIVAALLLFLCFFG
Ga0075521_1026295613300006642Arctic Peat SoilMPTYDRGFQLGLLPEKKWDWRTFAASYGILSGLILLLIIVGIMASDTLLPGM
Ga0099794_1061785213300007265Vadose Zone SoilMPTYDRGFQLGLLPEKKWDWRTFATSYGLLVCLILC
Ga0099830_1133873713300009088Vadose Zone SoilMMPTYDRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMILFGIIMP
Ga0099828_1092041513300009089Vadose Zone SoilMPTYYRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMI
Ga0116124_115603323300009634PeatlandMPTYDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFLLVVGIVLPDT
Ga0116113_105003413300009638PeatlandMPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSDTLLSAVN
Ga0116217_1090667913300009700Peatlands SoilMPTNDGGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVVG
Ga0116134_101216413300009764PeatlandMPTYDRGFKLGLLPERKWNWRTFAASYGILVALIVLMIVVGI
Ga0116134_118721523300009764PeatlandMPTNDRSFQLGLLPETKWNWRTFATSYGIVTVLILFLISFGILVPGTLLITNYHV
Ga0116219_1051127913300009824Peatlands SoilMPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVV
Ga0126384_1194633613300010046Tropical Forest SoilMPTYDRGFRLGLLPEKKWDWRTFAASYGLLSAFILLLLLVGLLMP
Ga0074046_1006589113300010339Bog Forest SoilMPTYQRGFQLGLLPEKKWNWRTFATSYGILTALILL
Ga0074046_1093176113300010339Bog Forest SoilMPTYDGDFQLGLLPEKQWNWRTFVASYGILTCLILLLIVVGIVVPDTL
Ga0074044_1059081113300010343Bog Forest SoilMPTYQRGFQLGLLPEKKWDWRTFATSYGILTALILLLI
Ga0126379_1178323013300010366Tropical Forest SoilMYSRGFELGLLPENKWNWRTFAASYGFITLLILFFLIFGLIMPES
Ga0137363_1123796723300012202Vadose Zone SoilMPAYDRSFQLGLLPEKKWNWRTFATSYGIVTALVLFLILSGII
Ga0137362_1138835213300012205Vadose Zone SoilMMPTYYRSFQLGLLPEKKWNWRTFAASYGFLTCLILLLILFGIMMPDT
Ga0137366_1008187413300012354Vadose Zone SoilMSTYARGFQLGLLPEKRWDWRTFAASYGLLAALILFFILFGIALPDSLQLNLNY
Ga0137398_1089056613300012683Vadose Zone SoilMPTYARGFQLGLLPEKKWDWRTFATSYGLLVCLILCF
Ga0137394_1085019613300012922Vadose Zone SoilMPTYDRGFRLGLLPEKKWNWRTFAASYGLLICFILLILLFGL
Ga0126369_1246376613300012971Tropical Forest SoilMPTYDRSFQLGILPEKKWDWRTFAASYGFVIFLLLLSIVLGLVIPEKLQLKPI
Ga0182024_1190647313300014501PermafrostMPTYDRGFQLGLLPEKKWNWRTFATSYGLLTGLILLLIVVG
Ga0187801_1031108623300017933Freshwater SedimentMRTYYRGFQLGLLPERRWNWRTFAASYGILVALILLMIVIGI
Ga0187848_1035444323300017935PeatlandMPTYDRGFQLGLLPEKKWNWRTFAASYGMVTGLILL
Ga0187853_1040784113300017940PeatlandMPTYDRGFQLGLLPEKKWNWRTFVASYGMLTALILFLLVVGIVL
Ga0187891_128260213300017996PeatlandMPTEDREFELGLLPEKKWNWRTFVASYGILGILILLLI
Ga0187876_104762213300018003PeatlandMPTYDRGFQLGLLPEKKWNWRTFVASYGIVTGLILFLIF
Ga0187884_1007170923300018009PeatlandMPTYDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFLLVVGIVLPE
Ga0187886_115529513300018018PeatlandMPTYDRGFQLGLLPERKWNWRTFAASYGILTGLILLLIIC
Ga0187881_1026102423300018024PeatlandMPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFLLVVGIVLPETL
Ga0187869_1046491713300018030PeatlandMPTNDGGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVVGMVVPD
Ga0187862_1074373623300018040PeatlandMPTYDRGFQLGLLPEKKWNWRTFVASYGIVTGLILFLIFFGIIMPDTLQ
Ga0187784_1015760413300018062Tropical PeatlandMPTRDGGFQLGLLPEKKWNWRTFAASYGMLTGLILFFL
Ga0187772_1119601613300018085Tropical PeatlandMPTRDGGFQLGLLPEKKWNWRTFAASYGMLTGLILA
Ga0187772_1122338823300018085Tropical PeatlandMPSDDRSFQLGLLPETKWNWRTFATSYGIVTGLVLFLISF
Ga0187770_1031004113300018090Tropical PeatlandMPTRNREFQLGLLPEKKWDWRTFVASYGIVTALILFLICFGIIV
Ga0187770_1076012713300018090Tropical PeatlandMPTYDGGFQLGLLPENKWNWRTFVASYGILTCLILLLL
Ga0179592_1007478713300020199Vadose Zone SoilMPTYDCSYQLGLLPEKKWNWRTFATSYGLLTGLILLLIL
Ga0210406_1049407423300021168SoilMPTYDRGFQLGLLPEKKWDWRTFATSYGLLTGLILLL
Ga0210400_1076751613300021170SoilMPTANGGFQLGLLPEKKWNWRTFATSYGILAGLILLLAIVGVMTSDSLLTGID
Ga0210383_1104041513300021407SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGILAGLILLLIIVGVMTSDNLIPGVTYH
Ga0210402_1067745013300021478SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGLLTALIVLM
Ga0179589_1054854313300024288Vadose Zone SoilMPTYDRGFRLGLLPEKKWDWRTFAASYGLLTAFILLLLLFGLLMTP
Ga0208936_105527913300025404PeatlandMPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSDTLLSA
Ga0208935_102791413300025414PeatlandMSTDDRDFQLGLLPEKKWDWRTFAASYGIVTALVL
Ga0208189_106634723300025444PeatlandMPTYDRGFQLGLLPEKKWNWRTFATSYGILTGLILLLIIVG
Ga0208188_104623723300025507PeatlandMPTYNRGFQLGLLPEKKWDWRTFAASYGIVAGLILFLISFG
Ga0207927_114158713300025579Arctic Peat SoilMPTYDRGFQLGLLPEKKWNWRTFVASYGIVSGLILFLILFGIIMPDT
Ga0207926_109312923300025619Arctic Peat SoilMPTYDRGFQLGLLPEKKWNWRTFVASYGILTGLILLLIL
Ga0209839_1004538923300026294SoilMPTYDGNFQLGLLPEKKWNWRTFATSYGILIGFVLLLIVVGVMTSD
Ga0209471_132365613300026318SoilMPAYDRSFQLGLLPEKKWNWRTFATSYGIVTALVLFLILSGIISPDTLLIAPIYR
Ga0257180_106219813300026354SoilMPTYYRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMILFG
Ga0255351_100490953300026456SoilMPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSDTLLSAVNYHV
Ga0257177_105122713300026480SoilMPTYDRGFQLGLLPEKKWDWRTFATSYGILTGLILL
Ga0257160_110676613300026489SoilMPTYDGSFQLGLLPEKKWNWRTFATSYGIVTALILLLIF
Ga0208861_10802423300027097Forest SoilMPTYDRGFQLGLLPEKKWNWRTFAASYGILSGLILLL
Ga0208488_104422023300027110Forest SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGILAALILLLIVVGIMTSDTLLNTA
Ga0208199_111828723300027497Peatlands SoilMPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILFFLVVGMVVPDT
Ga0209422_101787213300027629Forest SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGLLTGLILLLILVGIMTSDTL
Ga0209420_111276613300027648Forest SoilMPTYDRGFQLGLLPEKKWNWRTFAASYGILSGLILLLI
Ga0209248_1005282233300027729Bog Forest SoilMPTYDHSFQLGLLPERKWNWRTFATSYGILLGLILLLIVAGIMTS
Ga0209772_1019433613300027768Bog Forest SoilMPRYDRGFQLGLLPEKKWDWRTFATSYGILAGLILLLIVVGV
Ga0209274_1015191113300027853SoilMPTYDRGFQLGLLPEKKWDWRTFAASYGILSGLILLLIIVGI
Ga0209274_1068562713300027853SoilMPTANGGFQLGLLPEKKWNWRTFATSYGILAGLILLLAIVGVMTSDSL
Ga0209380_1029503213300027889SoilMPTYDRGFQLGLLPEKKWNWRTFATSYRILAALILLLI
Ga0209006_1000579913300027908Forest SoilMPTYDRGFQLGLLPEKKWNWRTFATSYGILAGLILLLIIVGV
Ga0255348_101355713300028268SoilMPTIDGGFQLGLLPEKKWNWRTFLASYGILAAFVLLLIVTGIMTSD
Ga0137415_1088245923300028536Vadose Zone SoilMPTYDVSYQLGLLPEKKWNWRTFVASYGFLTGLILLLILF
Ga0257175_111918823300028673SoilMPTYYRSFQLGLLPEKKWNWRTFVASYGMLTGLILLMILFGIIMP
Ga0302279_1037091323300028783BogMPTKDGGFQLGLLPEKKWDWRTFATSYGILTAFVILLAIVGIMAQDSLITA
Ga0302265_112169223300028859BogMPTKDGGFQLGLLPEKKWDWRTFATSYGILTAFVILLAIVGIMAQDS
Ga0302207_109607423300030230FenMATYNHDFQLGLLPEKKWNWRTFAASYGLLVFLILFLIVFGILMPDTL
Ga0310037_1013205413300030494Peatlands SoilMPTSDRGFQLGLLPEKKWNWRTFAASYGMLTGLILF
Ga0311356_1127917413300030617PalsaMPTGMSTDDRSFQLGLLPEQKWNWRTFATSYGIVMALILFLIFFGI
Ga0311354_1093827823300030618PalsaMPTSDRSFQLGLLPEKKWDWRTFVASYGMVTSLILLMIFFGII
Ga0265460_1034102023300030740SoilMPTANGGFQLGLLPEKKWDWRTFATSYGLLASLILLLAIVGVMTSDSLLPGINYHVT
Ga0265762_118428513300030760SoilMPTYDRGFQLGLLPEKKWNWRTFAASYGILAGLILLLI
Ga0075371_1085438223300030974SoilMPAYDRSFQLGLLPEKKWNWRTFATSYGIVTALILLLIFFGII
Ga0073994_1238106523300030991SoilMPTYDCSYQLGLLPEKKWNWRTFVASYGFLTGLILLLILFGIIMPDT
Ga0170834_10439728923300031057Forest SoilMPAYDGSFQLGLLPAKKWNWRTFATSYGILTALILLLIFFGIISPDTLLI
Ga0302325_1155946213300031234PalsaMPKDDSSFQLGLLPEKKWDWRTFAASYGIVTAMVLFLIFFGILVPG
Ga0302324_100007630163300031236PalsaMPTYERGFQLGLLPEKKWDWRTFVASYGILTGLIVLIVVCGIMM
Ga0265316_1032234913300031344RhizosphereMATSNREFQLGLLPEKKWDWRTFVASYGIVSALILFLICFGIIMPDTLRIM
Ga0265316_1123976013300031344RhizosphereMPTYDREFQLGLLPEKKWNWRTFAASYGILVGLILLLI
Ga0302321_10038127123300031726FenMSMNREFRLGLLPEKKWDWRTFATSYGMLVALILLLLVVNVLMPQ
Ga0307470_1165176823300032174Hardwood Forest SoilMPTYDGGFQLGLLPEKKWNWRTFATSYGLLTGLILLLILFAIIMPDT
Ga0335080_1181478123300032828SoilMPTLELDSRLGLLPEKKWNWRTFLASYGLVCALILLLI
Ga0335081_1191359113300032892SoilMPTYQRSFQLGLLPEKKYDWRTFAASYGLITALIIFFIL
Ga0335084_1181365513300033004SoilMPTYDRGFQLGILPEKKWDWRTFAASYGFVIFLLLLSIV
Ga0334847_011478_813_9203300033826SoilMMPTDDRSFQLGLLPEKKWNWRTFVASYGIVSGLIV


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