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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103701 |
| Family Type | Metagenome |
| Number of Sequences | 101 |
| Average Sequence Length | 62 residues |
| Representative Sequence | MSPQVTAAIIAASVGVVTLIGTLAAQYFGRRATSRDTQQALEEQRKQLDRTLAEQRTRTL |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.52 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.772 % of family members) |
| Environment Ontology (ENVO) | Unclassified (18.812 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.545 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 64.77% β-sheet: 0.00% Coil/Unstructured: 35.23% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF00436 | SSB | 2.97 |
| PF02796 | HTH_7 | 2.97 |
| PF00589 | Phage_integrase | 2.97 |
| PF00106 | adh_short | 1.98 |
| PF13576 | Pentapeptide_3 | 1.98 |
| PF13546 | DDE_5 | 1.98 |
| PF00717 | Peptidase_S24 | 0.99 |
| PF01527 | HTH_Tnp_1 | 0.99 |
| PF01266 | DAO | 0.99 |
| PF07690 | MFS_1 | 0.99 |
| PF12840 | HTH_20 | 0.99 |
| PF00239 | Resolvase | 0.99 |
| PF00455 | DeoRC | 0.99 |
| PF00872 | Transposase_mut | 0.99 |
| PF04024 | PspC | 0.99 |
| PF13602 | ADH_zinc_N_2 | 0.99 |
| PF06742 | DUF1214 | 0.99 |
| PF13592 | HTH_33 | 0.99 |
| PF06103 | DUF948 | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0629 | Single-stranded DNA-binding protein | Replication, recombination and repair [L] | 2.97 |
| COG2965 | Primosomal replication protein N | Replication, recombination and repair [L] | 2.97 |
| COG1349 | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Transcription [K] | 1.98 |
| COG0120 | Ribose 5-phosphate isomerase | Carbohydrate transport and metabolism [G] | 0.99 |
| COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 0.99 |
| COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 0.99 |
| COG3328 | Transposase (or an inactivated derivative) | Mobilome: prophages, transposons [X] | 0.99 |
| COG4768 | Uncharacterized conserved protein YoxC, contains an MCP-like domain | Function unknown [S] | 0.99 |
| COG5361 | Uncharacterized conserved protein | Mobilome: prophages, transposons [X] | 0.99 |
| COG5402 | Uncharacterized protein, contains DUF1214 domain | Function unknown [S] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
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| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 22.77% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 9.90% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 8.91% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 4.95% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.95% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 3.96% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.96% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 2.97% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 2.97% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.97% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 1.98% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 1.98% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.98% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.98% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.99% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.99% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.99% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.99% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.99% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.99% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 0.99% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.99% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.99% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.99% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.99% |
| Termite Gut | Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut | 0.99% |
| Roots | Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.99% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001408 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009665 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 | Environmental | Open in IMG/M |
| 3300009698 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG | Environmental | Open in IMG/M |
| 3300009764 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40 | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010049 | Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3 | Host-Associated | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
| 3300012198 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014199 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG | Environmental | Open in IMG/M |
| 3300014495 | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300017926 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300018012 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5 | Environmental | Open in IMG/M |
| 3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
| 3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
| 3300018046 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 | Environmental | Open in IMG/M |
| 3300020150 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300024123 | Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5 | Host-Associated | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027517 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027842 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027854 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300028742 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3 | Environmental | Open in IMG/M |
| 3300028773 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2 | Environmental | Open in IMG/M |
| 3300028780 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300030043 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300030058 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031713 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031764 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032010 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI10216J12902_1113491192 | 3300000956 | Soil | MNPAVIAAIIAASVSVLTLIGTLVAQFYGIRKTSSDTEKTLKSQSEQLDRTLA |
| JGI20206J14855_10260093 | 3300001408 | Arctic Peat Soil | MNSAVVAAIIAASVSAITLIGTLAAQLYSIRKTSSDTAKTREQQEHQLDRTLAEQREQLDRTLTEQSKQLNR |
| Ga0062387_1011114181 | 3300004091 | Bog Forest Soil | MSPQVTAAIIAAGGVVLTVIATVVVQISGRRATSRDTQKALEEQRRQLDR |
| Ga0062389_1027600072 | 3300004092 | Bog Forest Soil | MSPQVTAAIIAAGGVVLTVIATVVVQISGRRATSRDTQKALEEQRRQLDRTLAEQRTRTLNERF |
| Ga0062386_1011445391 | 3300004152 | Bog Forest Soil | MSPQVTAAIIAAGGVVLTVIATVAVQISGRRATSRDTQKALEEQGKQL |
| Ga0066388_1006201602 | 3300005332 | Tropical Forest Soil | MDPTVVAASIAAGVSVLTLVGTLAAQYLSHRATSRDAEKTAEEQRKQLDRTLAEQNQHLDRTFAEQNQHLDRTLAEQRTRTLNERFATAAGQ |
| Ga0070660_1017632372 | 3300005339 | Corn Rhizosphere | MEPAVVAAMIAAGVSVLTLIGTLAAQYFGRRATSRDTEKALDRTLTEQRTRTLNERFATAADKLGDD |
| Ga0070714_1003889253 | 3300005435 | Agricultural Soil | MDPTVVAAVIAAGVSALTLFGTLVAQYYGRRATKEDTEKAFAEQREQLDRTLAEQRTRTLNERFATAAEQLGSEKPAVRLA |
| Ga0070711_1000857911 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VNSAVVAAVIAASVSLLTLIGTLAAQYLARRATSRELGRTLAEQRTRTLNERFATA |
| Ga0070706_1003799163 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MSPQVTAAVIAAGVGVLTVIATVAVQISGRRATSRDTQQAFEEQ |
| Ga0070734_106170461 | 3300005533 | Surface Soil | MSPEVTAAIIAASVSFLTLIGTLAAQYFGRRATKQDTKEAFKEQREQLDETLAAQGKQLDRTL |
| Ga0070733_100713392 | 3300005541 | Surface Soil | MSPEVIAAIIAASVSFLTLIGQFLGRRATSRQLDRTLDEQRTRTLNERFATAAEELGSD* |
| Ga0070732_102875281 | 3300005542 | Surface Soil | MSPQVTAPIIAASVSFLTLIGTLAAQYFGRRATSRDTQKTFAEQHEQLDRTLAAQGKQLKRTLAEQRIRT* |
| Ga0070761_107888292 | 3300005591 | Soil | MSPEVTAAIIAASVGVLTLVGTLAAQYFGRRATSRDTRQALEEQHKQLDRTLAEQRTRTLNERFAAAAEQLGS |
| Ga0075014_1008027703 | 3300006174 | Watersheds | MSPEVTAAIIAASVSFLTLIGTLAAQYYGRHAASRDAVKSFAEQREQLNETLKAQ |
| Ga0075426_106091061 | 3300006903 | Populus Rhizosphere | MNPQVTAAWIAAGLSAATLIGTLLTAYFNRKQLDRTLAEQRLQT |
| Ga0079219_113871351 | 3300006954 | Agricultural Soil | MDPTVVAAWIACLTLVGTLAAQYLGYRAAGRDAAKIAEEQRKQLDRTLAEQRTRTLTNGSPRPLSSWAAISQLRGL |
| Ga0075435_1005695701 | 3300007076 | Populus Rhizosphere | MEPAVVAAMIAAGVSVLTLIGTLAAQYFGRRATSRDTEKALDRTLTEQRTRTL |
| Ga0105247_104839451 | 3300009101 | Switchgrass Rhizosphere | MEPAVVAAMIAAGVSVLTLIGTLAAQYFGRRATSGDTEKALDRTLAEQRKELDRTLAEQRTRTLNERFA |
| Ga0116135_12295882 | 3300009665 | Peatland | MDPTVVAAVIAAAVSVLTLVGTLAAQYVGRRATSRDTKETLKQQREQLDLTLAEQSKQLDRTL |
| Ga0116216_102124101 | 3300009698 | Peatlands Soil | MSPEVTAAIIAASVSVLTLIGTLAAQYFGRRATSRDTQEALEEQRKQLD |
| Ga0116134_10872053 | 3300009764 | Peatland | MAQRASLPHVDPTVVAAIIAGALTVIGTLAAQYFGGRATQKTLKNQGEQLDKTLEEQRTRTL |
| Ga0126373_127243911 | 3300010048 | Tropical Forest Soil | MDPTVVAASIAAGVSVLTLVGTLVAQYLSHRATSRDAEKTAEEQRRQLDRALAEQNQHLDRTFAEQNQHLDRTLAEQRTRTLNERFATAAEQLGS |
| Ga0123356_123755442 | 3300010049 | Termite Gut | MDPTVVAAWIAAGVSVLTLAGTLVAQYLGYRATSRDAERTARAQSEQLDLTLAEQNQQLDRTLAEQRTRTLNERFAS |
| Ga0126372_110698451 | 3300010360 | Tropical Forest Soil | MGPQVVAAIIAASVSFLTLIGTLVAQYLGRRATSRDTQKTLEQQREQLDRTLTEQREQLDRTLTEQR |
| Ga0126378_128979191 | 3300010361 | Tropical Forest Soil | MSPEVTAAIIAGALTLIGTLAAQYFGRRATKRDLEEQRKQLDRTLAEQRTQTLNDASPRQLSNWAVKSQLSG* |
| Ga0126379_116540872 | 3300010366 | Tropical Forest Soil | MDPTVVAAWIAAGVSVLTLLGTLVAQYLGYRATSRDAEKTAEEQRGQMDRTLTGQREQLDRTLAEQSQQLDRTLAE |
| Ga0134128_120497162 | 3300010373 | Terrestrial Soil | MSPQVTAAIIAVGGVVLTVIATVAVQISGRRATSRDTQKTLAEQRTQL |
| Ga0137392_106760991 | 3300011269 | Vadose Zone Soil | TAAIIAAGVGVLTLMGTLAAQHLGRRDTRKALDEQRKQLDRTLSEQSARSLNERFATAAEQLVLQP* |
| Ga0137364_102703052 | 3300012198 | Vadose Zone Soil | MSPQVEAAIIAASVGVLTVIATVVTQYLGRRATSRDTEKTLEQQGKHLDRTLAEQRQQL |
| Ga0164302_118340223 | 3300012961 | Soil | MSPAVVAAIIAASVSALTLMGTLAVQLYSIRKTSSDTETTLKEQNQQLDRTLAEQREQLD |
| Ga0181523_101068584 | 3300014165 | Bog | MNSQVVAAFIAASVSVLTLIGTLAAQYFGRRDFGRRATSRDTEKTLGEQGKQLDRTLAEQ |
| Ga0181535_106026342 | 3300014199 | Bog | MNPQVVAAFIAASVSVLTLIGTLAAQYFGRRATSRDTEKTLGEQGKHLDRTLAEQREQLDRTLAEQ |
| Ga0182015_103050882 | 3300014495 | Palsa | MNPQVVAATIAASVSVLTLIGTLAAQYFGRRATSRDTEKTLGEQGKHLDRTLAEQREQLDRTLAEQRE |
| Ga0182024_101373151 | 3300014501 | Permafrost | VDPTVVAAIIAAAVSGLTLVGTLAAQYFGRRGTKEDTEKAFAEQRAQLNETLK |
| Ga0157379_105426521 | 3300014968 | Switchgrass Rhizosphere | MDPTVVAAWIAAGVSVLTLVGTLAAQYLGYRAADRDAAKIAEEQRKQLDRTLAEQ |
| Ga0182034_115883991 | 3300016371 | Soil | MSPEVTAAIIAAGVSFLTLIGTLAAQYFGRRATSKQLDRTLAEQRTRTLNERFATAAEQ |
| Ga0182037_108872611 | 3300016404 | Soil | MSPTVTAAIIAASVGVITVIATVVTQYLGRRATSRDTQKALEAQRVQLDRTLAEQRTRTLNERFATAAEQLGSDKPAVR |
| Ga0182037_115928471 | 3300016404 | Soil | MSPEVTAAIIAASVSFVTLLGTLAAQYFGRRATSEQLDRTFAEQRTRALNERFATAA |
| Ga0187807_13420501 | 3300017926 | Freshwater Sediment | MSPQVTAAIIAASVSFLTLIGTLAPQYVGRRATKQDTKEAFKEQHEQLGETLAAQSDQL |
| Ga0187814_102965571 | 3300017932 | Freshwater Sediment | MNSQVVAAFIAASVSVLTLIGTLAAQYFGRRATSRDTEKTLGEQGKHLDRTLAEQREQLDRT |
| Ga0187810_102819222 | 3300018012 | Freshwater Sediment | MSPELVAAIIAASVSVLTLIGSVAAQIYGIRKTSRDTEKTLKEQREQLDKTLREQSKQLD |
| Ga0187871_100167209 | 3300018042 | Peatland | MNPTVVAAIIAAAVSVLTLVGTLAAQYLGRRATSRDTKETLEQQREQLDLTLA |
| Ga0187871_102510761 | 3300018042 | Peatland | MNPQVVAAIIAASVSALTLIGTLAAQYFGRRATSRDTEKTLGEQGKHLDRTLAEQREQLDRT |
| Ga0187871_108823001 | 3300018042 | Peatland | MDPTVVAAWIAAGVSVLTLLGTLAAQYFGRLATGRDAQKTAREQRRQLDITLKEQRQHLDRTLEAQNQQLDRTPGRAA |
| Ga0187887_106661491 | 3300018043 | Peatland | MDPTVVAAWIAAGVSVLTLVGTLIAQYLGYRAGSRDAEKTAEEQRKQLDRTLAEQRAQLDRTFAEQRDQLDRTLSE |
| Ga0187851_102773321 | 3300018046 | Peatland | MNPQVVAAIIAASVSALTLIGTLAAQYFGRRATSRDTEKTLGEQGKQLDRTLAEQR |
| Ga0187768_11378742 | 3300020150 | Tropical Peatland | MSPQVIAAIIAAGVGVVTVVATVAVQISGRRATSRDTQKALEEQRKQLDRTLAEQRTRTLNERFATAAGQLGSDKPPAVRL |
| Ga0210399_113958921 | 3300020581 | Soil | MSPQVTAAIIAVGGVVLTVIATVAVQISGRRATSRDTQKTLAEQRTQLNTTLTEQRKQLDRTLAEQRTRTLNERF |
| Ga0210405_102670021 | 3300021171 | Soil | MSPEVTAAIIAASVSFLTLIGTLAAQYYGRHAASRDAVKSFAEQREQLNE |
| Ga0210408_100189278 | 3300021178 | Soil | MSPQVTAAVIAASVGVLTVIATVAVQISGRRATSRDTQQAFKEQREQLNRTLAAQREQLDRTLAEQRTRT |
| Ga0210389_111282081 | 3300021404 | Soil | MVVAAWIAAGVSVLTFVGTLTAQYLGYRATSRDAEKTGEEQRKQLDRTLAEQNQ |
| Ga0210386_118016011 | 3300021406 | Soil | MDPTVVAAWIAAGVSALTLAGTLAAQYYGYRATSRDAEKTGEEQRKQLDRTLAEQNQQLDRTLAEQRDQRT |
| Ga0210394_102201073 | 3300021420 | Soil | MDPTVVAAWIAAGVSVLTLVGTLAAQYFGYRAASRDAEKTAEEQRQQAAEQRAYLDRTLKEQRTTSLNER |
| Ga0210384_100821573 | 3300021432 | Soil | MSPQVTAAVIAASVGVLTVIATVAVQISGRRATSRDTQKALEEQRKQLDRTLAEQRTRT |
| Ga0210390_111156042 | 3300021474 | Soil | MDPTVAAAWIAAGVSVLTLAVSMAVQYRGYRATSKDTEKTLKEQREHLELTLAEQGEHLDRT |
| Ga0210409_116671841 | 3300021559 | Soil | MSPQVTAAWIAAGGVFLTVIATVVVQITGRRLTSRDTKQALEEQREQLKTTLAAQRKQLDDTLAEQRTRTLNER |
| Ga0126371_112665863 | 3300021560 | Tropical Forest Soil | MNATVVAAIIAASVSALTLIGTLIAQYVGRRATSRELDRTFTEQRIRTLNERFATAAD |
| Ga0228600_10197651 | 3300024123 | Roots | MDPTVVAAWIAAGVSVLTLAGTLAAQYFGYHATSRDAEKTAEEQRKQLDQTLAEQREQLDKTLKAQ |
| Ga0207693_111850271 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VAAVIAASVSLLTLIGTLAAQYLARRATSRELGRTLAEQRTRTLNERFA |
| Ga0207663_101717591 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | VNSAVVAAVIAASVSLLTLIGTLAAQYLARRATSRELGRTLAEQRTRTLNERFATAADKL |
| Ga0209113_10226732 | 3300027517 | Forest Soil | MSPEVAAAIIAASVSLLTLLGTLAAQYFGRRATSQDTQKALEEQREQLKQTLDEQRGRTLNERFATAAGQLGNDRPPAVRLAGV |
| Ga0209580_103268841 | 3300027842 | Surface Soil | MSPQVTAPIIAASVSFLTLIGTLAAQYFGRRATSRDTQKTFAEQHEQLDRTLAAQGKQLKRTLAEQRIRT |
| Ga0209517_105663881 | 3300027854 | Peatlands Soil | MDPTVVAAWIAAGVSALTLAGTLAAQYLGYRATSRDAEKTAEKAEKTAEEQRKQLDRTLAEQRDQLDRTLKAQSDQLD |
| Ga0209415_106800562 | 3300027905 | Peatlands Soil | MSPEVTAAIIAASVSFLTLIGTLAAQLLGRRATKQDTEEAFKEQREQLDETLAAQ |
| Ga0302220_102699602 | 3300028742 | Palsa | MSPEVTAAIIAASVSFLTLIGTLAAQYFGRRATSRDTQKSFAEQHEQLDK |
| Ga0302234_102797471 | 3300028773 | Palsa | MSPQVTAAVIAVSGVVLTVIATVAVQISGRRATSRDTQKALEEQ |
| Ga0302225_100740481 | 3300028780 | Palsa | MSPQVTAAVIAVSGVVLTVIATVAVQISGRRATSRDTQKALEEQRKQLDRTLAEQRTRTLNERFATAAGRLGSDK |
| Ga0302306_103079342 | 3300030043 | Palsa | MSPEVTAAIIAASVSFLTLIGTLAAQYFGRRATSRDTQKSFAEQHEQLDKTLAAQGEQLDRTLAEQRTRT |
| Ga0302179_103435021 | 3300030058 | Palsa | MSPEVTAAIIAASVSFLTLIGTLAAQYFGRRATSRDTQKSFAEQHEQLEKTLE |
| Ga0311357_107798152 | 3300030524 | Palsa | MDPTVVAAWIAAGVSVLTLAGTLAAQYVGYHASSRDAEKTAEEQRKQLDRTLAEQNQQLDRTLAE |
| Ga0311355_101240091 | 3300030580 | Palsa | MDPTVVAAWIAAGVSVLTLMGTLAAQYFGRRGTKEDAEKAFAEQRDQLNETLKAQSEHLDRTLDDQRTR |
| Ga0302324_1021743522 | 3300031236 | Palsa | MNPTVVAAVIAAAVSVLTLVGTLAAQYLGRRATSRDTKETLEQQREQLDLTLA |
| Ga0302326_107414153 | 3300031525 | Palsa | MDPTVVAAVIAAAVSGLTLVGTLAAQYLGRRATSRDTKETLEQQREQLDLTLAEQSKQLDRTLAEQSKQLDLTL |
| Ga0318534_106899282 | 3300031544 | Soil | MSPQVVAAIIAGALTVIGTLAAQYFGRRATRRDIQEQGKQLDRTLAEQRTRTLNERFA |
| Ga0318496_105175231 | 3300031713 | Soil | MSPEVTAAIIAASVSFVTLLGTLAAQYFGRRATSEQLDRTFAEQR |
| Ga0307474_115232471 | 3300031718 | Hardwood Forest Soil | MAPQITAAIIAVSGVVLTVIATVAVQISGRRRTSRDTQ |
| Ga0318493_106602511 | 3300031723 | Soil | MSPQVVAAIIAGALTVIGTLAAQYFGRRATRRDIQEQGKQLDRTLAEQ |
| Ga0318502_101710621 | 3300031747 | Soil | MSPQVTAAIIAASVGVVTLIGTLAAQYFGRRATSRDTQQALEEQRKQLDRTLAEQRTRTL |
| Ga0318492_106152451 | 3300031748 | Soil | MSPQVTAAIIAASVGVVTLIGTLAAQYFGRRATSRDTQQALEEQRKQLDRTLAEQCTRTLNGRFATAAGQLGSDKPQ |
| Ga0318535_104973381 | 3300031764 | Soil | MSPQVEAALIAAGVGVLTVITTAFTQYLGRRATSKQLDRTLAEQSLRTLNERFATSA |
| Ga0318552_103433173 | 3300031782 | Soil | MSPQVVAAIIAGALTVIGTLAAQYFGRRATSRDTQKALEEQGKQLDRTLAE |
| Ga0318523_103703412 | 3300031798 | Soil | MSPQVTAAIIAASVGVVTLIGTLAAQYFGRRATSRDTQQALEEQRKQLDRTLAEQRTRTLNGRFATAAGQLGSDKPQ |
| Ga0318568_103309601 | 3300031819 | Soil | MSPTVTAAIIAASVGVITVIATVVTQYLGRRATSRDTQKALEAQRVQL |
| Ga0318495_103206171 | 3300031860 | Soil | MNPQVTAAIIAAIVSGLTLIGTLAAQYFGRRATSKQLDRTLAEQRHGGRATGR |
| Ga0318495_105434612 | 3300031860 | Soil | VPFMSPQVTAAIIAASVGVLTLIGTLAVQISSRRATSEQLDRTFAEQRTGR |
| Ga0318520_107831762 | 3300031897 | Soil | MSPEVTAAIIAAGGVVLTVIATVAVQISGRRTTSQDTQKAFKEQREQL |
| Ga0310916_107077751 | 3300031942 | Soil | MSPTVTAAIIAASVGVITVIATVVTQYLGRRATSRDTQKALEAQRVQLDRTLAE |
| Ga0306926_114488611 | 3300031954 | Soil | MSPQVTAAIIAVSGVVLTVIATVVVQISGRRATSRDTQRALEEQRKQLDRTLAEQRIRTPNERFAAAAG |
| Ga0306926_130268421 | 3300031954 | Soil | MSPQIEAAIIAASVGVLTLIATVVTQYLGRRATSRDTRTTLDRTLKAQRKQLRKT |
| Ga0318569_103377122 | 3300032010 | Soil | MSPEVTAAIIAGSVGVLTLIGTLAAQYLGRRATSRDTQEALEDQRKQLDRTLASSGPGP |
| Ga0335085_101631816 | 3300032770 | Soil | MSPQIEAAIIAASVGVLTLIATVVTQYLGRRATSRETKTTLDRTLKAQRKQLRKTLKAQS |
| Ga0335085_106300343 | 3300032770 | Soil | MSPEITAAIIAAGVGVLTVAATVAVQISGRRATSRDTQKAFKEQREQLNTTLAAQREQLDRTL |
| Ga0335078_113216781 | 3300032805 | Soil | MNPQVTAAIIAVCGVVLTVIATVAVQVSGRRATGRDTERALKEQSKQLDRTLAEQRERTL |
| Ga0335080_118141473 | 3300032828 | Soil | MSPEVTAAIIAASVSFLTLIGTLAAQYFGRRATSRDTQKALEAQGRQLDRTLAEQRTRTLNERFATAAGQ |
| Ga0335069_121561581 | 3300032893 | Soil | MSPEVTAAIIAASVSFLTLIGTLAAQYFGRRATSRDTQKALEAQGKQLDRTLAEQRTRTLNE |
| Ga0335069_124479941 | 3300032893 | Soil | MSSTVAAAIIAASVSFLTLIGTLAAQYLARRATRRDLEEQREQLDRTLAVQSTRA |
| Ga0335075_110884092 | 3300032896 | Soil | MDPTVVAAWIAAGVSVMTLAGTLAAQYFGYRATSRDAERTASKAAEDQRKQLDRTFAEQRDQLDRTLAEQSQQLDRTLAEQRTR |
| Ga0335072_115128051 | 3300032898 | Soil | MDPTVGAAWIAAGVSVLTLAGTLAAQYFGYRATSRDAEKTASKAAEDQRKQLDRTLAEQRDHLDRTLAEQNQQLDRTLAEQR |
| Ga0335083_107062761 | 3300032954 | Soil | MSPAVTAAVIAASVGVLTLIGTLAAQYFGRRATSRDSQRAFEEQRNQLDRTLAEQRIRTLNERFAMAA |
| Ga0335077_112411941 | 3300033158 | Soil | MSPQVIAAIIAAGVGVLTVAATVAVQISGRRATSRDTQKALEEQRKQLDRT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |