Metagenome / Metatranscriptome Family F103665

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103665
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	82 residues
Representative Sequence	VIVLIPIVFLVPAALVFLPPLMPLTPAMLPRIMQFTTLVICLSAVASVFFDCLVEFMFCVSDPALTSVESFCLKARHCGAKQNRCEND
Number of Associated Samples	68
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.21 %
% of genes near scaffold ends (potentially truncated)	30.69 %
% of genes from short scaffolds (< 2000 bps)	77.23 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.030 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (66.337 % of family members)
Environment Ontology (ENVO)	Unclassified (65.347 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.238 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.62% β-sheet: 0.00% Coil/Unstructured: 41.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01425	Amidase	3.96
PF04185	Phosphoesterase	3.96
PF04226	Transgly_assoc	2.97
PF06348	DUF1059	2.97
PF00072	Response_reg	1.98
PF13426	PAS_9	1.98
PF13532	2OG-FeII_Oxy_2	1.98
PF09411	PagL	0.99
PF10771	DUF2582	0.99
PF01068	DNA_ligase_A_M	0.99
PF01977	UbiD	0.99
PF07883	Cupin_2	0.99
PF01610	DDE_Tnp_ISL3	0.99
PF02153	PDH_N	0.99
PF00313	CSD	0.99
PF13671	AAA_33	0.99
PF06067	DUF932	0.99
PF02541	Ppx-GppA	0.99
PF00665	rve	0.99
PF06983	3-dmu-9_3-mt	0.99
PF01569	PAP2	0.99
PF04357	TamB	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	3.96
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	3.96
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	2.97
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	1.98
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.99
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.99
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.99
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.99
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.99
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.99
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.99
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	0.99
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.99
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.99
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.99
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.03 %
Unclassified	root	N/A	2.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.03 %
Unclassified	root	N/A	2.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.03 %
Unclassified	root	N/A	2.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	90.10 %
Unclassified	root	N/A	2.97 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.82 %
Unclassified	root	N/A	2.97 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.82 %
Unclassified	root	N/A	2.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.82 %
Unclassified	root	N/A	2.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10041356	Not Available	934	Open in IMG/M
3300004152\|Ga0062386_100394291	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300005175\|Ga0066673_10458372	All Organisms → cellular organisms → Bacteria → Acidobacteria	750	Open in IMG/M
3300005434\|Ga0070709_11575417	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300005439\|Ga0070711_100046700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2952	Open in IMG/M
3300005467\|Ga0070706_100046523	All Organisms → cellular organisms → Bacteria	4005	Open in IMG/M
3300005468\|Ga0070707_100064456	All Organisms → cellular organisms → Bacteria	3518	Open in IMG/M
3300005471\|Ga0070698_101176642	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300005518\|Ga0070699_100035351	All Organisms → cellular organisms → Bacteria	4319	Open in IMG/M
3300006175\|Ga0070712_100611895	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300006904\|Ga0075424_101578544	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300007258\|Ga0099793_10728561	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300007265\|Ga0099794_10740624	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300009038\|Ga0099829_10016153	All Organisms → cellular organisms → Bacteria	4999	Open in IMG/M
3300009038\|Ga0099829_10086571	All Organisms → cellular organisms → Bacteria → Acidobacteria	2411	Open in IMG/M
3300009038\|Ga0099829_10233844	All Organisms → cellular organisms → Bacteria → Acidobacteria	1495	Open in IMG/M
3300009038\|Ga0099829_10849612	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300009088\|Ga0099830_10089821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2272	Open in IMG/M
3300009088\|Ga0099830_10096195	All Organisms → cellular organisms → Bacteria → Acidobacteria	2202	Open in IMG/M
3300009088\|Ga0099830_10764943	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300009089\|Ga0099828_10536541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1054	Open in IMG/M
3300009090\|Ga0099827_10259353	All Organisms → cellular organisms → Bacteria → Acidobacteria	1463	Open in IMG/M
3300009090\|Ga0099827_11559405	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300009101\|Ga0105247_10253695	All Organisms → cellular organisms → Bacteria → Acidobacteria	1203	Open in IMG/M
3300009137\|Ga0066709_100988052	All Organisms → cellular organisms → Bacteria → Acidobacteria	1232	Open in IMG/M
3300009143\|Ga0099792_10709402	All Organisms → cellular organisms → Bacteria → Acidobacteria	651	Open in IMG/M
3300010159\|Ga0099796_10556893	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300010371\|Ga0134125_12789039	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300010373\|Ga0134128_10028090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6630	Open in IMG/M
3300011120\|Ga0150983_13916304	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300011120\|Ga0150983_14057417	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300011269\|Ga0137392_10102072	All Organisms → cellular organisms → Bacteria → Acidobacteria	2263	Open in IMG/M
3300011269\|Ga0137392_10739621	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300011270\|Ga0137391_10060841	All Organisms → cellular organisms → Bacteria → Acidobacteria	3232	Open in IMG/M
3300011271\|Ga0137393_10047392	All Organisms → cellular organisms → Bacteria → Acidobacteria	3348	Open in IMG/M
3300011271\|Ga0137393_11392924	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300011271\|Ga0137393_11762819	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300012096\|Ga0137389_10007050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7297	Open in IMG/M
3300012096\|Ga0137389_10065120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2800	Open in IMG/M
3300012096\|Ga0137389_10464276	All Organisms → cellular organisms → Bacteria → Acidobacteria	1085	Open in IMG/M
3300012096\|Ga0137389_10608700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300012189\|Ga0137388_11246917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300012189\|Ga0137388_11251003	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300012200\|Ga0137382_11219615	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300012203\|Ga0137399_11587782	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300012205\|Ga0137362_10341737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1296	Open in IMG/M
3300012205\|Ga0137362_11098280	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300012206\|Ga0137380_10000865	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	23467	Open in IMG/M
3300012207\|Ga0137381_11552495	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300012207\|Ga0137381_11607080	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300012210\|Ga0137378_10000206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	40282	Open in IMG/M
3300012210\|Ga0137378_10453310	All Organisms → cellular organisms → Bacteria → Acidobacteria	1188	Open in IMG/M
3300012211\|Ga0137377_11424876	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300012349\|Ga0137387_10617946	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300012361\|Ga0137360_10998514	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300012362\|Ga0137361_10259767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1583	Open in IMG/M
3300012362\|Ga0137361_10530028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300012362\|Ga0137361_11594191	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300012363\|Ga0137390_10379141	All Organisms → cellular organisms → Bacteria → Acidobacteria	1394	Open in IMG/M
3300012363\|Ga0137390_10965866	All Organisms → cellular organisms → Bacteria → Acidobacteria	805	Open in IMG/M
3300012363\|Ga0137390_12016710	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300012582\|Ga0137358_10096151	All Organisms → cellular organisms → Bacteria	2003	Open in IMG/M
3300012582\|Ga0137358_10128746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1721	Open in IMG/M
3300012582\|Ga0137358_10202586	All Organisms → cellular organisms → Bacteria → Acidobacteria	1354	Open in IMG/M
3300012683\|Ga0137398_10365522	All Organisms → cellular organisms → Bacteria → Acidobacteria	978	Open in IMG/M
3300012917\|Ga0137395_10044911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2750	Open in IMG/M
3300012922\|Ga0137394_10683647	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300012923\|Ga0137359_10259615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1549	Open in IMG/M
3300012924\|Ga0137413_10715588	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300012925\|Ga0137419_11841851	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300012927\|Ga0137416_10161551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1764	Open in IMG/M
3300012929\|Ga0137404_10299278	All Organisms → cellular organisms → Bacteria → Acidobacteria	1395	Open in IMG/M
3300012929\|Ga0137404_10545166	All Organisms → cellular organisms → Bacteria → Acidobacteria	1038	Open in IMG/M
3300012929\|Ga0137404_11774557	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300012929\|Ga0137404_11891616	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300012929\|Ga0137404_11905803	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300012930\|Ga0137407_10107452	All Organisms → cellular organisms → Bacteria → Acidobacteria	2403	Open in IMG/M
3300012930\|Ga0137407_11792423	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012930\|Ga0137407_12028245	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300012984\|Ga0164309_11384035	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300014058\|Ga0120149_1177928	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300015242\|Ga0137412_10444048	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300015245\|Ga0137409_10589661	All Organisms → cellular organisms → Bacteria → Acidobacteria	941	Open in IMG/M
3300015264\|Ga0137403_10004730	All Organisms → cellular organisms → Bacteria → Acidobacteria	15967	Open in IMG/M
3300021088\|Ga0210404_10891144	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300021170\|Ga0210400_10545351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300021171\|Ga0210405_10228371	All Organisms → cellular organisms → Bacteria → Acidobacteria	1474	Open in IMG/M
3300021171\|Ga0210405_10821537	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300021171\|Ga0210405_11271787	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300021418\|Ga0193695_1086647	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300021432\|Ga0210384_10509180	All Organisms → cellular organisms → Bacteria → Acidobacteria	1083	Open in IMG/M
3300021432\|Ga0210384_10907221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300021432\|Ga0210384_11321924	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300022504\|Ga0242642_1010949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1116	Open in IMG/M
3300025915\|Ga0207693_10433541	All Organisms → cellular organisms → Bacteria → Acidobacteria	1027	Open in IMG/M
3300027846\|Ga0209180_10046751	All Organisms → cellular organisms → Bacteria → Acidobacteria	2379	Open in IMG/M
3300027875\|Ga0209283_10291650	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300031740\|Ga0307468_101632080	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300034090\|Ga0326723_0200989	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.02%
Host-Associated	Host-Associated	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.05%
Aquatic	Environmental → Aquatic	2.97%
Plants	Host-Associated → Plants	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.06%
Freshwater	Environmental → Aquatic → Freshwater	2.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.18%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	70.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	66.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100413562	3300001545	Forest Soil	MVVLVPIAFLVPAALMFTPPLMPLTPATLPRIVQLTTLVICPYAMASVFLEPREFMFCVSDSALTSIEGFCLKARHCGAKNRSEND*
JGI26341J46601_1000094710	3300003219	Bog Forest Soil	VIVLVPIAVRVPAVLVFIPPLMPLTPATFSRIVQFTTFVICLSAVASMSINGLVEFMFRVSDSALTPVEVFCMESWHCREKQERRQYGSSEH
Ga0062386_1003942913	3300004152	Bog Forest Soil	VIVLVPIAVRVPAVLVFIPPLMPLTPATFSRIVQFTTFVICLSAVASMSINGLVEFMFRVSDSALTPVEVFC
Ga0066673_104583721	3300005175	Soil	MLVVIVLVPITFLVPAALVFLPPPMLLTPATLPRIMQFTTLVICLSAVTSVFLNCFMEFMVSVSDSALTCVEVFCLKARH*
Ga0070709_115754172	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VFTLVVVVLVPIMFLVPAAAVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFLDCLVEFVFCVSDPALTSVEVFCLKARHCNAKQNPSEND*
Ga0070711_1000467005	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VFTLVVVVLVPIMFLVPAAAVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFHDCLVEFVFCVSNPALTSVEVFCLKARHCRAKHRCEND*
Ga0070706_1000465236	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLVPIAFLVPAVFVFLPPLMPITPATLPRIVQFTTLVICLFAVVSVSLNCLVEVMFCVSDSALTFVEVFCLKARHYGAKQNCGENDQ*
Ga0070707_1000644564	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VIVLVPIAVFVPAVLVFIPPLMPLAPATLPRLVQFTTLVICLFAVASVFLDCFVEFMLGVSDSALTLLLVFCLKPGRGDAK*
Ga0070698_1011766422	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VSTLVVVMLVPIAFLVPAVFVFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVNDPALTSVEGFRLKARHCGAKQNRCEND*
Ga0070699_1000353516	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLVPIAFLVPAVFVFIPPLMPLTPATLPRIVQFTTLVICLFAVVSVSLNCLVEVMFCVSDSALTFVEVFCLKARHYGAKQNCGENDQ*
Ga0070712_1006118951	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VFTLVVVVLVPIMFLVPAAAVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFLDCLVEFVFCVSNPALTSVEVFCLKARHCRAKHRCEND*
Ga0075424_1015785442	3300006904	Populus Rhizosphere	VIVLIPIVFLVPAALVFLPPLMPLTPAMLPRIMQFTTLVICLSAVASVLFDCLVEFMFRVSNSALTFVEVFCLKAR
Ga0099793_107285611	3300007258	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVIRHHAVRSVSSDCLVEFMFCVNDPALTSVEGFRLKARHCGAKQNRCEND*
Ga0099794_107406241	3300007265	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVNDPALTSVEGFRLKARHCGAKQNRCEND*
Ga0099829_100161532	3300009038	Vadose Zone Soil	VVVLVPITFLVPAALVFLPPLMPLMPAMLPRFVQLTTFVVCPLAVASVFFNCRVEFMFCVSDSALTFVEVFCLNSWNCGAK*
Ga0099829_100865712	3300009038	Vadose Zone Soil	MVVLVPIAFLVPAALVFFPPLMPLTPATFPRIVQFPALVICHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEND*
Ga0099829_102338442	3300009038	Vadose Zone Soil	MVVLVPIMFLVPAALVFLPPLMPLTPTMLPRIVQFTTLVIFLSAVASVSLDCLVEFVVCVSDSALTFVEVFCLKARHYGGK*
Ga0099829_108496121	3300009038	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPTLMIGQPALASVSRDCFVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEN
Ga0099830_100898213	3300009088	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEND*
Ga0099830_100961955	3300009088	Vadose Zone Soil	VVVLVPITFLVPSALVFLPPLMPLMPAMLPRFVQLTTFVVCPLAVASVFFNCLVEFMFCVSDSALTFVEVFCLNSWNCGAK*
Ga0099830_107649432	3300009088	Vadose Zone Soil	MVVLVPIAFLVPAVLVFIPPPMALPPATFPRIVQFTTLVICQHAVRSVSLDCLVEFVFCVSDSALTSVEGFCLNARNSGAKHNRCENDQ*
Ga0099828_105365412	3300009089	Vadose Zone Soil	AVGVPAVLVFIPPLIPLTPATLPRAVQFTSLGICLFAVASVFLDCFVEFMLGVSDSALTALLVFGLKPGRGDAK*
Ga0099827_102593532	3300009090	Vadose Zone Soil	VVVLVLVPIAFLVPAALMFIPRLMPLTPATLPRIVQFPALVICDHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEND*
Ga0099827_115594051	3300009090	Vadose Zone Soil	GVGVYLVVVVLVLVPIAFLVPAALMFIPSLMPLTPATLPRIVQFPALLICHHAVRSLSSDCLVEFMFCVNDPALTSVGGFRLKARHCGAKQNRCEND*
Ga0105247_102536953	3300009101	Switchgrass Rhizosphere	VFTLVVVVLVPIMFLVPAAAVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFLDCLVEFVFCVSNPALTSVEVFCLKARHCRAKHNRCEND*
Ga0066709_1009880521	3300009137	Grasslands Soil	RQLRLVVVVLVPIAFLVPAALVFIPPLMPLTPATLPRVMQFPALVICNHAVGSESSDCLVEFMFCVNDPALTSVEGFCLKARHCGGKQNRCENDQ*
Ga0099792_107094021	3300009143	Vadose Zone Soil	MFIPPLMPLTPATLPRIAQFPALVICHHAVRSLSSDCLVEFMFCVNDPALTSVEGFRLKARHCGAKQNRCEND*
Ga0099796_105568931	3300010159	Vadose Zone Soil	VIVLIPIVFLVPAALVFLPPLMPLTPTMLPRIMQFTTLVICLSALASVSLDCLMELIVCVSDSALTFVEVFCLKARHYGGK*
Ga0134125_127890391	3300010371	Terrestrial Soil	LVVIVLIPIVFLVPSALVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFLNCLVEFVLCVSNPALTCVEVFCLKARHCRAKHNRCEND*
Ga0134128_1002809010	3300010373	Terrestrial Soil	FFQIRKNRARNGRIGAPEASVFTLVVVVPIMFLVPAAAVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFLDCLVEFVFCVSNPALTSVEVFCLKARHCRAKHRCEND*
Ga0150983_139163041	3300011120	Forest Soil	VVVLVPITIRVPAVLVFIPPLVPLTPATLPRIMQFTTLVICLSAMASVFLDCLVEFVLRTSDSALTSVLVFRLKARRCGAKQKHCESG*
Ga0150983_140574172	3300011120	Forest Soil	VVVLVPIAFRVPAVLMFIPPLMPLTPAPLPRIMQFSTLVICPLAVASVFLDCFVEFMFRVYNSPLTPVAVFRLNTRHSRKEQNRCEKG*
Ga0137392_101020723	3300011269	Vadose Zone Soil	MVVLVPIAFLVPAALVFFPPLMPLTPATFPRIVQFPALVICHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAK
Ga0137392_107396212	3300011269	Vadose Zone Soil	VIVLIPIVFLVPAALVFLPPLMPLTPAMLPRTMQFTTLVICLSAVASVLLNCFVEFMFCVGDSALTLVEVFCLKARHYGGK*
Ga0137391_100608413	3300011270	Vadose Zone Soil	VIVLVPIAVFVPAVLVFIPPLMPLAPATLPRLVQFTTLVICLFAVASVFLDCFVEFMLGVSDSALTALLVFGLKPGRGDAK*
Ga0137393_100473924	3300011271	Vadose Zone Soil	VIVLVPIVFLVPAALVFLPPLMPLTPAMLPRTMQFTTLVICLSAVASVFFDCLVEFMFCVSDSALTFVEVFCLNSWNCGAK*
Ga0137393_113929242	3300011271	Vadose Zone Soil	VVVLVPITFLVPSALVFLPPLMPLMPAMLPRFVQLTTFVVCLLAVASVFFNCRVEFMFCVSDSALTFVEVFCLNSWNCGAK*
Ga0137393_117628192	3300011271	Vadose Zone Soil	VPAVLVFIPPLMPLTPATLPRAVQFTSLVICLLAVASVFVDCLVQFMLRVSDPPLTAVLVFGLKARRYGGK*
Ga0137389_100070507	3300012096	Vadose Zone Soil	VVVLVPITFLVPSALVFLPPLMPLMPAMLPRFVQLTTFVVCLLAVASVFFNCLVEFMFCVSDSALTFVEVFCLNSWNCGAK*
Ga0137389_100651201	3300012096	Vadose Zone Soil	MFIPSLMPLTPATLPRIVQFPALVIRHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCL
Ga0137389_104642762	3300012096	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVNDPALTSVGGFRLKARHCGAKQNRCEND*
Ga0137389_106087002	3300012096	Vadose Zone Soil	VVVLVPIPIRVPAVLVFIPPLMPLTPATLPRAVQFTSLVICLFAVASVFVDCLVQFMLRVSDPPLTAVLVFGLKARRYGGK*
Ga0137388_112469172	3300012189	Vadose Zone Soil	MFIPRLMPLTPATLPRIVQFPALVIRHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAK
Ga0137388_112510031	3300012189	Vadose Zone Soil	MFTPPLMPLTPATLPRIVQLPALVICHHAVRSVSSDCLVEFMFCVNDPALTSVEGFRLKARHCGIKQNRCENDQ*
Ga0137382_112196152	3300012200	Vadose Zone Soil	PIMFLVPTACVFLPPLMPLMPAMLPSFIQLTTLVVCLLTVASVFLHCLVEFMFCVSDSALTCVEVFCLKVRHCGGK*
Ga0137399_115877822	3300012203	Vadose Zone Soil	MVVVIPIMFLVPAARVFLPPLMPLMPAMRPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVEVFCLKARHCDGK*
Ga0137362_103417372	3300012205	Vadose Zone Soil	MFIPRLMPLTPATLPRIVQFPALVIRHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEND*
Ga0137362_110982802	3300012205	Vadose Zone Soil	MVVVVPIMFLVPAARVFLPPLMPLMPAMLPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTSIEVFCLKARHCSAKQNRREND*
Ga0137380_1000086521	3300012206	Vadose Zone Soil	VVVLVPIAVGVPAVRVFIPPLMPLTPATLPRAVQFTSLVICLFAVASVFVDCLVQFMLRVSDPPLTAVLVFGLKARRYGGK*
Ga0137381_115524951	3300012207	Vadose Zone Soil	VPAAIVFFPPLMPLTPAMFPRMVQFTTLVICLSAVASMSLDCLVEFMFCVSDSALTSIEVFCLKARHCSAKQNRREND*
Ga0137381_116070802	3300012207	Vadose Zone Soil	VPAVLVFIPPLMPLAPATLPRLVQFTTFVICLFAVAPVFLDCFVEFMLGVSDSALTALLVFGLKPGRGDAK*
Ga0137378_1000020613	3300012210	Vadose Zone Soil	VLVLVPIAFRAPAVLVLIPPLMALAPATLPRIVQFTTLVICLFAVASMFVDCFVEFTLRVSDSALTSVLIFCMKPWRGGGK*
Ga0137378_104533101	3300012210	Vadose Zone Soil	MVVLVPIVFLVPAALVFLPPLMPPTPATLPRIVQFTALVICLSAMASVFVNRLVEFMLCVSDSALTFAEVFCLKARH*
Ga0137377_114248762	3300012211	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAK*
Ga0137387_106179461	3300012349	Vadose Zone Soil	LVMVVLVPIAFLVPSALMFIPPLMPLTPATLPRIVQFPTLMIGQPALASVSRDCFVEFMFCVSDSALTSIEVFCLKARHCGTKQNRCQND*
Ga0137360_109985141	3300012361	Vadose Zone Soil	MFIPRLMPLTPAMLPRIMQFTTLMVCLSAVASVSLDCLMEFMFCVSDPALTSVEGFCLKARLCGI*
Ga0137361_102597671	3300012362	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVNDPALTSVEGFRLKARHCGIKQNRCENDQ*
Ga0137361_105300282	3300012362	Vadose Zone Soil	ADRLAAHGSGVPEASTLVMFVLVPIVFLVPAALVFLPPLMPLTPAMLPRTMQFTTLVICLSAVASVFFDCLVEFMFCVSDSALTFGEVFCLKARHYGGK*
Ga0137361_115941911	3300012362	Vadose Zone Soil	VFVPAVLVFIPPLMPLAPATLPRLVQFTTFVICLFAVAPVFLDCFVEFMLGVSDPALTSVLIFGLGLRHRGAE*
Ga0137390_103791411	3300012363	Vadose Zone Soil	ALMFIPPLMPLTPATLPRIVQFPALVICHHAVRSLSSDCLVEFMFCVNDPALTSVGGFRLKARHCGAKQNRCEND*
Ga0137390_109658661	3300012363	Vadose Zone Soil	VIVLIPIVFLVPAALVFLPPLMPFTPAMLPRIMQFTTLVICLSTVASVSLDCLVEFVVCVSDSALTFVEVFCLKARHYDGK*
Ga0137390_120167101	3300012363	Vadose Zone Soil	VFFPPLMSLAPATLPRIVQFTTLVICLSAVVSVFLDCLVEFMFCVSDSPLTSVEVFRLKARHWDAKQKPSEND*
Ga0137358_100961515	3300012582	Vadose Zone Soil	MFIPPLMALTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEND*
Ga0137358_101287461	3300012582	Vadose Zone Soil	VVVLVPIVFLVPAALVFLPPLMPLMPAMFPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVQVFCLKARHCDG*
Ga0137358_102025862	3300012582	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVVCHHAVRSVSSDCVVEFMFCVNDPALTSVESFRLKARHCGAKQNRCEND*
Ga0137398_103655223	3300012683	Vadose Zone Soil	MVMVVPIVFLVPAARVFLPPLMPFMPAMLPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVEVLCLKARHCDGK*
Ga0137395_100449114	3300012917	Vadose Zone Soil	MVVVVPIMFLVPAARVFLPPLMPLMPAMLPRFVQLTTLVVCLPAVASVFLHCLVEFMFCLSDSALTCVEVFCLKARQCDGK*
Ga0137394_106836473	3300012922	Vadose Zone Soil	MVVAVPIMFLVPAARVFLPPLMPLMPAMRPCFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVEVFCLKARHCDGK*
Ga0137359_102596152	3300012923	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSLSSDCLVEFMFCVNDPALTSVESFRLKARHCGAKQNRCEND*
Ga0137413_107155882	3300012924	Vadose Zone Soil	MVVIVPMFLVPTACVFLPPLMPFMPAMLPRFAQLTALVICLSAVASVFFDCLVEFMFRVSDPALTSVEVFGLKARHCGAKQNRCENDQ*
Ga0137419_118418511	3300012925	Vadose Zone Soil	MFLVPTACVFLPPLMPLMPAMLPSFIQLTTLVVCLPTVASVFLHCLVEFMFCVSDSALTCVEVFCLKARHYGGK*
Ga0137416_101615513	3300012927	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPALVICHHAVRSVSSDCLVEFMFCVNDPALTSAEGFCLKARHCGAKQNRCEND*
Ga0137404_102992782	3300012929	Vadose Zone Soil	MVVVVPIMFLVPAARVFLPPLMPLMPAMLPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVEVLCLNARHCDGK*
Ga0137404_105451661	3300012929	Vadose Zone Soil	VIVLIPIVFLVPAALVFLPPLMPLTPAMLPRIMQFTTLVICLSAVASVSLDCLMELMVCVSDSALTLVEVFCLKARHCGGK*
Ga0137404_117745571	3300012929	Vadose Zone Soil	MVMLVPIMFRVPAAVVFLPLLMPFMPAMLPRVVQFTTLVICLSAVASVFLDCLVEFVFCVSDPALTSVEVFCLKARHCGAKQNRSEND*
Ga0137404_118916161	3300012929	Vadose Zone Soil	MFLVPTACVFLPPLMPLMPAMLPSFIQLTTLVVCLPTVASVFLHCLVEFMFCVSDSALTCVEVFCLKARHCGGK*
Ga0137404_119058031	3300012929	Vadose Zone Soil	LVPSALMFIPPLMPLTPATLPRIVQFPTLMIGQPALASVSRDCFVEFMFCVSDSTLTSVEGFCLKARHCGAKQNRCEND*
Ga0137407_101074524	3300012930	Vadose Zone Soil	MFIPPLMPLTPATLPRIVQFPTLMIGQPALASVSRDCFVEFMFCVSDSTLTSVEGFCLKARH
Ga0137407_117924231	3300012930	Vadose Zone Soil	MVVVVPIMFLVPAALVFLPPLMPLMPAMLPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVEVLCLKARHCDGK*
Ga0137407_120282451	3300012930	Vadose Zone Soil	FLPPLMPLMPAMLPSFVQLTTLVVCLLTVASVFLHCLVEFMFCVSDSALTCVEVFCLKARHCDGK*
Ga0164309_113840351	3300012984	Soil	VIVLIPIVFLVPAALVFLPPLMPLTPTMLPRIMQFTTLVICLSAVASVSSNCLVEFMVCVNDSALTFVEVFSLKARHYGGK*
Ga0120149_11779282	3300014058	Permafrost	VIVFVPIAVFVPAVLVFIPPLMPLAPATLPRLVQFTTLVICLFAVASMFLDCFVEFMLGVSDSALTAVLVFCLQARHGGAKQKCC*
Ga0137412_104440482	3300015242	Vadose Zone Soil	MVVIVPMFLVPTACVFLPPLMPFMPAMLPRFAQLTALVICLSAVASVFFDCLVEFMFRVSDPALTSVEVFGLKARHCGAKQNRSEND*
Ga0137409_105896612	3300015245	Vadose Zone Soil	VIVLIPIVFLVPAALVFLPPLMPLTPAMLPRIMQFTTLVICLSAVASVFFDCLVEFMFCVSDPALTSVESFCLKARHCGAKQNRCEND*
Ga0137403_1000473011	3300015264	Vadose Zone Soil	MVVVVPIMFLVPAARVFLPPLMPLMPAMLPRFVQLTTLVVCLPAVASVFLHCLVEFMFCVSDSALTCVEVFCLKARH*
Ga0210404_108911441	3300021088	Soil	FGAYRRLERSDASTYLVVVVIVPIVFRAPAVLVFIPPPMPLTPTTFPRLVQFTTLVIRLRAVSSVSLDCLVESMVRVSNSALTLVDTFCLNARHCGAKQNRCEND
Ga0210400_105453512	3300021170	Soil	MVVLVPIAFRVPAALVFIPPPMALSPAMLPRTVQFPALVICHHAVRSVSSDCLVEFMFCVSDPALTSVEGFCLKARHCGAKQKRSKND
Ga0210405_102283712	3300021171	Soil	VVVLVPIAFRAPAVLVFIPPLMPLTPAPLPRIMQFSTLVICPLAVASVFLDCFVEFMFRVYHSPLTPVAVFRLNSGRSRKEQNRCEKG
Ga0210405_108215371	3300021171	Soil	VVVFVPIVFRAPAVLVFIPPSMPLTPATLPRLVQFTTLVIRLFAVPSVPLDCLVEFMVRVSDSALTSVDVFCLKARHCGAKQNSCEND
Ga0210405_112717871	3300021171	Soil	LECSDASTCLVVVVIVPIVFRAPAVLVFIPPPMPLTPTTFPRLVQFTTLVIRLRAVSSVSLDCLVEFMVRVSDSALTLVDTFCLNARHCGAKQNRCEND
Ga0193695_10866472	3300021418	Soil	MVMVVLVPIAFLVPAALVFFPPLMPLTPAMLPCIVQFPALVICLSAMASVSRDCFVEFMFCVSDSALTSVEVFRLKARHCGAKQNRC
Ga0210384_105091803	3300021432	Soil	RLECSDASTCLVVVVIVPIVFRAPAVLVFIPPSMPLTPATLPRLVQLTTLVIRLCAVSSVSLDCLVESMVRVSDSALALVDTFCLNARHCGAKQNRSEND
Ga0210384_109072211	3300021432	Soil	VRVPTVVVFIPPLMPLTPATLPRTVQFTTLVICLFAVAPVSANCFVEFMLRVSNSALTSVLVFCLKARHGGAKQKSCNSE
Ga0210384_113219241	3300021432	Soil	MVVLVPIAFRVPAALVFFPPPMLLTPAPLPHVMQFTTLVVCLPAVASVFLYCLVEFMFRVSDSALTPVEVFCVESWHRREKHNRRHYGSCEH
Ga0213853_105931372	3300021861	Watersheds	VIALVPIAVSVPAVLVFIPPLMLLTPATFSRIVQFTTLVICLFAVASIFLNGLVEFMFRVSDSALTLAEVFCVEAWHRREKQKRRQYGSSEHRCCCGKKFVR
Ga0242642_10109491	3300022504	Soil	VVVLVPIAILVPAVLVFIPPLMPLTPASLPRIMQFSTLVICSLAVASVFLDCLVEFMLRVYNSALAPVAVFRLNTGHSRKEQNG
Ga0207693_104335411	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VFTLVVVVLVPIMFLVPAAAVFLPPLMPFMPAMLPRFAQLTTLVICLSAVASVFLDCLVEFVFCVSNPALTSVEVFCLKARHCRAKHRCEND
Ga0209180_100467512	3300027846	Vadose Zone Soil	VVVLVPITFLVPAALVFLPPLMPLMPAMLPRFVQLTTFVVCPLAVASVFFNCRVEFMFCVSDSALTFVEVFCLNSWNCGAK
Ga0209283_102916502	3300027875	Vadose Zone Soil	MVVLVPIAFLVPAVLVFIPPPMALPPATFPRIVQFTTLVICQHAVRSVSLDCLVEFVFCVSDSALTSVEGFCLNARNSGAKHNRCENDQ
Ga0307468_1016320802	3300031740	Hardwood Forest Soil	KHCLVVIVLIPIVFLVPAALVFLPPLMPLTPATLPRIMQFTTLVICLSAVASVFLNCFVEFMVSVSDSALTFVEVFCLKARHYGGK
Ga0326723_0200989_643_879	3300034090	Peat Soil	VPAVLVFIPPLMPLPPATFPRIVQFTTLVICPVAVASVFLDCLVQFMLRVSYSALTSVEIFCLKARHCGAKQNRCEND

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103665

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences