Metagenome / Metatranscriptome Family F103657

Basic Information
Family ID	F103657
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	47 residues
Representative Sequence	RDDFVVNLAQRYFITPRGHSTPIFETWGLGGLNAGRSETSLRLTYQF
Number of Associated Samples	85
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	96.04 %
% of genes from short scaffolds (< 2000 bps)	92.08 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Most Common Taxonomy
Group	Bacteria (96.040 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.842 % of family members)
Environment Ontology (ENVO)	Unclassified (28.713 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.584 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.00% Coil/Unstructured: 76.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07884	VKOR	42.57
PF01381	HTH_3	4.95
PF04014	MazE_antitoxin	4.95
PF13462	Thioredoxin_4	3.96
PF04892	VanZ	3.96
PF05721	PhyH	2.97
PF12706	Lactamase_B_2	2.97
PF13432	TPR_16	1.98
PF13483	Lactamase_B_3	1.98
PF13414	TPR_11	1.98
PF00590	TP_methylase	0.99
PF04238	DUF420	0.99
PF03477	ATP-cone	0.99
PF11941	DUF3459	0.99
PF02272	DHHA1	0.99
PF00067	p450	0.99
PF01850	PIN	0.99
PF14579	HHH_6	0.99
PF14559	TPR_19	0.99
PF03280	Lipase_chap	0.99
PF07044	DUF1329	0.99
PF01642	MM_CoA_mutase	0.99
PF01925	TauE	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4243	Vitamin K epoxide reductase (VKOR) family protein, predicted involvement in disulfide bond formation	General function prediction only [R]	42.57
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.97
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.99
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	0.99
COG2124	Cytochrome P450	Defense mechanisms [V]	0.99
COG2322	Cytochrome oxidase assembly protein CtaM/YozB, DUF420 family	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG5380	Lipase chaperone LimK	Posttranslational modification, protein turnover, chaperones [O]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.25 %
Unclassified	root	N/A	3.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	73.27 %
Unclassified	root	N/A	3.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	73.27 %
Unclassified	root	N/A	3.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	72.28 %
Unclassified	root	N/A	3.96 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	72.28 %
Unclassified	root	N/A	3.96 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.99 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	72.28 %
Unclassified	root	N/A	3.96 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.99 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	72.28 %
Unclassified	root	N/A	3.96 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.99 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005171\|Ga0066677_10036822	All Organisms → cellular organisms → Bacteria → Proteobacteria	2380	Open in IMG/M
3300005178\|Ga0066688_10348006	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005332\|Ga0066388_105337238	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	652	Open in IMG/M
3300005363\|Ga0008090_15339595	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	512	Open in IMG/M
3300005445\|Ga0070708_100408018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1281	Open in IMG/M
3300005445\|Ga0070708_101434613	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	644	Open in IMG/M
3300005446\|Ga0066686_10819977	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	617	Open in IMG/M
3300005536\|Ga0070697_100924435	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	774	Open in IMG/M
3300005540\|Ga0066697_10655522	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300005545\|Ga0070695_100657331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	828	Open in IMG/M
3300005553\|Ga0066695_10904813	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005561\|Ga0066699_10878409	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	627	Open in IMG/M
3300005719\|Ga0068861_100883587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	845	Open in IMG/M
3300005764\|Ga0066903_102807175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	945	Open in IMG/M
3300005764\|Ga0066903_107361913	Not Available	569	Open in IMG/M
3300005764\|Ga0066903_107385176	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300006175\|Ga0070712_100745506	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300006796\|Ga0066665_10446159	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300006797\|Ga0066659_10411477	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1066	Open in IMG/M
3300006797\|Ga0066659_10652600	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	857	Open in IMG/M
3300006844\|Ga0075428_100922318	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	926	Open in IMG/M
3300006853\|Ga0075420_101019515	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	712	Open in IMG/M
3300006854\|Ga0075425_101825531	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300006854\|Ga0075425_102202836	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	614	Open in IMG/M
3300006865\|Ga0073934_10526509	Not Available	702	Open in IMG/M
3300006871\|Ga0075434_101218815	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	764	Open in IMG/M
3300006903\|Ga0075426_10586296	Not Available	832	Open in IMG/M
3300006904\|Ga0075424_102102754	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	595	Open in IMG/M
3300007258\|Ga0099793_10415038	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300009012\|Ga0066710_100211095	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2774	Open in IMG/M
3300009012\|Ga0066710_101901066	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	891	Open in IMG/M
3300009038\|Ga0099829_11797726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	501	Open in IMG/M
3300009090\|Ga0099827_11930873	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300009094\|Ga0111539_13175756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	530	Open in IMG/M
3300009137\|Ga0066709_101166208	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1134	Open in IMG/M
3300009156\|Ga0111538_12962039	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300009162\|Ga0075423_10183495	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2196	Open in IMG/M
3300009162\|Ga0075423_10569265	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1193	Open in IMG/M
3300009162\|Ga0075423_11428300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741	Open in IMG/M
3300010047\|Ga0126382_12292249	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	522	Open in IMG/M
3300010047\|Ga0126382_12494867	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010303\|Ga0134082_10249594	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010320\|Ga0134109_10043559	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1468	Open in IMG/M
3300010326\|Ga0134065_10124364	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	879	Open in IMG/M
3300010398\|Ga0126383_12939728	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556	Open in IMG/M
3300010399\|Ga0134127_10146505	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2138	Open in IMG/M
3300010401\|Ga0134121_10913592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	854	Open in IMG/M
3300012189\|Ga0137388_11868554	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531	Open in IMG/M
3300012207\|Ga0137381_10210049	All Organisms → cellular organisms → Bacteria	1688	Open in IMG/M
3300012285\|Ga0137370_10906653	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545	Open in IMG/M
3300012357\|Ga0137384_10081143	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2696	Open in IMG/M
3300012363\|Ga0137390_10188770	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2048	Open in IMG/M
3300012685\|Ga0137397_11115969	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012927\|Ga0137416_10822668	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	822	Open in IMG/M
3300012929\|Ga0137404_10065851	All Organisms → cellular organisms → Bacteria	2827	Open in IMG/M
3300012944\|Ga0137410_12097562	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	504	Open in IMG/M
3300013306\|Ga0163162_12338640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	614	Open in IMG/M
3300015241\|Ga0137418_10724414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	758	Open in IMG/M
3300015356\|Ga0134073_10298471	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
3300015358\|Ga0134089_10087258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1182	Open in IMG/M
3300015358\|Ga0134089_10304764	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	662	Open in IMG/M
3300015358\|Ga0134089_10554144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300016422\|Ga0182039_10520826	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1029	Open in IMG/M
3300017659\|Ga0134083_10556912	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300018433\|Ga0066667_10221251	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1410	Open in IMG/M
3300018433\|Ga0066667_11149471	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	673	Open in IMG/M
3300018468\|Ga0066662_10341350	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1283	Open in IMG/M
3300018468\|Ga0066662_11606224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	678	Open in IMG/M
3300018482\|Ga0066669_10042231	All Organisms → cellular organisms → Bacteria	2809	Open in IMG/M
3300018482\|Ga0066669_10925729	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300020170\|Ga0179594_10315398	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300022213\|Ga0224500_10268181	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300025915\|Ga0207693_10658832	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300026075\|Ga0207708_11171043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300026089\|Ga0207648_11330901	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	675	Open in IMG/M
3300026118\|Ga0207675_102526466	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300026118\|Ga0207675_102611961	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
3300026324\|Ga0209470_1354200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300026329\|Ga0209375_1058351	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1885	Open in IMG/M
3300026330\|Ga0209473_1291111	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300026342\|Ga0209057_1195526	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027840\|Ga0209683_10543049	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	530	Open in IMG/M
3300027909\|Ga0209382_10777015	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1022	Open in IMG/M
3300028381\|Ga0268264_12654533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505	Open in IMG/M
3300028536\|Ga0137415_10501510	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1022	Open in IMG/M
3300028536\|Ga0137415_10975053	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	659	Open in IMG/M
3300031368\|Ga0307429_1119728	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300031474\|Ga0170818_104312205	Not Available	1122	Open in IMG/M
3300031572\|Ga0318515_10696152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300031793\|Ga0318548_10595471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300031795\|Ga0318557_10435144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300031854\|Ga0310904_11246257	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	537	Open in IMG/M
3300031858\|Ga0310892_10383560	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	911	Open in IMG/M
3300031949\|Ga0214473_11458974	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	693	Open in IMG/M
3300032089\|Ga0318525_10680983	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300032144\|Ga0315910_10997653	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	653	Open in IMG/M
3300032180\|Ga0307471_102319026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	677	Open in IMG/M
3300032205\|Ga0307472_101779171	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300032275\|Ga0315270_10843422	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	604	Open in IMG/M
3300032397\|Ga0315287_11201257	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	873	Open in IMG/M
3300032829\|Ga0335070_10469549	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1195	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.19%
Host-Associated	Host-Associated	18.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.25%
Plants	Host-Associated → Plants	18.81%
Aquatic	Environmental → Aquatic	5.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.94%
Freshwater	Environmental → Aquatic → Freshwater	2.97%
Marine	Environmental → Aquatic → Marine	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.87%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.94%
Lake	Environmental → Aquatic → Freshwater → Lake	1.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Sediment	Environmental → Aquatic → Marine → Sediment	0.99%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.99%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.99%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.99%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.99%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.99%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.99%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103657

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066677_100368221	3300005171	Soil	DYVVRDDFVVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0066688_103480061	3300005178	Soil	YVVRDDFVVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0066388_1053372382	3300005332	Tropical Forest Soil	YVIRDDLVVNLGQRYFFVPRGDTLNHPVFETWGLGGLNKGRSETSLRVTYQF*
Ga0008090_153395951	3300005363	Tropical Rainforest Soil	DYVVRDDFVVNLAQRYFIEPRGHSTPIFETWGLGGLNAGRSETSLRLTYQF*
Ga0070708_1004080182	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RDDFVVNLSQRYVVTPRGHSTPIFSTWGLGSLNSGRSETDIRLTYQF*
Ga0070708_1014346132	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VVNVGQHYFVTPRGHSSPIFETWGLAGLNTGRSETTIRLTFQF*
Ga0066686_108199772	3300005446	Soil	VNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0070697_1009244352	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VDYVVRDDFVVNLGQHYFVAPRGHSTPIFETWGLAGLNAGRSETTLRLTYQF*
Ga0066697_106555221	3300005540	Soil	QRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0070695_1006573311	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	PFWMVDYVVRDDFVVNLSQRYMVTPRGHSTPIFETWGLSGLNAGRSETDIRLTYQF*
Ga0066695_109048131	3300005553	Soil	RYFVTPRGHHDPIFQTWGLGSLAQGRSETSLRLTYQF*
Ga0066699_108784091	3300005561	Soil	FVVNIAQRYFVAPRGHSTPIFETWGLGGLNAGRSETSLRLTYQF*
Ga0068861_1008835871	3300005719	Switchgrass Rhizosphere	NLSQRYIVTPRGHSTPIFSTWGLGSLNSGRSETNIRITYQF*
Ga0066903_1028071751	3300005764	Tropical Forest Soil	WNMEPFWSVDYVIRDDFVVNLGQRYFFVPRGDTLNHPVFETWGLAGLNKGRSETSLRITYQF*
Ga0066903_1073619131	3300005764	Tropical Forest Soil	DYVVRDDFVVNLAQRYFIEPTGHSTPIFETWGLGGLNADRSETSLRLTYQF*
Ga0066903_1073851761	3300005764	Tropical Forest Soil	RYFIEPRGHSTPIFETWGIGGLNADRSETALRLTYQF*
Ga0070712_1007455062	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	INLAQRYFVTPRGQSTPIFSPWGFGAASRDRSETELRLTYQF*
Ga0066665_104461594	3300006796	Soil	NLAQRYFITPRGHSTPIFESWGLGGLLTGRSETSLRLTYQF*
Ga0066659_104114773	3300006797	Soil	LVVNLAQRYFITPRGHSTPIFESWGLGGLLAGRSETSLRLTYQF*
Ga0066659_106526002	3300006797	Soil	YVVRDDFVVNVAQRYFVTPKGRSTPIFETWGLGCFNNSRSETELVLTYQF*
Ga0075428_1009223182	3300006844	Populus Rhizosphere	DDFVINLSQRYIVTPRGHSTPIFSTWGLGSLNSGRSETNIRLTYQF*
Ga0075420_1010195151	3300006853	Populus Rhizosphere	LSQRHIVTPHGHATPIFSTWGLGGLSSGRSETNLRITYQF*
Ga0075425_1018255312	3300006854	Populus Rhizosphere	LDYVVRDDMIVNVTQRYFVNPRGTSQPNFSPWGFGNLGRGRSESELRLTYQF*
Ga0075425_1022028361	3300006854	Populus Rhizosphere	YFVTPRGHSTPIFETWGLAGLNAGRSETTIRLTYQF*
Ga0073934_105265091	3300006865	Hot Spring Sediment	QRYMVTPRGHSTPIFETWGLAGLNAGRSETNIRLTYQF*
Ga0075434_1012188151	3300006871	Populus Rhizosphere	VDYVIRDDLLINLAQRYFVTPRGQSDPVYSPWGFGSFARDRSETELRLTYQF*
Ga0075426_105862961	3300006903	Populus Rhizosphere	VDYVIRDDFLINLAQRYFVTPRGQSTPVYSPWGFGSIARDRSETELRLTYQF*
Ga0075424_1021027542	3300006904	Populus Rhizosphere	DFVINVGQHYFVNPRGKKELFSSWGLAGLNSGRSETSIRLTYQF*
Ga0099793_104150381	3300007258	Vadose Zone Soil	DYVLRDDVVVNLAQRYFVTPRGRSTPIFETWGLAGLNSGRSETSLRLTFQF*
Ga0066710_1002110954	3300009012	Grasslands Soil	LVVNLAQRYFITPRGHSTPIFESWGLGGLLAGRSETSLRLTYQF
Ga0066710_1019010661	3300009012	Grasslands Soil	VVNVAQRYFVAPRGHSAPIFETWGLGGLNQGRSETSLRLTYQF
Ga0099829_117977262	3300009038	Vadose Zone Soil	VVNLAQRYFVTPRGHHTPIFETWGLAGLNAGRSETSLRLTFQF*
Ga0099827_119308731	3300009090	Vadose Zone Soil	AQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0111539_131757562	3300009094	Populus Rhizosphere	NLSQRYIVTPRGHHDPIYSTWGLGSLNSGRSETNIRLTYQF*
Ga0066709_1011662081	3300009137	Grasslands Soil	LAQRYFITPRGHSTPIFESWGLGGLLAGRSETSLRLTYQF*
Ga0111538_129620392	3300009156	Populus Rhizosphere	LPFWMVDYVVRDDFVINLSQRYIVTPKGHSTPIFSTWGLGSLNSGRSETDIRITYQF*
Ga0075423_101834951	3300009162	Populus Rhizosphere	DYVFRDDLVLNLGQRYFVNPRGKDQLFSAWGLAGLNSGRSETSIRLTYQF*
Ga0075423_105692652	3300009162	Populus Rhizosphere	RYFVNPRGKDQLFSAWGLAGLNSGRSETSIRLTYQF*
Ga0075423_114283001	3300009162	Populus Rhizosphere	NLAQRYFVTPRGHSTPIFETWGLAGLNTGRSETSLRLTFQF*
Ga0126382_122922492	3300010047	Tropical Forest Soil	DDLVVNLGQRYFFVPRGDTLNHPVFETWGLGGLNKGRSETSLRVTYQF*
Ga0126382_124948672	3300010047	Tropical Forest Soil	YFIEPRGHSTPIFETWGLAGLNADRSETSLRLTFQF*
Ga0134082_102495941	3300010303	Grasslands Soil	YFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0134109_100435594	3300010320	Grasslands Soil	VDYVVRDDFVVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0134065_101243642	3300010326	Grasslands Soil	DYVVRDDFVVNLAQRYFVTPMGHSTPIFETWGLAGINGDRSETELRLTYQF*
Ga0126383_129397281	3300010398	Tropical Forest Soil	LAQRYMVTPKGHSTPIFETFGLAGLNFGRSETELRLTYQF*
Ga0134127_101465051	3300010399	Terrestrial Soil	GHDHAPFWTLDYVMRDDLVLNIAQRYFVTPRGHHTPIFETWGLAGLNSGRSETSLRVTYQF*
Ga0134121_109135922	3300010401	Terrestrial Soil	DYVLRDDLVVNLAQRYFITPRGHSEPIFETWGLAGLNAGRSETSLRLTYQY*
Ga0137388_118685542	3300012189	Vadose Zone Soil	VVNLAQRYFVTPRGRETPIFETWGLAGLNSGRSETSLRLTFQF*
Ga0137381_102100493	3300012207	Vadose Zone Soil	VVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0137370_109066532	3300012285	Vadose Zone Soil	FVVNVAQRYFVTPKGRSTPIFETWGLGGLNNSRSETELVLTYQF*
Ga0137384_100811431	3300012357	Vadose Zone Soil	VRDDFVVNIAQRYFVTPMGHSTPIFETWGLAGINGDRSETELRLTYQF*
Ga0137390_101887704	3300012363	Vadose Zone Soil	VVRDDFVVNLGQRYFVTPRGHSTPIFDTWGLGGLNNSRSETELRLTYQF*
Ga0137397_111159691	3300012685	Vadose Zone Soil	INLAQRYFVTPRGHSEPIFQTWAPGGITAGRSETSLRLTYQF*
Ga0137416_108226682	3300012927	Vadose Zone Soil	YVVRDDFVVNLAQRYFVTPRGRSTPIFETWGLAGLNSGRSETSLRLTFQF*
Ga0137404_100658511	3300012929	Vadose Zone Soil	QRYFVTPMGHSTPIFESWGLGGLNNSRSETELVLTYQF*
Ga0137410_120975622	3300012944	Vadose Zone Soil	FWDVDYVLRDDLVVNLGQRYFVTPRGEHTPVFSPWGFGALSSGRSETSLRLTFQF*
Ga0163162_123386401	3300013306	Switchgrass Rhizosphere	EPFWDVDYIVRNDLVVNIGQRYFVTPRGHNTPIFETWGLAGLNQGRSETTIRLTYQW*
Ga0137418_107244142	3300015241	Vadose Zone Soil	VVNLAQRYFVTPRGRSTPIFETWGLAGLNSGRSETSLRLTFQF*
Ga0134073_102984712	3300015356	Grasslands Soil	WSMEPFWTVTYVVRDDFVLNVAQRYFVTPKGRSTPIFESWGLGGLNNSRSETELVLTYQF
Ga0134089_100872581	3300015358	Grasslands Soil	IAQRYFVTPMGHSQPIFETWGLAGINGGRSETELRLTYQF*
Ga0134089_103047641	3300015358	Grasslands Soil	MEPFWTVSYVVRDDFVVNVAQRYFVTPKGHSTPIFETWGLGGFNHGRSETELVLTYQF*
Ga0134089_105541442	3300015358	Grasslands Soil	DYVVRDDFVVNLAQRYFVTPRGRETPIFETWGLAGLNSGRSETSLRLTFQF*
Ga0182039_105208261	3300016422	Soil	DLIVNLAQRYFIEPRGHSTPIFETWGLGGLNEGRSETSLRLTYQF
Ga0134083_105569121	3300017659	Grasslands Soil	TIRDDLVVNLTQRYFITPYGQSEPIFDPWGFSSMSAGRSETSLRFTYQF
Ga0066667_102212511	3300018433	Grasslands Soil	NVAQRYFVTPKGRSTPIFESWGLGGLNNSRSETELVLTYQF
Ga0066667_111494712	3300018433	Grasslands Soil	VVRDDLVVNLAQRYMVTPRGHHNPIFETWGLAGLNAGRSETSVRLTLQF
Ga0066662_103413502	3300018468	Grasslands Soil	VVNLAQRYFVTPRGRSTPIFETWGLAGLNSGRSETSLRLTFQF
Ga0066662_116062242	3300018468	Grasslands Soil	VVRDYFVVNIAQRYFVTPMGHSTPIFESWGLAGINSGRSETEVRLTYQF
Ga0066669_100422311	3300018482	Grasslands Soil	VVNLAQRYFVTPRGRETPIFETWGLAGLNSGRSETSLRLTFQF
Ga0066669_109257293	3300018482	Grasslands Soil	VNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF
Ga0179594_103153982	3300020170	Vadose Zone Soil	FVVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF
Ga0224500_102681812	3300022213	Sediment	KDWLVFNLSQRYFVTPRGYGEPIYETWGIAGLNRGRSETVLRATFQF
Ga0207693_106588322	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	YVLRDDLLINLAQRYFVTPRGQSTPIFSPWGFGAASRDRSETELRLTYQF
Ga0207708_111710431	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NDFVFNIGQRFFVTPNGHSEPIFETWGLAGFNAGRSETTIRLTYQF
Ga0207648_113309011	3300026089	Miscanthus Rhizosphere	EIGNDLVVNIGQRYFVTPRGHHTPIFETWGLAGLNQGRSETTIRLTYQW
Ga0207675_1025264662	3300026118	Switchgrass Rhizosphere	VNLSQRYMVTPRGHSTPIFETWGLGGLNAGRSETDIRLTWQF
Ga0207675_1026119611	3300026118	Switchgrass Rhizosphere	FWMVDYVVRDDFVINLSQRYIVTPRGHSTPIFSTWGLGSLNSGRSETDIRLTYQF
Ga0209470_13542001	3300026324	Soil	QRYFVTPMGHSTPIFETWGLAGINGDRSETELRLTYQF
Ga0209375_10583511	3300026329	Soil	AVDYVVRDDFVVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF
Ga0209473_12911112	3300026330	Soil	LDYVVRDDFVVNLAQRYFVTPRGRSTPIFDTWGLGGLNNSRSETELRLTYQF
Ga0209057_11955262	3300026342	Soil	VDYVVRDDLVVNLAQRYFVTPRGHHDPIFQTWGLGSLAQGRSETSLRLTYQF
Ga0209683_105430492	3300027840	Wetland Sediment	NLGQRYYIQPHGHTTPIFETWGVAGLNAGRSETTLRVTYQF
Ga0209382_107770152	3300027909	Populus Rhizosphere	MVDYVVRDDFVINLSQRYIVTPRGHSTPIFSTWGLGSLNSGRSETNIRLTYQF
Ga0268264_126545331	3300028381	Switchgrass Rhizosphere	NQFAMEAFCDVDYVLRDDLVVNLGQRYFISPRGNSTPIFSPWGFGALSAGRSETSLRLTFQF
Ga0137415_105015102	3300028536	Vadose Zone Soil	RDDFVVNLAQRYFVTPRGRSTPIFETWGLAGLNSGRSETSLRLTFQF
Ga0137415_109750532	3300028536	Vadose Zone Soil	DYVLRDDFVINLAQRYFVNPRGKNQLYSAWGLAGLNSGRSETSIRLTYQF
Ga0307429_11197281	3300031368	Salt Marsh	FITPRGQSEPIFATWGLPSLSGRRSETSLRLTYQF
Ga0170818_1043122053	3300031474	Forest Soil	DDFVVNLAQRYFIEPRGHSSPIFETWGLGGLNADRSETSLRLTYQF
Ga0318515_106961521	3300031572	Soil	DLIVNLAQRYFIEPRGHSTPIFETWGLGGLNAGRSETSLRLTYQF
Ga0318548_105954711	3300031793	Soil	RYFITPRGHSTPIFETWGLGSLGAGRSETGLRLTYQF
Ga0318557_104351441	3300031795	Soil	VVRDDFVVNLAQRYFIEPRGRSTPIFETWGLGGLNAGRSETSLRLTYQF
Ga0310904_112462571	3300031854	Soil	VLPFWMVDYVVRDDFVINLSQRYIVTPRGQSTPIFSTWGIGSLNSGRSETNIRLTYQF
Ga0310892_103835601	3300031858	Soil	DDFVVNLSQRYFITPRGHSEPIFETWGLAGLNAGRSETALRLTYQY
Ga0214473_114589741	3300031949	Soil	TPSVGFTLSQHYFVTPKGHSEPIFETWGLSGLNAGRSETTVRLTYQF
Ga0318525_106809831	3300032089	Soil	RDDFVVNLAQRYFITPRGHSTPIFETWGLGGLNAGRSETSLRLTYQF
Ga0315910_109976531	3300032144	Soil	VNLAQRYFVTPRGHHEPSFETWGLAGLNAGRSETSLRLTYQY
Ga0307471_1023190261	3300032180	Hardwood Forest Soil	QFAMLPFWDLDYVLRDDFVVNVGQRYFVNPRGKEQLFSSWGLAGLNSGRSETSIRLTYQF
Ga0307472_1017791713	3300032205	Hardwood Forest Soil	VNLGQRYFVTPRGQSSPIFSPWGFGSLTGGRSETSLRLTYQF
Ga0315270_108434221	3300032275	Sediment	MEPFWTVDYVVRNDLVVNIGQRYFVTPRGNSTPIFETWGLADLNQGRSETSIRLTYQF
Ga0315287_112012572	3300032397	Sediment	VVNVGQRYFVTPRGHSDPIFETWGLGGLNAGRTETTIRLTYQF
Ga0335070_104695492	3300032829	Soil	MVVNVGQRYFVAPRGRSTPIFETWGLGGLSAGRSETTLRLTYQF

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign