Metagenome / Metatranscriptome Family F103655

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103655
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	78 residues
Representative Sequence	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPTQRITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Number of Associated Samples	81
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.77 %
% of genes near scaffold ends (potentially truncated)	23.76 %
% of genes from short scaffolds (< 2000 bps)	78.22 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.376 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.861 % of family members)
Environment Ontology (ENVO)	Unclassified (25.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.663 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.35% β-sheet: 22.12% Coil/Unstructured: 61.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03544	TonB_C	2.97
PF02585	PIG-L	1.98
PF12867	DinB_2	1.98
PF01740	STAS	1.98
PF15780	ASH	1.98
PF02371	Transposase_20	1.98
PF02566	OsmC	1.98
PF13646	HEAT_2	1.98
PF00078	RVT_1	1.98
PF08282	Hydrolase_3	0.99
PF07730	HisKA_3	0.99
PF01548	DEDD_Tnp_IS110	0.99
PF04519	Bactofilin	0.99
PF01799	Fer2_2	0.99
PF14534	DUF4440	0.99
PF01261	AP_endonuc_2	0.99
PF01175	Urocanase	0.99
PF01381	HTH_3	0.99
PF16640	Big_3_5	0.99
PF10067	DUF2306	0.99
PF00589	Phage_integrase	0.99
PF08818	DUF1801	0.99
PF04226	Transgly_assoc	0.99
PF13620	CarboxypepD_reg	0.99
PF05299	Peptidase_M61	0.99
PF10633	NPCBM_assoc	0.99
PF10546	P63C	0.99
PF01557	FAA_hydrolase	0.99
PF06877	RraB	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	2.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.97
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.98
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.98
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	1.98
COG2987	Urocanate hydratase	Amino acid transport and metabolism [E]	0.99
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.99
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.99
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.99
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.99
COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	General function prediction only [R]	0.99
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.99
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.99
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.99
COG3076	Regulator of RNase E activity RraB	Translation, ribosomal structure and biogenesis [J]	0.99
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.99
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.99
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.99
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.99
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.99
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.99
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.38 %
Unclassified	root	N/A	37.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.38 %
Unclassified	root	N/A	37.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.38 %
Unclassified	root	N/A	37.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.96 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	3.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3.96 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.83 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2.97 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.99 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.83 %
Pseudobacteroides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudobacteroides	2.97 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.99 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.83 %
Pseudobacteroides cellulosolvens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudobacteroides → Pseudobacteroides cellulosolvens	2.97 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.99 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100962376	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005167\|Ga0066672_10168139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384	Open in IMG/M
3300005435\|Ga0070714_100002181	All Organisms → cellular organisms → Bacteria	14386	Open in IMG/M
3300005435\|Ga0070714_100446279	All Organisms → cellular organisms → Bacteria → Acidobacteria	1228	Open in IMG/M
3300005435\|Ga0070714_100578547	Not Available	1077	Open in IMG/M
3300005436\|Ga0070713_100280750	Not Available	1528	Open in IMG/M
3300005436\|Ga0070713_100913017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	845	Open in IMG/M
3300005436\|Ga0070713_101336020	Not Available	695	Open in IMG/M
3300005458\|Ga0070681_10594985	Not Available	1020	Open in IMG/M
3300005529\|Ga0070741_10097705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3132	Open in IMG/M
3300005542\|Ga0070732_10207787	Not Available	1170	Open in IMG/M
3300005554\|Ga0066661_10341186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919	Open in IMG/M
3300005557\|Ga0066704_10597857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300006028\|Ga0070717_11349130	Not Available	648	Open in IMG/M
3300006059\|Ga0075017_100012617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5392	Open in IMG/M
3300006162\|Ga0075030_100117247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2164	Open in IMG/M
3300006162\|Ga0075030_100382018	Not Available	1123	Open in IMG/M
3300006162\|Ga0075030_101648711	Not Available	501	Open in IMG/M
3300006175\|Ga0070712_100756407	Not Available	832	Open in IMG/M
3300009038\|Ga0099829_10007245	All Organisms → cellular organisms → Bacteria	6920	Open in IMG/M
3300009088\|Ga0099830_10008537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	6130	Open in IMG/M
3300009090\|Ga0099827_11333673	Not Available	624	Open in IMG/M
3300009176\|Ga0105242_10757081	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300009551\|Ga0105238_11483453	Not Available	707	Open in IMG/M
3300009839\|Ga0116223_10044315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2937	Open in IMG/M
3300010043\|Ga0126380_11312068	Not Available	631	Open in IMG/M
3300010358\|Ga0126370_10592767	Not Available	955	Open in IMG/M
3300010358\|Ga0126370_11322068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300011120\|Ga0150983_14878905	Not Available	635	Open in IMG/M
3300012354\|Ga0137366_10149235	Not Available	1760	Open in IMG/M
3300012363\|Ga0137390_10956957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300012922\|Ga0137394_10633315	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300012924\|Ga0137413_11363421	Not Available	571	Open in IMG/M
3300012957\|Ga0164303_10711075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300014498\|Ga0182019_11375250	Not Available	523	Open in IMG/M
3300015242\|Ga0137412_10416320	Not Available	1038	Open in IMG/M
3300016294\|Ga0182041_12010158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudobacteroides → Pseudobacteroides cellulosolvens	538	Open in IMG/M
3300017822\|Ga0187802_10067402	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300017927\|Ga0187824_10019018	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300017936\|Ga0187821_10315747	Not Available	624	Open in IMG/M
3300017955\|Ga0187817_10011350	All Organisms → cellular organisms → Bacteria	5120	Open in IMG/M
3300018035\|Ga0187875_10187065	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300018086\|Ga0187769_10255427	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300020579\|Ga0210407_10011443	All Organisms → cellular organisms → Bacteria	6611	Open in IMG/M
3300020579\|Ga0210407_10025845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4364	Open in IMG/M
3300020581\|Ga0210399_10613222	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300020582\|Ga0210395_10022009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4689	Open in IMG/M
3300021168\|Ga0210406_10057769	All Organisms → cellular organisms → Bacteria	3373	Open in IMG/M
3300021170\|Ga0210400_10064974	All Organisms → cellular organisms → Bacteria	2849	Open in IMG/M
3300021178\|Ga0210408_10401676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1092	Open in IMG/M
3300021181\|Ga0210388_10062891	All Organisms → cellular organisms → Bacteria	3114	Open in IMG/M
3300021407\|Ga0210383_10226365	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300021432\|Ga0210384_10404201	Not Available	1230	Open in IMG/M
3300021432\|Ga0210384_11030239	Not Available	725	Open in IMG/M
3300021475\|Ga0210392_10831565	Not Available	690	Open in IMG/M
3300021478\|Ga0210402_10550614	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300022722\|Ga0242657_1091192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300024288\|Ga0179589_10412231	Not Available	620	Open in IMG/M
3300025898\|Ga0207692_10604867	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300025912\|Ga0207707_10534325	Not Available	998	Open in IMG/M
3300025928\|Ga0207700_10271864	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300025928\|Ga0207700_10648016	Not Available	942	Open in IMG/M
3300025929\|Ga0207664_10231383	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300025934\|Ga0207686_10647246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	836	Open in IMG/M
3300025939\|Ga0207665_10150172	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300026309\|Ga0209055_1120213	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300026835\|Ga0207782_113645	Not Available	640	Open in IMG/M
3300027842\|Ga0209580_10184298	Not Available	1033	Open in IMG/M
3300027846\|Ga0209180_10009774	All Organisms → cellular organisms → Bacteria	4928	Open in IMG/M
3300027854\|Ga0209517_10067753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2555	Open in IMG/M
3300027911\|Ga0209698_10089024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2603	Open in IMG/M
3300027911\|Ga0209698_10360818	Not Available	1141	Open in IMG/M
3300027911\|Ga0209698_11403483	Not Available	509	Open in IMG/M
3300029922\|Ga0311363_11422824	Not Available	563	Open in IMG/M
3300031231\|Ga0170824_101291408	Not Available	709	Open in IMG/M
3300031474\|Ga0170818_102913799	Not Available	805	Open in IMG/M
3300031715\|Ga0307476_11185125	Not Available	559	Open in IMG/M
3300031718\|Ga0307474_10264581	Not Available	1319	Open in IMG/M
3300031720\|Ga0307469_10682251	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300031720\|Ga0307469_10890751	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300031720\|Ga0307469_11834267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudobacteroides → Pseudobacteroides cellulosolvens	586	Open in IMG/M
3300031740\|Ga0307468_100917198	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031823\|Ga0307478_10013150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5717	Open in IMG/M
3300031823\|Ga0307478_10038480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3492	Open in IMG/M
3300031823\|Ga0307478_10292021	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300032001\|Ga0306922_11257044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300032174\|Ga0307470_10180002	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300032174\|Ga0307470_11489990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudobacteroides → Pseudobacteroides cellulosolvens	562	Open in IMG/M
3300032180\|Ga0307471_103136262	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300032205\|Ga0307472_100834246	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300032783\|Ga0335079_10020782	All Organisms → cellular organisms → Bacteria	7524	Open in IMG/M
3300032783\|Ga0335079_10435860	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300032783\|Ga0335079_11115006	Not Available	798	Open in IMG/M
3300032828\|Ga0335080_10618201	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300032954\|Ga0335083_11120537	Not Available	614	Open in IMG/M
3300032955\|Ga0335076_10069979	All Organisms → cellular organisms → Bacteria	3456	Open in IMG/M
3300032955\|Ga0335076_11135929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	664	Open in IMG/M
3300033134\|Ga0335073_11231578	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300033158\|Ga0335077_10718876	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300034195\|Ga0370501_0063742	Not Available	1193	Open in IMG/M
3300034282\|Ga0370492_0198592	Not Available	818	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.15%
Aquatic	Environmental → Aquatic	11.88%
Plants	Host-Associated → Plants	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.16%
Sediment	Environmental → Aquatic → Sediment	6.93%
Freshwater	Environmental → Aquatic → Freshwater	4.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.47%
Loam	Environmental → Terrestrial → Soil → Loam	17.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	12.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.97%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026835	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1009623762	3300002245	Forest Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQSDPTQKITVVKVLTSQSDAEAEVSRLSHVNADKSCLYFYCTSRLIEQGQ*
Ga0066672_101681391	3300005167	Soil	KFPHVYPIVRINTPIDQTDLTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ*
Ga0070714_1000021819	3300005435	Agricultural Soil	MERAPDTPHSKYLHVYPIVRIDTPIYETDPTSSITVVKVLTSQAAAETEVARLNQVNADKRCMYFYCTSRLIDQGMESSKLM*
Ga0070714_1004462792	3300005435	Agricultural Soil	MQRAPDSPHSKYRHVYPIVRIDTPLDQANAERRITVVKVLTSQEGAEAEVSRLNHINADKSCKYFWCTSRLIEESADVPKLV*
Ga0070714_1005785473	3300005435	Agricultural Soil	MERAPDTPHSKYPHVYPIVRIDIPIDQTDPTEKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYSYCTSRLIEKGQ*
Ga0070713_1002807502	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLRAPDQPHSKYPHVYPIVRINTPFDQAYPTNTATVVKVLTSQAAAEAEVTRLNQINADKSCTYFYCTSKLIELGQ*
Ga0070713_1009130171	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SPHSKYPHVYPIVRVDTPLDPKDLQSKITVVKVMTSQAAVEAEVSRLNQINADKSCTYFYCTSRLVGQAP*
Ga0070713_1013360201	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQRAPESPHSKYPHVYPIVRLDTPLNPNDPESKIMVVKVLTSQLAVEAEVSRLKQINTDKSCKYFYCTSRLVEQGQ*
Ga0070681_105949852	3300005458	Corn Rhizosphere	MRRAPDLPHSKYQHVYPIVRIDTPLQQSAPEDKITVVKVLTSQGAAEAEVSRLNQINVEKSCTYFYCTSRLIEQVDE*
Ga0070741_100977051	3300005529	Surface Soil	MQGAPEQPHSKYSHVYPIVRIDKPFDPVCPTNTVTVVKVLTSQTAAETEVSRLNQINTDKSCTYFCCISRLVEQSADEARLV*
Ga0070732_102077873	3300005542	Surface Soil	MQRAPDRPHSKYPHVYPIVRIDTPIDQTDPTQKITVVKVLTSQSDAEAEVSRLSHVNADKSCLYFYCTSRLIEQGQRVLSRFYVN*
Ga0066661_103411862	3300005554	Soil	MELAPDTPHPKFPHVYPIVRINTPIDQTDLTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ*
Ga0066704_105978572	3300005557	Soil	MERARDTPHSKFPHVYPIVRINTPIDQTDLTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ*
Ga0070717_113491301	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MEQATDRPHSKYPQVYPIVRIDTPIDQTDPTSRITVVKVVASQVAAEAEVSGLNQINADKSCMYFYCTSRLIEQSMESSKLV*
Ga0075017_10001261713	3300006059	Watersheds	MLTVACDTLPVMERAPDRSHSKYRHVYPIVRIDTPFDQVHPTNTVTVVKVLTSQIAAEAEVSRLNQTNAEKSCSYFYCTSRLIEQSVDSQIT*
Ga0075030_1001172473	3300006162	Watersheds	MKRAPGTPHSKYPHVYPIVRVETPIDQSDPTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIAQNQ*
Ga0075030_1003820182	3300006162	Watersheds	MERAPDTPHSKYPHVYPILRIDTPIDHSDPTQKITVVKVLTSQSDAEAEVSRLSQVNAGKSCLYFYCTSRLIEQGQ*
Ga0075030_1016487111	3300006162	Watersheds	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPKSRITVVKVLTSQVAAEAEVSRLNQINADKSCMYFYCTSRLIEQSMESSKLVQ*
Ga0070712_1007564072	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEQATDRPHSKYPQVYPIVRIDTPIDQTDPTSRITVVKVVASQVAAEAEVSGLNQINAGKSCMYFYCTSRLIEQSMESSKLV*
Ga0099829_100072452	3300009038	Vadose Zone Soil	MERAPDTPHAKYPHVYPIVRIDTPIDQTDPAKKVTVVKVLTSQSEAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ*
Ga0099830_100085373	3300009088	Vadose Zone Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPAKKVTVVKVLTSQSEAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ*
Ga0099827_113336732	3300009090	Vadose Zone Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPAKKVTVVKVLTSQSEAEAEVSRLSRVNADKSCLYFYCTSRLIEQGQ*
Ga0105242_107570812	3300009176	Miscanthus Rhizosphere	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPKSRITVVKVLTSQVAAESEVSRLNQINADKSCMYFYCTSRLIEQSTESSKLV*
Ga0105238_114834531	3300009551	Corn Rhizosphere	RAPDTPHSKYPHVYPVVRIDTPIDQTDPAQKITVVKVLTSQSDAEAEVLRLSQVNADKSCLYFYCTSRLIEQGQ*
Ga0116223_100443154	3300009839	Peatlands Soil	MERAPDTPHSKYPHVYPIVRIDTPIYQTDPTSSITVVKVLTSQVAAEAEVSRLNQVNADKSCMYFYCTSRLIEQSMESSKLV*
Ga0126380_113120681	3300010043	Tropical Forest Soil	VKGAPGTLHSKYEHVYPIVRIDTPFDLCGDPANQITVVKVLISQIAAETEVLRLNQINAEKGCKYFYSISRLIDDGQ*
Ga0126370_105927671	3300010358	Tropical Forest Soil	MQRAPDRPHSKYPHVYPIVRIDTPIDHTDPTQKVTVVKVLTSQSDAEAEVSRLSRVNADKSCVYFYCTSKLIEQGF*
Ga0126370_113220683	3300010358	Tropical Forest Soil	ERAPDRPHSKYTHVYPIVRIDPPIDSAYPTNTIIVIKVLTSQEAAELEVSRLNKLKHGKGSSYFYCTSRLIE*
Ga0150983_148789052	3300011120	Forest Soil	MQRAPDQPHSKYPHVYPIVRIDTPIDQTDPARKITVVKVLTSQSDAEAEVSRLSHVNADKSCLYFYCTSRLIEQG*
Ga0137366_101492351	3300012354	Vadose Zone Soil	MQRASDSPHSKYPHVYPIIRIDTPLDQDDPQGKIIVVKVLTSQVAVEAEVSRLNEINADKSCTYFYCTSRLIEQAQ*
Ga0137390_109569572	3300012363	Vadose Zone Soil	MHRAPDSPHSKYQHVYPIVRIDTPLDQGDPESKISVVKVLTSQVAAEAEVSRLNQINADKSCTYFYCTSRLIEQGE*
Ga0137394_106333151	3300012922	Vadose Zone Soil	SKYPHVYPIVRIDTPFDQTDPTSSVTVVKVLTSQVAAEAEVARLNKINADKSCLYFCCTSKLIEQSMESPKLV*
Ga0137413_113634211	3300012924	Vadose Zone Soil	MERAPDTPHSKCPHVYPIVRIDTPIDQTDPTSGIKVVKVLTSQVAAKTEVSRLTQINADKSCIYFYCTSKLIEQSMESPKLV*
Ga0164303_107110752	3300012957	Soil	MTVRAPDRPHAKYEHVYPIVRIDLPLTDRDPTDRVTVVKVLTSQKGAEIEASLLNQINADKSCTYFYCTSRLI
Ga0182019_113752501	3300014498	Fen	MERAPDTPHSKHPHVYPIVRIDTPIDQTDPTKTITVVKVLTSQSDAEAEVSRLSQVNADKSCRYFCCTSRLIDQGQ*
Ga0137412_104163202	3300015242	Vadose Zone Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPTSGIKVVKVLTSQVAAKTEVSRLTQINADKSCIYFYCASKLIEQSMESPKLV*
Ga0182041_120101581	3300016294	Soil	MERAPDQPHSKYPHVYPIVRFDTPIDESNAKNRITVVKVLTSQGAAKAEVSRLNQINAGKSCTYFWYTSRLIEQSEVAPKLV
Ga0187802_100674021	3300017822	Freshwater Sediment	MQRAPDRPHSKYPHVYPIVRIDTPIDQTDPTQKIMVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Ga0187824_100190181	3300017927	Freshwater Sediment	MQRTPDSPHSKYRHVYPIVRIDTPLDQANAERRITVVKVLTSQEGAEAEVSRLNHINADKSCKYFWCTSRLIEQSADMPKLV
Ga0187821_103157471	3300017936	Freshwater Sediment	TCGMQRAPDSPHSKYRHVYPIVRIDTPLDQANAERRITVVKVLTSQEGAEAEVSRLNHINADKSCKYFWCTSRLIEESADVPKLV
Ga0187817_100113503	3300017955	Freshwater Sediment	MIVRAPDRPHAKYEHVYPIVRIDLPLTDRNPTDRVTVVKVLTSQKGAEIEASRLNQINADKSCTYFYCTSRLIEQSTESP
Ga0187875_101870651	3300018035	Peatland	HCCLNLRAVARAPDQPHSKFEHVYPIVRVDTPFDQTYPTNTVAVAKVLTSQADAEVEVARLNELNANKSCVYFYCTSRLIEEPLKGGE
Ga0187769_102554271	3300018086	Tropical Peatland	MERAPDRPHSKYPHVYPIVRINTPIDQPHPTNTITVVKVLTSQGAADAEVSRLNQINAGKSCTYFWCTSRLIEEAEHSPKL
Ga0210407_100114437	3300020579	Soil	MQRAPDQPHSKYPHVYPIVRIDTPIDQTDPARKITVVKVLTSQSDAEAEVSRLSHVNADKSCLYFYCTSRLIEQG
Ga0210407_100258452	3300020579	Soil	MEQATDRPHSKYPQVYPIVRIDTPIDQTDPTSRITVVKVVASQVAAEAEVSGLNQINADKSCMYFYCTSRLIEQSMESSKLV
Ga0210399_106132221	3300020581	Soil	MEQATDRPYSKYPQVHPIVRIDTPIDQTDPTSRITVVKVVASQVAAEAEVSGLNQINADKSCMYFYCTSRLIEQSMESSKLV
Ga0210395_100220092	3300020582	Soil	MDRAPDTPHSRYPHVYPIVRIDTPIDQSDPTQKITVVKVLTSQSDAEAEVSRLSQVNAGKSCMYFYCTSRLIEQVQ
Ga0210406_100577691	3300021168	Soil	MQRAPDQPHSKYPHVYPIVRIDTPIDQTDPARKITVVKVLTSQSDAEAEVSRLSHVNPDKSCLYFYCTSRLIEQ
Ga0210400_100649743	3300021170	Soil	MERAPDTPHSKYPHVYPIVRVDTPIDQSDPTQKITVVKVLTSQSEAEAEVSRLSQVNADKSCLYFYCTSRLIAQNQ
Ga0210408_104016763	3300021178	Soil	MQRAPDKPHSKYQHVYPIVRIDKPFGSVDPTNQIMVVKVLTSQEAAEVEVSRLNKVNADKSCQYFYCTSRLIEEDADSSQLV
Ga0210388_100628911	3300021181	Soil	MERAPDTPHSKHPHVYPIVRIDTPIDQTDPTKTITVVKVLTSQSDAEAEVSRLSQVNAEKSCRYFYCTSRLVDQGQ
Ga0210383_102263652	3300021407	Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPTQRITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Ga0210384_104042011	3300021432	Soil	MQRAPDQPHSKYPHVYPIVRIDTPIDQTDPARKITVVKVLTSQSDAEAEVSRLSHVNADKSCLYFYC
Ga0210384_110302392	3300021432	Soil	MQRAPDKPHSKYKHVYPIVRIDTPFGSADPTNQIMVVKVLTSQEAAEVEVSRLNKVNADKSCQYFYCTSRLIEENADSS
Ga0210392_108315651	3300021475	Soil	MERAPHSKYPHVYPIVRIDTPIDQTDPTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Ga0210402_105506143	3300021478	Soil	MERSPDTPHSKHPHVYPIVRIDTPIDQTDPTKAITVVKVLTSQSDAEAEVSRLSQVNADKSCRYFYCTSRLIDQGQ
Ga0242657_10911922	3300022722	Soil	MDRAPDTPHSRYPHVYPIVRIDTPIDQTDPTQRITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Ga0179589_104122311	3300024288	Vadose Zone Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPAQKITVVKVLTSQPDAEAEVSRLSQVNADRSCLYFYCTSRLIEQGQ
Ga0207692_106048672	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MEQATDRPHSKYPQVYPIVRIDPPLDQADPTNRITMVKVLVSQLAAEAEVLRLNKINADKSCMYFYRTSRLIEESTDST
Ga0207707_105343252	3300025912	Corn Rhizosphere	MRRAPDLPHSKYQHVYPIVRIDTPLQQSAPEDKITVVKVLTSQGAAEAEVSRLNQINVEKSCTYFYCTSRLIEQVDE
Ga0207700_102718642	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLRAPDQPHSKYPHVYPIVRINTPFDQAYPTNTATVVKVLTSQAAAEAEVTRLNQINADKSCTYFYCTSKLIELGQ
Ga0207700_106480161	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQGAPDSPHSKYPHVYPIVRLDTPLNPNDPESKIMVVKVLTSQLAVEAEVSRLKQINTDKSCKYFYCTSRLVEQGQ
Ga0207664_102313832	3300025929	Agricultural Soil	MEQATDRPHSKYPQVYPIVRIDTPIDQTDPTSRITVVKVVASQVAAEAEVSGLNQINADKSCMYFYCTSRLIEQSM
Ga0207686_106472461	3300025934	Miscanthus Rhizosphere	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPKSRITVVKVLTSQVAAESEVSRLNQINADKSCMYFYCTSRLIEQSTESSKLV
Ga0207665_101501721	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTERAPDRPHAKYEHVYPIVRIDLPLTDRNPTDRVTVVKVLTSQKGAEIEASRLNQINADKSCTYFYCTSRLIEQSTDSP
Ga0209055_11202132	3300026309	Soil	MELAPDTPHPKFPHVYPIVRINTPIDQTDLTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCL
Ga0207782_1136452	3300026835	Tropical Forest Soil	MAIFRQVGLPARLAYTRRMQRVPDRPHSKYPHVYPIVRIDTPIDEADPMQKITVVKVLTSQSDAEAEVSRLSEVNADKSCLYFYCTSRLIEQGQ
Ga0209580_101842982	3300027842	Surface Soil	MQRAPDRPHSKYPHVYPIVRIDTPIDQTDPTQKITVVKVLTSQSDAEAEVSRLSHVNADKSCLYFYCTSRLIEQGQRVLSRFYVN
Ga0209180_100097741	3300027846	Vadose Zone Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPAKKVTVVKVLTSQSEAEAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Ga0209517_100677532	3300027854	Peatlands Soil	MERAPDTPHSKYPHVYPIVRIDTPIYQTDPTSSITVVKVLTSQVAAEAEVSRLNQVNADKSCMYFYCTSRLIEQSMESSKLV
Ga0209698_100890243	3300027911	Watersheds	MKRAPGTPHSKYPHVYPIVRVETPIDQSDPTQKITVVKVLTSQSDAEAEVSRLSQVNADKSCLYFYCTSRLIAQNQ
Ga0209698_103608181	3300027911	Watersheds	MERAPDTPHSKYPHVYPILRIDTPIDHSDPTQKITVVKVLTSQSDAEAEVSRLSQVNAGKSCLYFYCTSRLIEQGQ
Ga0209698_114034832	3300027911	Watersheds	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPKSRITVVKVLTSQVAAEAEVSRLNQINADKSCMYFYCTSRLIEQSMESSKLVQ
Ga0311363_114228241	3300029922	Fen	LAFGGCCLNLRAVARAPDQPHSKFEHVYPIVRVDTPFDQTYPTNTVAVAKVLTSQADAEVEVARLNELNANKSCVYFYCTSRLIEE
Ga0170824_1012914081	3300031231	Forest Soil	YGDLTPIGFPSTLAYTRGMHQAPDSPHSKYQHVYPIVRIDTPLDQGDPENKITVVKVLTSQVAAEAEVSRLNQTNAEKNCTYFYCTSRLIEQGQ
Ga0170818_1029137991	3300031474	Forest Soil	STLAYTRGMHQAPDSPHSKYQHVYPIVRIDTPLDQGDPENKITVVKVLTSQVAAEAEVSRLNQTNAEKNCTYFYCTSRLIEQGQ
Ga0307476_111851251	3300031715	Hardwood Forest Soil	MERAPDRPHSKYPHVYPIVRIDTPIDQFHPTNTITVVKVLTSQGAAEAEVSRLNEINAGKSSTYFWCTSRLIEQT
Ga0307474_102645812	3300031718	Hardwood Forest Soil	MAYTRRMHGAPDQPHSKYKHVYPIVRIDKPISATDPANSIMVVKVLTSQVDAEAEVSRLNQINADKSCFYFYCISRLIEQSAESPQLV
Ga0307469_106822511	3300031720	Hardwood Forest Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPAQKITVVKVLTSQSDAEAEASRLNQLNADKSCLYFYCTSRLIEEGRV
Ga0307469_108907511	3300031720	Hardwood Forest Soil	MERALYTPHSKYPHVYPIVRVDTPIDQSDPMQKITVVKVLTSQPDAEAEVSRLNKVNADKSCLYFYCTSRLIEQGQ
Ga0307469_118342671	3300031720	Hardwood Forest Soil	MERAPDTPHSKHPHVYPIVRIDTPIDQTDPTSRITVVKVLTSQVAAEAEVSRLNQINADKSCVYFYCTSRLIEQSMESSKLV
Ga0307468_1009171981	3300031740	Hardwood Forest Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQTDPKSRITVVKVLTSQVAAESEVSRLNQINADKSCMYFYCTSRLIEQSTE
Ga0307478_100131509	3300031823	Hardwood Forest Soil	MQRAPDKPHSKYQHVYPIVRIDKPFGSVDPTNQIMVVKVLTSQEAAEVEVSRLNKVNADKSCQYFYCTSRLIEEDTDSSQLV
Ga0307478_100384804	3300031823	Hardwood Forest Soil	MHAAPDQAHSKYKHVYPIVRIDKPISATDPANSIMVVKVLTSQVDAEAEVSRLNQINADKSCVYFYCTSRLIEQSAESPQLV
Ga0307478_102920211	3300031823	Hardwood Forest Soil	MDRAPDTPHSRYPHVYPIVRIDTPIDQSDPTQKITVVKVLTSQSDAEAEVSRLSQVNAGKCCMYFYCTSRLIEQVQ
Ga0306922_112570441	3300032001	Soil	AEDTFQIPAVYPIVRIDTPIDQSEPTNRITVVKVLTSQGADEAEVLRLKQIKAEKSCSYFYCTSRRIEQSDDLPR
Ga0307470_101800022	3300032174	Hardwood Forest Soil	MAIFRQLAFPVPVAETHRMERAPDTPHSKHPHVYPIVRIDTPIDQTDPTQKITVVKVLTSQSDADAEVSRLSQVNADKSCLYFYCTSRLIEQGQ
Ga0307470_114899901	3300032174	Hardwood Forest Soil	MQGAPDQPHSKYKHVYPIVRIDKPISATDPTNSIMVVKVLTSQVDAEAEVSRLNQINADKSCVYFYCTSRLIEQ
Ga0307471_1031362623	3300032180	Hardwood Forest Soil	MRRAPDSPHSKYQHVYPIVRVDRPLDETNAENKIVVVKVLTSQAAAEVEVLRLNQVNADKSCTYFYCTSRLIEDQ
Ga0307472_1008342461	3300032205	Hardwood Forest Soil	MERASDTPHSKYPHVYPIVRIDTPIDQTDPAQKITVVKVLTSQSDAEAEASRLNQLNADKSCLYFYCTSRLIEEGRV
Ga0335079_100207826	3300032783	Soil	MPRAPDSPHAKYPHVYPIVRIDMPLTGDPQNQVTVVKVLTTQLEAEAEIARLNQINADKSCTYFYCTSRLAEQGE
Ga0335079_104358602	3300032783	Soil	MERAQDRPHSKHPHVYPIVRIDTPIGQSDPKNRITVVKVLTSQRAADAEVSRLNQINANKSCTYFWCTSRLIEQSERSPKLV
Ga0335079_111150061	3300032783	Soil	MQGAPDRPHSENPHVYPIVRIDTPIDHIDPTQKITVVKVLTSQSDAEAEVSRLSEVNADKSCLYFYCTSRLIEQSQSRLNGSRLPAAEV
Ga0335080_106182012	3300032828	Soil	MQGAPDRPHSEYPHVYPIVRIDTPIDHIDPTQKITVVKVLTSQSDAEAEVSRLSEVNADKSCLYFYCTSRLIEQSQSRLNGSRLPAAEV
Ga0335083_111205372	3300032954	Soil	MGRAPDRPHSKYQHVYPIVRINTPIDQAHPTNTITVVKVLTSQGAADAEVSRLNEINAGKSCT
Ga0335076_100699792	3300032955	Soil	MQGAPDRPHSEYPHVYPIVRVDTPIDHIDPTQKITVVKVLTSQSDAEAEVSRLSEVNADKSCLYFYCTSRLIEQSQSRLNGSRLPAAEV
Ga0335076_111359291	3300032955	Soil	MQGAPDRPHSENPHVYPIVRIDTPIDHIDPTQKITVVKVLTSQSDAEAEVSRLSEVNADKSCL
Ga0335073_112315782	3300033134	Soil	MERAPDTPRSKYPHVYPILRIDTPIDQSDPTQKITVVKVLTSQSDAEAEVSRLSQVNAGKSCLYFYCTSRLIEQRQ
Ga0335077_107188761	3300033158	Soil	HGMQGAPDRPHSENPHVYPIVRIDTPIDHIDPTQKITVVKVLTSQSDAEAEVSRLSEVNADKSCLYFYCTSRLIEQSQSRLNGSRLPAAEV
Ga0370501_0063742_794_1024	3300034195	Untreated Peat Soil	MERAPDTPHSKHPHVYPIVRIDTPIDQTDPTKTITVVKVLTSQADAEAEVSRLSQVNADKSCRYFCCTSRLIDQGQ
Ga0370492_0198592_74_304	3300034282	Untreated Peat Soil	MERAPDTPHSKYPHVYPIVRIDTPIDQSDPTQKITVVKVLTSQSDAEGEVSRLSQVNADKSCLYFYCTSRLIEQGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103655

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences