Metagenome / Metatranscriptome Family F103653

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103653
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	52 residues
Representative Sequence	SLHHFKARFDPEGLVEAAVGKAIHDEAAYRELSGGEAGYEGFFPAYRRPSG
Number of Associated Samples	94
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.99 %
% of genes near scaffold ends (potentially truncated)	98.02 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.079 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.772 % of family members)
Environment Ontology (ENVO)	Unclassified (32.673 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.554 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.78% β-sheet: 0.00% Coil/Unstructured: 77.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00535	Glycos_transf_2	63.37
PF01741	MscL	3.96
PF13360	PQQ_2	2.97
PF00561	Abhydrolase_1	1.98
PF02397	Bac_transf	0.99
PF13570	PQQ_3	0.99
PF00486	Trans_reg_C	0.99
PF00534	Glycos_transf_1	0.99
PF01545	Cation_efflux	0.99
PF06092	DUF943	0.99
PF13517	FG-GAP_3	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	3.96
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.99
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.99
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.99
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.24 %
Unclassified	root	N/A	7.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	74.26 %
Unclassified	root	N/A	7.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	62.38 %
Unclassified	root	N/A	7.92 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	61.39 %
Unclassified	root	N/A	7.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	61.39 %
Unclassified	root	N/A	7.92 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	61.39 %
Unclassified	root	N/A	7.92 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0677934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2951	Open in IMG/M
3300000956\|JGI10216J12902_119924841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300001205\|C688J13580_1066746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300004157\|Ga0062590_101612770	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005093\|Ga0062594_103319793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300005184\|Ga0066671_11016389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	521	Open in IMG/M
3300005332\|Ga0066388_107752588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300005338\|Ga0068868_101171653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300005339\|Ga0070660_100408294	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300005347\|Ga0070668_101395067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	639	Open in IMG/M
3300005356\|Ga0070674_101133783	All Organisms → cellular organisms → Bacteria → Terrabacteria group	692	Open in IMG/M
3300005438\|Ga0070701_10103799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1578	Open in IMG/M
3300005441\|Ga0070700_101433275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300005459\|Ga0068867_101804229	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005549\|Ga0070704_100229188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1514	Open in IMG/M
3300005587\|Ga0066654_10573658	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300005614\|Ga0068856_100190711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2063	Open in IMG/M
3300005615\|Ga0070702_100361736	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300005764\|Ga0066903_103195025	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300006031\|Ga0066651_10034202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2295	Open in IMG/M
3300006031\|Ga0066651_10116274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1367	Open in IMG/M
3300006175\|Ga0070712_100777641	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300006175\|Ga0070712_101265484	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006576\|Ga0074047_11964304	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300006755\|Ga0079222_12589490	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300006854\|Ga0075425_100510153	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300007076\|Ga0075435_101053495	Not Available	711	Open in IMG/M
3300009098\|Ga0105245_10073481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3109	Open in IMG/M
3300009148\|Ga0105243_10655822	Not Available	1018	Open in IMG/M
3300009174\|Ga0105241_10775125	Not Available	881	Open in IMG/M
3300009840\|Ga0126313_10346908	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300010045\|Ga0126311_10028859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3394	Open in IMG/M
3300010335\|Ga0134063_10321088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	748	Open in IMG/M
3300010399\|Ga0134127_13176913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300011994\|Ga0120157_1056156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300012212\|Ga0150985_105950025	Not Available	1141	Open in IMG/M
3300012350\|Ga0137372_10099112	All Organisms → cellular organisms → Bacteria	2448	Open in IMG/M
3300012351\|Ga0137386_11290290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300012353\|Ga0137367_10312563	Not Available	1122	Open in IMG/M
3300012491\|Ga0157329_1010980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	718	Open in IMG/M
3300012497\|Ga0157319_1002353	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300012508\|Ga0157315_1011823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	794	Open in IMG/M
3300012512\|Ga0157327_1023735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300012519\|Ga0157352_1094244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300012912\|Ga0157306_10005366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2342	Open in IMG/M
3300012951\|Ga0164300_10971373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300012958\|Ga0164299_11316022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300012960\|Ga0164301_11250169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300012986\|Ga0164304_11562322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300012988\|Ga0164306_10291078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1188	Open in IMG/M
3300012988\|Ga0164306_11151869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300012989\|Ga0164305_11504107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300013297\|Ga0157378_10353593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1436	Open in IMG/M
3300013307\|Ga0157372_10245789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2076	Open in IMG/M
3300014058\|Ga0120149_1084740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300014157\|Ga0134078_10682716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300014745\|Ga0157377_10832139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300015371\|Ga0132258_12386243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1325	Open in IMG/M
3300017944\|Ga0187786_10178487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300018032\|Ga0187788_10235146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300018066\|Ga0184617_1063119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	970	Open in IMG/M
3300019873\|Ga0193700_1069445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300022756\|Ga0222622_10092033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1843	Open in IMG/M
3300023057\|Ga0247797_1040900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300024245\|Ga0247677_1051398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300025915\|Ga0207693_10724108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300025919\|Ga0207657_10561878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	892	Open in IMG/M
3300025921\|Ga0207652_11901909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300025929\|Ga0207664_10925873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M
3300025934\|Ga0207686_10556626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	897	Open in IMG/M
3300025935\|Ga0207709_10543674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	912	Open in IMG/M
3300025935\|Ga0207709_10875385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300025938\|Ga0207704_11517620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300025972\|Ga0207668_11136012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300026023\|Ga0207677_10831986	Not Available	828	Open in IMG/M
3300026075\|Ga0207708_10034165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3866	Open in IMG/M
3300026121\|Ga0207683_10106444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2508	Open in IMG/M
3300026121\|Ga0207683_10430597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1215	Open in IMG/M
3300028379\|Ga0268266_10644956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1019	Open in IMG/M
3300028592\|Ga0247822_11355994	All Organisms → cellular organisms → Bacteria → Terrabacteria group	597	Open in IMG/M
3300028711\|Ga0307293_10227163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	594	Open in IMG/M
3300028715\|Ga0307313_10084908	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300028744\|Ga0307318_10260372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300028784\|Ga0307282_10671565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300028787\|Ga0307323_10279757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300028787\|Ga0307323_10300352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300028793\|Ga0307299_10087601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1160	Open in IMG/M
3300028807\|Ga0307305_10098437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1352	Open in IMG/M
3300028807\|Ga0307305_10366472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300028819\|Ga0307296_10208043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1062	Open in IMG/M
3300028828\|Ga0307312_11177482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300028875\|Ga0307289_10238675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	748	Open in IMG/M
3300028884\|Ga0307308_10347285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	710	Open in IMG/M
3300030336\|Ga0247826_10290466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1167	Open in IMG/M
3300031562\|Ga0310886_10364325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300031771\|Ga0318546_11273070	Not Available	516	Open in IMG/M
3300031995\|Ga0307409_101291323	Not Available	755	Open in IMG/M
3300032008\|Ga0318562_10249719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1030	Open in IMG/M
3300033004\|Ga0335084_11798088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300033158\|Ga0335077_11829739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300033412\|Ga0310810_11278479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.32%
Host-Associated	Host-Associated	30.69%
Engineered	Engineered	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.34%
Plants	Host-Associated → Plants	30.69%
Aquatic	Environmental → Aquatic	1.98%
Solid Waste	Engineered → Solid Waste	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.87%
Sediment	Environmental → Aquatic → Sediment	1.98%
Grass	Engineered → Solid Waste → Grass	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.50%
Loam	Environmental → Terrestrial → Soil → Loam	12.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001205	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_06779345	3300000156	Sugar Cane Bagasse Incubating Bioreactor	RADSLHHFKARFDPEGLLEAAVGKAIHDGEAYSRLGGGEASLDGFFPAYRRARQE*
JGI10216J12902_1199248412	3300000956	Soil	GGKADSLHHFKARFDPEGLVEAAVGKAIHDEDAYRRLSGGETGFDGFFPTYRSRTPT*
C688J13580_10667461	3300001205	Soil	HFKARFDPEGLVPAAIGKAIHDEAAYRELSGGETGFDGFFPAYRRSNG*
Ga0062590_1016127701	3300004157	Soil	ALHHFKARFDPEGLVPAAVGKAIHDEDAYRELSGGEAGFDGFFPAYRRSSG*
Ga0062594_1033197931	3300005093	Soil	PEGLVPAAIGKAIHDEAAYRELSGGEARYDGFFPAYRQPVE*
Ga0066671_110163892	3300005184	Soil	KADALHHFKARFDPEGLVPAAIGKAIHDEAVYRELSGGRVGGFDGFFPAYRRPSG*
Ga0066388_1077525882	3300005332	Tropical Forest Soil	RFDPEGLVDAAVGKAVHDEDAYRELSGGEAGYDGFFPAYRATVPA*
Ga0068868_1011716533	3300005338	Miscanthus Rhizosphere	SLHHFKARFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPSYRRRTP*
Ga0070660_1004082941	3300005339	Corn Rhizosphere	DSLHHFKARFDPEGLVEAALGKAIHDEDAYRELSGGDAGYDGFFPAYRRPSG*
Ga0070668_1013950672	3300005347	Switchgrass Rhizosphere	EGLVEAAVGKAIHDEESYRELTGGETGYEGFFPSYRSRTPN*
Ga0070674_1011337831	3300005356	Miscanthus Rhizosphere	DSLHEFKLRFDPGGEVEAAIGKAIHDEAAYRRLAGPGAGLDGFFPAYRRA*
Ga0070701_101037993	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	ARFDPEGLVEAAVGKAIHDEESYRELTGGETGYEGFFPSYRSRTPN*
Ga0070700_1014332751	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	HFKARFDPEGLVEAAVGKAIHDENTYRRLSGGETGFDGFFPAYRSRTP*
Ga0068867_1018042291	3300005459	Miscanthus Rhizosphere	LHHFKARFDPEGLVPAAVGKAIHDEDAYRELSGGEVGYEGFFPAYRQRVE*
Ga0070704_1002291883	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	ARFDPEGLVEAAVGKAIHDEAAYRELSGGEAGYEGFFPAYRRPSG*
Ga0066654_105736582	3300005587	Soil	ALHHFKARFDPEGLVPAAIGKAIHDEAAYRELSGGRVDGLDGFFPAYRRPTG*
Ga0068856_1001907111	3300005614	Corn Rhizosphere	HFKARFDPDGLVPAAIGKAIHDEERYRELGGDGFDGFFPAYRHRASSVNACS*
Ga0070702_1003617363	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	GLGGKADSLHHFKARFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPAYRSRTP*
Ga0066903_1031950252	3300005764	Tropical Forest Soil	DSLHRFKARFDPEGLVPAAVGKAIHDEAAYRELSGGDAVYDGFFPAYRRRAS*
Ga0066651_100342023	3300006031	Soil	LGGGVGGADDSLLEFKLRFDPGGLIESAVGKAIHDDDAYRKLGGEGFDGFFPAYRRAA*
Ga0066651_101162741	3300006031	Soil	LRFDEGGLIESAVGKAIHDEVRYRELGGEGYDGFFPAYRATVTA*
Ga0070712_1007776412	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EDSLHHFKARFDPEGLVPAAVGKAIHDEDAYRRLSGGSEAVFEGFFPAYRRPSR*
Ga0070712_1012654842	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EDSLHHFKARFDPEGLVPAAVGKAIHDEDAYRRLSGGEASYDGFFPAYRAASVARR*
Ga0074047_119643043	3300006576	Soil	DDSLLEFKLRFDPGGLIESAVGKAIHDEQAYRELAGAGAGLDGFFPAYRRNQATVSA*
Ga0079222_125894902	3300006755	Agricultural Soil	GGVGGARDSLYEFKLRFDPCGEVEAAIGKAIHDEKAYHRLAGPQAGLEGFFPAYRQAARAAT*
Ga0075425_1005101531	3300006854	Populus Rhizosphere	GRGGKQDSLHHFKARFDPEGLVDAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRAETIGTVAP*
Ga0075435_1010534951	3300007076	Populus Rhizosphere	RRFDPGGLVDAAIGKAIHDENAYRRLAGGVASLDRYFPAYRRP*
Ga0105245_100734814	3300009098	Miscanthus Rhizosphere	GGLGGKQDSLHHFKARFDPEGLVDAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRAEAIGTVAP*
Ga0105243_106558221	3300009148	Miscanthus Rhizosphere	LGGKADSLHHFKARFDPEGLVKAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRRASG*
Ga0105241_107751252	3300009174	Corn Rhizosphere	FDPEGLVPAAVGKAIHDADAYRELSGGETGYEGFFPAYRQRVE*
Ga0126313_103469083	3300009840	Serpentine Soil	DPGGGLEAAVGKAIHDEDGYRRLAGPGAGLEGFFPAYRAA*
Ga0126311_100288591	3300010045	Serpentine Soil	RRFDPGGLVDAAVGKAVHDEDAYARLTGGDASLEGFFPAYRATVAP*
Ga0134063_103210882	3300010335	Grasslands Soil	ADDSLLQFKLRFDEGGLIASAVGKAIHDEARCRELGGEGYDGFFPAYRATVTA*
Ga0134127_131769131	3300010399	Terrestrial Soil	DDSLLEFKLRFDEGGLIESAVGKAVHDEDAYRALGGQGFDGFFPAYRRAA*
Ga0120157_10561562	3300011994	Permafrost	LRFNPGGELEMAVGKAIHDEEAYARLVGPEAGLDGFFPAYRATVRA*
Ga0150985_1059500252	3300012212	Avena Fatua Rhizosphere	LGGGVGGREDSLHELKRRFDPGGLVEAAVGKAVHDERAYRRLSGAEGLVGFFPAYRRPDTVAT*
Ga0137372_100991124	3300012350	Vadose Zone Soil	GVGGRRDSLYEFKLRFDPGGELEAAIGKAIHDEQAYRALAGPQAGLDGFFPAYRAPVAKAT*
Ga0137386_112902902	3300012351	Vadose Zone Soil	QRFDPGGVLEAAVGKAVHDEAAYRALAGGDAGLEGYFPAYRAPASTVRA*
Ga0137367_103125631	3300012353	Vadose Zone Soil	RRDSLYEFKLRFDPGGELEAAIGKAIHDEQAYRALAGPQAGLDGFFPAYRAPAAKAT*
Ga0157329_10109801	3300012491	Arabidopsis Rhizosphere	HFKARFDPEGLVEAAVGKAIHDEAAYRDLSGGEAGYDGFFPAYRAASR*
Ga0157319_10023531	3300012497	Arabidopsis Rhizosphere	LYEFKLRFDPCGEVEAAIGKAIHDEEAYHRLAGPQAGLDGFFPAYRQGARAAT*
Ga0157315_10118232	3300012508	Arabidopsis Rhizosphere	DSLHHFKARFDPEGLVPAAVGKAIHDEAAYRDLSGGEAGYHGFFPAYRAASR*
Ga0157327_10237352	3300012512	Arabidopsis Rhizosphere	ADSLHHFKARFDPEGLVPAAVGKAIHDEDAYRELSGGEAGYEGFFPAYRRPSR*
Ga0157352_10942442	3300012519	Unplanted Soil	GGGLGGKEDSLHHFKARFDPEGLVEAAVGKAIHDEAAYRDLSGGEAGYDGFFPAYRAASR
Ga0157306_100053661	3300012912	Soil	HHFKARFDPEGLVDAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRAEAIGTVAP*
Ga0164300_109713731	3300012951	Soil	EFKLRFDPGGVLEMAVGKVIHDEDGYRALGGAGTEGFFPAYRRAASTVRA*
Ga0164299_113160221	3300012958	Soil	DSLHHFKARFDPEGLVEAAVGKAIHDEAAYRELSGGEAGYEGFFPAYRRSSG*
Ga0164301_112501692	3300012960	Soil	LVPAAVGKALHDEDAYRELSGGRFAGYAGFFPAYRHRVE*
Ga0164304_115623221	3300012986	Soil	LGGKEDSLHHFKARFDPEGLVPAAVGKAIHDEDAYRRLSGGSEVVFEGFFPAYRRPSR*
Ga0164306_102910782	3300012988	Soil	LGGGLGGKADSLHHFKARFDPDGLVPAAVGKAIHDEDAYRRLSGGSEVAFEGFFPAYRRPSR*
Ga0164306_111518692	3300012988	Soil	GGGVGGADDSLLQFKLRFDEGGLIESAVGKAIHDDNAYRRLGGKGFEGFFPAYRRATDA*
Ga0164305_115041072	3300012989	Soil	GLGGKADSLHHFKARFDPEGLVEAAVGKAIHDEDAYRELSGGEAGYEGFFPAYRRSSG*
Ga0157378_103535931	3300013297	Miscanthus Rhizosphere	HFKARFDPEGQVGAAVGKAIHDENTYRRLSGGETGFDGFFPAYRSHSRTP*
Ga0157372_102457894	3300013307	Corn Rhizosphere	HHFKARFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPAYRSRTP*
Ga0120149_10847401	3300014058	Permafrost	EFKLRFDPGGELEMAVGKAIHDEEAYARLAGPEAGLDGFFPAYRATVRA*
Ga0134078_106827162	3300014157	Grasslands Soil	LLQFKFRFDEGGLLESTVGKGIQDEQAHRALGGEGFDGYFPAYRRSP*
Ga0157377_108321391	3300014745	Miscanthus Rhizosphere	FDPEGLVPAAVGKAIHDEDAYRELSGGEVGYEGFFPAYRQRVE*
Ga0132258_123862431	3300015371	Arabidopsis Rhizosphere	ARDSLYEFKLRFDPGGEVEAAIGKAIHDEEAYRRLAGPQAGLAGFFPAYRQAARTAT*
Ga0187786_101784873	3300017944	Tropical Peatland	ADDSLLEFKLRFDEGGLIESAVGKAIHDEACYRDLGGEGFEGFFPAYRAAS
Ga0187788_102351461	3300018032	Tropical Peatland	DDSLLEFKLRFDEGGLIESAVGKAIHDEACYRDLGGEGSEGFFPAYRAAS
Ga0184617_10631193	3300018066	Groundwater Sediment	KRDSLLEFKLRFDPGGELEMAVGKAIHDEKAYVELAGPKPGLEGFFPAYRAAGSRDDR
Ga0193700_10694451	3300019873	Soil	LRFDPGGELEMAVGKAIHDEDAYRELAGRPAGLDGFFPAYRAGSRTTAEGRPGSGS
Ga0222622_100920331	3300022756	Groundwater Sediment	FKLRFDPGGELEMAVGKAIHDEEAYRGLAGADAGVDGFFPAYRATVRA
Ga0247797_10409001	3300023057	Soil	GKQDSLHHFKARFDPEGLVDAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRAEAIGTVAP
Ga0247677_10513981	3300024245	Soil	LGGKEDSLHHFKARFDPEGLVPAAVGKAIHDEDAYRRLSGAEASFAGFFPAYRRVRHN
Ga0207693_107241081	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KARFDPEGLVPAAVGKAIHDEDAYRRLSGGEASYDGFFPAYRAASVARR
Ga0207657_105618782	3300025919	Corn Rhizosphere	KARFDPEGLVPAAVGKAIHDEDAYRELSGGEVGYEGFFPAYRQRVE
Ga0207652_119019092	3300025921	Corn Rhizosphere	RFDPEGLVPAAVGKAIHDEDAYRELSGGEAGYEGFFPAYRQRVE
Ga0207664_109258731	3300025929	Agricultural Soil	GLVPAAVGKAIHDEDAYRRLSGGSEVAFEGFFPAYRRPSR
Ga0207686_105566261	3300025934	Miscanthus Rhizosphere	HHFKARFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPAYRSRTP
Ga0207709_105436742	3300025935	Miscanthus Rhizosphere	LGGGLGGKADSLHHFKSRFDPEGLVEAAVGKAIHDEDAYRELSGEADYEGFFPAYRRPSG
Ga0207709_108753853	3300025935	Miscanthus Rhizosphere	GGKADSLHHFKARFDPEGLVEAAVGKAIHDEESYRELTGGETGYEGFFPSYRSRTPN
Ga0207704_115176202	3300025938	Miscanthus Rhizosphere	SLHHFKTRFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPSYRSRTP
Ga0207668_111360123	3300025972	Switchgrass Rhizosphere	GGLGVKADSLHHFKARFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPAYRSRTP
Ga0207677_108319862	3300026023	Miscanthus Rhizosphere	SLHHFKARFDPEGLVEAAVGKAIHDEAAYRELSGGEAGYEGFFPAYRRPSG
Ga0207708_100341655	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	GGGLGGKADSLHHFKARFDPEGLVEAAVGKAIHDENTYRRLSGGETGFDGFFPAYRSRTP
Ga0207683_101064441	3300026121	Miscanthus Rhizosphere	SLHHFKARFDPEGLVPAAVGKAIHDEDAYRELSGGEVGYEGFFPAYRQRVE
Ga0207683_104305973	3300026121	Miscanthus Rhizosphere	HFKARFDPEGLVEAAVGKAIHDEDTYRRLSGGETGFDGFFPAYRSRTP
Ga0268266_106449562	3300028379	Switchgrass Rhizosphere	LHHFKARFDPEGLVPAAVGKAIHDEDAYRELSGRAVGYEGFFPAYRQRVE
Ga0247822_113559941	3300028592	Soil	LRFDPGGEVEAGIGKAIHDETAYRRLAGPGAGLDGFFPAYRRA
Ga0307293_102271632	3300028711	Soil	PEGLVPAAVGKAIHDEDAYRELSGGDTAYEGFFPAYRRSNG
Ga0307313_100849081	3300028715	Soil	KLRIDPGGEVEAAIGKAIHDREAYRRLAGPEAGVDGFFPAYRRP
Ga0307318_102603721	3300028744	Soil	GGGLGGKEDSLHHFKARFDPEGLVDAAVGKAIHDEDAYRRLSGGKAGYDGFFPAYRDPSR
Ga0307282_106715651	3300028784	Soil	GGSDDSLLQFKLRFDEGGLIESAVGKAIHDNERYRELGGAGFDGYFPSYRRAA
Ga0307323_102797571	3300028787	Soil	GRRDSLFDFKLHFDPGGELEMAVGKAIHDEEAYRGLAGADAGVDGFFPAYRATVRA
Ga0307323_103003522	3300028787	Soil	GGVGGADDSLLQFKLRFDEGGLIESAVGKAIHEEARYRELGGAGYEGFFPVYRAPR
Ga0307299_100876013	3300028793	Soil	FDPGGELEMAVGKAIHDDSAYRALAGAQAGLEGFFPAYRAAGSRDDR
Ga0307305_100984372	3300028807	Soil	GADDSLLQFKLRFDEGGLIESAVGKAIHDNERYRELGGSGFDGYFPSYRRAA
Ga0307305_103664722	3300028807	Soil	PEGLVPAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRRSNG
Ga0307296_102080433	3300028819	Soil	DSLLQFKLRFDEGGLIESAVGKAIHDNERYRELGGEDFEGFFPAYRSRG
Ga0307312_111774821	3300028828	Soil	GGGLGGKEDSLHHFKARFDPEGLVDAAVGKAIHDEDAYRSLSGGEAGLEGYFPAYRAPSG
Ga0307289_102386753	3300028875	Soil	KLRFDPGGELEMAVGKAIHDDSAYRALAGAQAGLEGFFPAYRAAGSRDDR
Ga0307308_103472852	3300028884	Soil	DSLFEFKLRFDPGGELEMAVGKAIHDDGAYRALAGPQAGLEGFFPAYRAAGSRDDR
Ga0247826_102904661	3300030336	Soil	ARFDPEGLVEAAVGKAIHDEDAYRELSGGEAGYDGFFPAYRRPSG
Ga0310886_103643252	3300031562	Soil	HFKARFDPEGLVDAAVGKAIHDEDAYRRLSGGSEVAFEGFFPAYRRPSR
Ga0318546_112730701	3300031771	Soil	RRFDPGGLVEAAVGKAVHDEVAYGKLTGGAAGLGGFFPAYRR
Ga0307409_1012913231	3300031995	Rhizosphere	FDPEGLLDAAVGKAIHDDAAYRELSGGEAGYDGFFPAYRAASL
Ga0318562_102497193	3300032008	Soil	VGGASDSLHEYKRRFDPGGLVEAAVGKAVHDEVAYGKLTGGAAGLGGFFPAYRR
Ga0335084_117980881	3300033004	Soil	GGGVGGADDSLLQFKLRFDEGGLIESAVGKTVHDETRYRDLGGAGFEGFFPAYRRPGRE
Ga0335077_118297391	3300033158	Soil	VGGPHDSLLEFKLRFDPGGLIESAVGKAIHDEAAYRELAGPDAGLDGFFPAYRARQA
Ga0310810_112784792	3300033412	Soil	DSLHHFKARFDPEGLVPAAVGKAIHDEDAYRELSGGATGYDGFFPAYRRPTG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103653

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences