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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103640 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 46 residues |
| Representative Sequence | AQLEATFRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEAPKS |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 3.70 % |
| % of genes near scaffold ends (potentially truncated) | 26.73 % |
| % of genes from short scaffolds (< 2000 bps) | 24.75 % |
| Associated GOLD sequencing projects | 91 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.33 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (78.218 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.871 % of family members) |
| Environment Ontology (ENVO) | Unclassified (19.802 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.554 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 10.96% Coil/Unstructured: 89.04% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.33 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF00106 | adh_short | 5.94 |
| PF00561 | Abhydrolase_1 | 4.95 |
| PF00903 | Glyoxalase | 2.97 |
| PF00581 | Rhodanese | 1.98 |
| PF01112 | Asparaginase_2 | 1.98 |
| PF08240 | ADH_N | 1.98 |
| PF13193 | AMP-binding_C | 1.98 |
| PF06150 | ChaB | 0.99 |
| PF07732 | Cu-oxidase_3 | 0.99 |
| PF13517 | FG-GAP_3 | 0.99 |
| PF04203 | Sortase | 0.99 |
| PF07969 | Amidohydro_3 | 0.99 |
| PF00654 | Voltage_CLC | 0.99 |
| PF13650 | Asp_protease_2 | 0.99 |
| PF14534 | DUF4440 | 0.99 |
| PF00691 | OmpA | 0.99 |
| PF14602 | Hexapep_2 | 0.99 |
| PF00781 | DAGK_cat | 0.99 |
| PF12697 | Abhydrolase_6 | 0.99 |
| PF16694 | Cytochrome_P460 | 0.99 |
| PF01515 | PTA_PTB | 0.99 |
| PF00709 | Adenylsucc_synt | 0.99 |
| PF00589 | Phage_integrase | 0.99 |
| PF14903 | WG_beta_rep | 0.99 |
| PF03475 | 3-alpha | 0.99 |
| PF07885 | Ion_trans_2 | 0.99 |
| PF02652 | Lactate_perm | 0.99 |
| PF01738 | DLH | 0.99 |
| PF00174 | Oxidored_molyb | 0.99 |
| PF13011 | LZ_Tnp_IS481 | 0.99 |
| PF01979 | Amidohydro_1 | 0.99 |
| PF13432 | TPR_16 | 0.99 |
| PF11746 | DUF3303 | 0.99 |
| PF00190 | Cupin_1 | 0.99 |
| PF00478 | IMPDH | 0.99 |
| PF00206 | Lyase_1 | 0.99 |
| PF00989 | PAS | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG1446 | Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily | Amino acid transport and metabolism [E] | 1.98 |
| COG1597 | Phosphatidylglycerol kinase, diacylglycerol kinase family | Lipid transport and metabolism [I] | 1.98 |
| COG0038 | H+/Cl- antiporter ClcA | Inorganic ion transport and metabolism [P] | 0.99 |
| COG0104 | Adenylosuccinate synthase | Nucleotide transport and metabolism [F] | 0.99 |
| COG0280 | Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase) | Energy production and conversion [C] | 0.99 |
| COG1620 | L-lactate permease | Energy production and conversion [C] | 0.99 |
| COG2041 | Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases | Energy production and conversion [C] | 0.99 |
| COG2132 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) | Cell cycle control, cell division, chromosome partitioning [D] | 0.99 |
| COG2258 | N-hydroxylaminopurine reductase YiiM, contains MOSC domain | Defense mechanisms [V] | 0.99 |
| COG3764 | Sortase (surface protein transpeptidase) | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
| COG3915 | Uncharacterized conserved protein | Function unknown [S] | 0.99 |
| COG4572 | Cation transport regulator ChaB | Inorganic ion transport and metabolism [P] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 78.22 % |
| All Organisms | root | All Organisms | 21.78 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005536|Ga0070697_101227836 | All Organisms → cellular organisms → Bacteria | 668 | Open in IMG/M |
| 3300009665|Ga0116135_1204799 | Not Available | 755 | Open in IMG/M |
| 3300010358|Ga0126370_12585763 | All Organisms → cellular organisms → Bacteria | 507 | Open in IMG/M |
| 3300010360|Ga0126372_12905096 | All Organisms → cellular organisms → Bacteria | 531 | Open in IMG/M |
| 3300010371|Ga0134125_12108600 | All Organisms → cellular organisms → Bacteria | 613 | Open in IMG/M |
| 3300010398|Ga0126383_12981965 | All Organisms → cellular organisms → Bacteria | 553 | Open in IMG/M |
| 3300011088|Ga0138576_1207039 | All Organisms → cellular organisms → Bacteria | 929 | Open in IMG/M |
| 3300012202|Ga0137363_10860903 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 769 | Open in IMG/M |
| 3300014159|Ga0181530_10596075 | All Organisms → cellular organisms → Bacteria | 541 | Open in IMG/M |
| 3300016422|Ga0182039_10129453 | All Organisms → cellular organisms → Bacteria | 1919 | Open in IMG/M |
| 3300017943|Ga0187819_10763776 | All Organisms → cellular organisms → Bacteria | 543 | Open in IMG/M |
| 3300020581|Ga0210399_10525923 | All Organisms → cellular organisms → Bacteria | 982 | Open in IMG/M |
| 3300022515|Ga0224546_1008498 | All Organisms → cellular organisms → Bacteria | 762 | Open in IMG/M |
| 3300025911|Ga0207654_10577759 | All Organisms → cellular organisms → Bacteria | 800 | Open in IMG/M |
| 3300026331|Ga0209267_1212826 | Not Available | 727 | Open in IMG/M |
| 3300027376|Ga0209004_1015743 | All Organisms → cellular organisms → Bacteria | 1168 | Open in IMG/M |
| 3300027905|Ga0209415_10043991 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 5950 | Open in IMG/M |
| 3300027911|Ga0209698_10677666 | All Organisms → cellular organisms → Bacteria | 786 | Open in IMG/M |
| 3300028780|Ga0302225_10068628 | Not Available | 1744 | Open in IMG/M |
| 3300028806|Ga0302221_10020979 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui | 3211 | Open in IMG/M |
| 3300030841|Ga0075384_10651250 | All Organisms → cellular organisms → Bacteria | 524 | Open in IMG/M |
| 3300031128|Ga0170823_15883884 | All Organisms → cellular organisms → Bacteria | 611 | Open in IMG/M |
| 3300031564|Ga0318573_10252703 | Not Available | 940 | Open in IMG/M |
| 3300031897|Ga0318520_11010766 | All Organisms → cellular organisms → Bacteria | 525 | Open in IMG/M |
| 3300032035|Ga0310911_10196943 | All Organisms → cellular organisms → Bacteria | 1145 | Open in IMG/M |
| 3300032180|Ga0307471_101281781 | All Organisms → cellular organisms → Bacteria | 895 | Open in IMG/M |
| 3300033433|Ga0326726_10656494 | Not Available | 1011 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.87% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 6.93% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 6.93% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 6.93% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 5.94% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 4.95% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.95% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 4.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.96% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 2.97% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.97% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 2.97% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 1.98% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 1.98% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.98% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.98% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 1.98% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.98% |
| Watersheds | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds | 0.99% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.99% |
| Freshwater Wetlands | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands | 0.99% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.99% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.99% |
| Rice Paddy Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil | 0.99% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.99% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.99% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.99% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.99% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005899 | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006796 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 | Environmental | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009521 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG | Environmental | Open in IMG/M |
| 3300009523 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG | Environmental | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009665 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300011088 | Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2) | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012964 | Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014159 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300017821 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2 | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017933 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017988 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG | Environmental | Open in IMG/M |
| 3300017999 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG | Environmental | Open in IMG/M |
| 3300018014 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40 | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300018088 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG | Environmental | Open in IMG/M |
| 3300018089 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300020070 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300021938 | Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - EE:C (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022515 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5 | Environmental | Open in IMG/M |
| 3300025507 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026326 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes) | Environmental | Open in IMG/M |
| 3300026331 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes) | Environmental | Open in IMG/M |
| 3300026355 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A | Environmental | Open in IMG/M |
| 3300026542 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes) | Environmental | Open in IMG/M |
| 3300027376 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027591 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300028780 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300028806 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1 | Environmental | Open in IMG/M |
| 3300030056 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3 | Environmental | Open in IMG/M |
| 3300030841 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030879 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031128 | Oak Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031258 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0066388_1063166802 | 3300005332 | Tropical Forest Soil | FKASAQLEASFRVPSIDFTFKTDPLETSSTDFVVMGSEVNGKYYEAPKG* |
| Ga0070713_1001814984 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | FEGFKANAQLEATLRVPSIDFTFKTDPLDTSKCDFAVMGTEVNGKYYEPAKS* |
| Ga0070684_1005924954 | 3300005535 | Corn Rhizosphere | KANAQLEATLRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEGTKS* |
| Ga0070697_1012278361 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | YRFEGFKAGAQLEATIRVPSIDFTFKTDPLKRSKCDFAVMGEEVNGKYYEAAKG* |
| Ga0070761_102009292 | 3300005591 | Soil | IRVPSIDFTFKTDELEMSSSDFAVMGTEVNGKYYEAAKA* |
| Ga0070762_109946481 | 3300005602 | Soil | GFKASAQLEATFRVPAINFTFKTDPLETSKSSFAVMGTEVNGRYYEAAKA* |
| Ga0075271_101138522 | 3300005899 | Rice Paddy Soil | VPSIDFVFKTDPLETSKTDFAVMGEEVNGKYYEAAKA* |
| Ga0075030_1010641841 | 3300006162 | Watersheds | LQAAVRVPSIEFTFKTDPIEASICDFAVMGTEVNGKYYEPDKH* |
| Ga0070712_1013571501 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | AQLEATFRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEAPKS* |
| Ga0066665_116623171 | 3300006796 | Soil | TMRVPSLDFTFKTDPMETSKCDFAVMGSEVNGKYYER* |
| Ga0075433_118622852 | 3300006852 | Populus Rhizosphere | VPSIGFTFNTDPLETSKSDFAVMGSEVNGKYSHAAKG* |
| Ga0075424_1007233331 | 3300006904 | Populus Rhizosphere | PSIDFTFKTDPLETSKTDFAVMGSEVNGKYYEAAKS* |
| Ga0099792_102655572 | 3300009143 | Vadose Zone Soil | LLSSHPTEATIRVPSIDFTFKTDPLESFKCDFAVMGEEVNGKYYEAAKAEA* |
| Ga0116222_13156892 | 3300009521 | Peatlands Soil | VRVPLIDFTFKTDPLETSRCDFAVMGSEVNGKYYEA* |
| Ga0116221_11772521 | 3300009523 | Peatlands Soil | RVPLIDFTFKTDPLETSRCDFAVMGSEVNGKYYEA* |
| Ga0105237_109278743 | 3300009545 | Corn Rhizosphere | TLRVPSIDFTFKTDPLDQSKCDFAVMGTEVNGKYHEGTKS* |
| Ga0116135_12047992 | 3300009665 | Peatland | EGFKAKAQLEAAVRVPLIDFTFKTDPLETSNCDFAVMGDEANGRYYEASQR* |
| Ga0116135_12692693 | 3300009665 | Peatland | LEAAIRVPSIDFAFKTDPLEASKCDFAVMGSEVNGKYYEATKSGAGQ* |
| Ga0126384_109886521 | 3300010046 | Tropical Forest Soil | LEASVRVPSIDFAFKTDPLDTSKCDFAVMGEEVNGRYYEPSKT* |
| Ga0074045_108653552 | 3300010341 | Bog Forest Soil | TIRVPSIGFTFKTDPLDASKCDFAVMGTEVNGKYYEAAKG* |
| Ga0126370_106928152 | 3300010358 | Tropical Forest Soil | VPSIDFAFKTDPLDTSKCDFAVMGEEVNGRYYEPSKT* |
| Ga0126370_125857632 | 3300010358 | Tropical Forest Soil | EDPMRQYRFEGFKAVAELEAKVRVPSLDFTFKTDRLETSRADFAVMGTEVNGRYYP* |
| Ga0126372_129050962 | 3300010360 | Tropical Forest Soil | DPMRQYRFEGFKAVAQLEAEVRVPSIDFTFKTDPLETSRADFAVMGTEVNGRYYP* |
| Ga0134125_121086001 | 3300010371 | Terrestrial Soil | DPLRQFRFEGFKANAQLEATLRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEASKS* |
| Ga0126383_129819652 | 3300010398 | Tropical Forest Soil | YRFEGFKAVAELEAEVRVPSIDFSFKTDPLETSRADFAVMGTEVNGRYYP* |
| Ga0138576_12070392 | 3300011088 | Peatlands Soil | RQYRFEGFKASAQLEAAVRVPSIDFSFKTDPLENSKCDFAVVGIEVNGKYYESAGR* |
| Ga0137363_108609031 | 3300012202 | Vadose Zone Soil | VPSIDFTFKTDPLESFKCDFAVMGEEVNGKYYEEAKG* |
| Ga0137413_102473611 | 3300012924 | Vadose Zone Soil | RFEGFKASAHLEAAIRVASIDFTFKTDPLESSKSDFAVMGSEVNGKYYEAARS* |
| Ga0137416_119430121 | 3300012927 | Vadose Zone Soil | LEAMIRVPSIDFTFKTDPMETSNCDFAAMGSEVNGKYYEAAKA* |
| Ga0153916_102560651 | 3300012964 | Freshwater Wetlands | PSTGFTYKTDPLATSKCDFAVMGTEVNGKYYQPKT* |
| Ga0164306_103294501 | 3300012988 | Soil | IDFTFKTDPLETSKCDFAVMGYEVNGKYYEPSKS* |
| Ga0157374_115454213 | 3300013296 | Miscanthus Rhizosphere | PSIDFTFKTDPLDQSKCDFAVMGTEVNGKYYEGTKS* |
| Ga0181530_105960751 | 3300014159 | Bog | RFEGFKATAQLEAVVNVPSIDFAFKTDPLETSKADFAVMGNEVNGKYYEEQKG* |
| Ga0182036_105033681 | 3300016270 | Soil | ELEAEVRVPSINFTFKTDTLETSRADFAVMGTEVNGRYYP |
| Ga0182035_117671001 | 3300016341 | Soil | GFKATARLEATVRVSSIDFTFKTDPLETSRCDFAVMGTEVNAKYYE |
| Ga0182039_101294531 | 3300016422 | Soil | MRQYRFEGFKAVAELEAEVRVPSIDFTFKTDPLEASRADFAVMGTEVNGRYYP |
| Ga0182039_118379962 | 3300016422 | Soil | GFKADAQLEASIRVPSIDFTFKTDPLDTSKCDFAVMGTEVNGKYYEAKKG |
| Ga0187812_12680441 | 3300017821 | Freshwater Sediment | MDFTFKTDPLEASKCDFAVMGNEVNGKYYEAAQGPL |
| Ga0187802_100926411 | 3300017822 | Freshwater Sediment | LEATIRVPSIDFTFKTDPLEASKSDFAVMGTEVNGKYYEATKGSP |
| Ga0187801_102407802 | 3300017933 | Freshwater Sediment | AQLEANVRVPSIDFSFKTDSLETSRSDFAVMGSEVNGRYYEERG |
| Ga0187801_104388791 | 3300017933 | Freshwater Sediment | RIRVPSIDFVFKTDSLETSKCDFAVMGTEINGRYYEATKAEA |
| Ga0187819_104275192 | 3300017943 | Freshwater Sediment | IRVPSIDFTFKTDPLEASKCDFAVMGNEVNGKYYEAAQGPR |
| Ga0187819_107637761 | 3300017943 | Freshwater Sediment | YRFQGFKASAQLEARIRVPSIDFVFKTDSLETSKCDFAVMGTEINGRYYEATKG |
| Ga0187817_101185281 | 3300017955 | Freshwater Sediment | DFTFKTDPLEASKSDFAVMGTEVNGKYYEATKGSP |
| Ga0181520_105697952 | 3300017988 | Bog | ATVRVPSIDFSFKTDSLETSKCDFAVIGSEVNGRYYGERG |
| Ga0187767_102446491 | 3300017999 | Tropical Peatland | RLEATVRVPSIDFMFKTDPLETSKSDFGVMGTESNGKYYETANG |
| Ga0187860_13643081 | 3300018014 | Peatland | AQIEAVVRVPSIDFTFKTDPLEASKCDFAVMGSEANGKYYETADLVSR |
| Ga0187772_111346822 | 3300018085 | Tropical Peatland | EAAVRVPSIGFEFRTDAIETSKADFAVMGEEVNGKYYS |
| Ga0187769_114271811 | 3300018086 | Tropical Peatland | LEASVRVPSIDFTFKTDPLEKSSSDFAVVGTEVNGKYYQS |
| Ga0187771_102255323 | 3300018088 | Tropical Peatland | ATLRVPSIGFEFKTDALETSKADFAVMGEEVYGKYYG |
| Ga0187771_116506082 | 3300018088 | Tropical Peatland | AQLEASVRVPSIDFTFKTDPLEKSSSDFAVVGTEVNGKYYQG |
| Ga0187774_108580112 | 3300018089 | Tropical Peatland | SIDFTFKTDPLETSKADFAVMGEEANGKYYETAKG |
| Ga0187770_106300172 | 3300018090 | Tropical Peatland | MRVPSIGFEFKTHALETSKADFAVMGEEVNGKCYG |
| Ga0206356_114463221 | 3300020070 | Corn, Switchgrass And Miscanthus Rhizosphere | SIDFTFKTDPLETSKCDFAVMGTEVNGKYYEGTKS |
| Ga0206352_104494244 | 3300020078 | Corn, Switchgrass And Miscanthus Rhizosphere | GFKANAQLEATLRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEGTKS |
| Ga0210399_105259231 | 3300020581 | Soil | YRFEGFKATAQLEATVRVPSIDFTFKTDLLETSKCDFAVMGEEVNGRYYEASHG |
| Ga0210395_102151911 | 3300020582 | Soil | TIRVPEIGFTFTTDPLATSTCDFAVIGNAVNGKYYEAAR |
| Ga0179596_105741631 | 3300021086 | Vadose Zone Soil | LLSSHPTEATIRVPSIDFTFKTDPLESFKCDFAVMGEEVNGKYYEAAKG |
| Ga0210396_107292241 | 3300021180 | Soil | AQLEATVRVPSIDFTFKTDPLEASKCDFAVMGTEVNGKYYEQARG |
| Ga0210390_102039664 | 3300021474 | Soil | FEGFKSAAQLEATVRVPSIDFTFKTDPLEASKCDFAVMGTEVNGKYYEQARG |
| Ga0210398_103870331 | 3300021477 | Soil | KAAAQLEATIRVPSIDFTFKTDELEMSSSDFAVMGTEVNGKYYEAAKA |
| Ga0210409_106522272 | 3300021559 | Soil | VKAAAQLEVTIRVPSIDFTFKTDPLETSHCDFAVMGTEGNGKYYVS |
| Ga0213847_12099331 | 3300021938 | Watersheds | RFQGFKATARLQAAVRVPSIEFTFKTDPLEASTCDFAVMGAEVNGKYYEPDKQ |
| Ga0224546_10084982 | 3300022515 | Soil | MQQHRFEGFLAREQLEATVRVPLIDFTFKTDPQKTSKCDFAVMGDGANGKY |
| Ga0208188_10631171 | 3300025507 | Peatland | FEGFKARAQLEATVRVPVIDFTFKTDPLETSQCDFAVMGTEVNGRYYEASNG |
| Ga0207654_105777593 | 3300025911 | Corn Rhizosphere | PMRQYRFEGFKANTQLEATLRVPSIDFTFKTDPLDQSKCDFAVMGTEVNGKYYEGTKS |
| Ga0207677_107407981 | 3300026023 | Miscanthus Rhizosphere | EATLRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEGTKS |
| Ga0209801_13338092 | 3300026326 | Soil | ATFRVPSIDFIFKTDPLETSTSDFAVMGFEANGKYYGSVKS |
| Ga0209267_12128261 | 3300026331 | Soil | RFEGFKAIAKLEVSVRVPSIDFAFKTDPLDMSKCDFAVIGEEVNGKYYEPSKS |
| Ga0257149_10317631 | 3300026355 | Soil | EATIRVPSIDFTFKTDPLESFKCDFAVMGEEVNGKYYEAAKG |
| Ga0209805_12481252 | 3300026542 | Soil | EGLQAAAQLEASFRVPSTGFTFKTDPLETSKTDFAVIGTEVNGKYYDAAKS |
| Ga0209004_10157431 | 3300027376 | Forest Soil | RQYRFEGFKANAQLEATLRVPSIDFTFKTDPLDTSKCDFAVMGTEVNGKYYEVPKS |
| Ga0209733_10977991 | 3300027591 | Forest Soil | KASAQLEATIRVPSIDFTFKTDPMETSKCDFAVMGSEVNGKYYEASKG |
| Ga0209415_100439918 | 3300027905 | Peatlands Soil | QQYRFEGFTARAQLEATVRVPLIDFTFKTDPLETSRCDFAVMGSEVNGKYYEA |
| Ga0209698_106776661 | 3300027911 | Watersheds | YRFEGVKAVAQLEATIRVPSIGFTFKTDPLDTSQCDFAVMGSEVNGQYYVS |
| Ga0302225_100686282 | 3300028780 | Palsa | QYRFEGFKAGAQLEATIRVPSIDFIFKTDPLENSQCDFAEMGDEVNGKYYEAAKGP |
| Ga0302221_100209791 | 3300028806 | Palsa | PARQYRFEGFRASAQLEATFRVPGFDFTFKTDPLDTSKSSFAVMGTEVNGKYYEAAKA |
| Ga0302181_104605321 | 3300030056 | Palsa | KAGAQLEATIRVPSIDFIFKTDPLENSQCDFAEMGDEVNGKYYEAAKGP |
| Ga0075384_106512502 | 3300030841 | Soil | QFRFEGFKANAQLEATFRVPSIDFTFKTDPLDMSKCDFAVMGTEVNGKYYEGPKS |
| Ga0265765_10505792 | 3300030879 | Soil | EATTRVPLIDFTFKTDPLETSKCDFAVMGDEVNGRYYEPSRG |
| Ga0170823_158838841 | 3300031128 | Forest Soil | PLHQFKFEGFKANAQLEATLQVPSIDFTFKTDPLETSKCDFAVMGTEANGKYYESPKS |
| Ga0302318_101622411 | 3300031258 | Bog | LEAAIRVPSIDFAFKTDPLEASKCDFAVMGSEVNGKYYEAGKSGAGQ |
| Ga0318573_102527032 | 3300031564 | Soil | DSVRQYRFEGFKAVAELEAEVRVPSIDFTFKTDPLETSRADFAVMGTEVNGRYYP |
| Ga0318555_106724582 | 3300031640 | Soil | AELEAEIRVPSIDFTFKTDPLETSRADFAVMGTEVNGRYYP |
| Ga0318520_110107662 | 3300031897 | Soil | MRQYRFEGFKAVAELEAEIRVPSIDFTFKTDPLETSRADFAVMGTEVNGRYYP |
| Ga0310916_108411871 | 3300031942 | Soil | EGFKAVAELEAEVRVPSIDFTFKTDRLETSRADFAVMGTEVNGRYYP |
| Ga0310911_101969432 | 3300032035 | Soil | DPMRQYRFEGFKAVAELEAEVRVPSINFTFKTDPLETSRADFAVMGTEVNGRYYP |
| Ga0306924_105149173 | 3300032076 | Soil | FEGFKAVAELEAEIRVPSIDFTFKTDPLETSRADFAVMGTEVNGRYYP |
| Ga0311301_118187891 | 3300032160 | Peatlands Soil | RFEGFKASAQLEATFRVPSIDFTFKTDPLETSACEFAVMGDEVNGKYYEA |
| Ga0307471_1012817812 | 3300032180 | Hardwood Forest Soil | QFRFEGFKASAQLEATFRVPSIDFTFKTDPLETSKTDFAVMGTEVNGKYYEAKS |
| Ga0307472_1005442022 | 3300032205 | Hardwood Forest Soil | SIDFAFKTEPLDTSKCDFAVMGEEVNGKYYEPSKG |
| Ga0306920_1002572321 | 3300032261 | Soil | AVAELEAEVRVPSINFTFKTDPLETSRADFAVMGTEVNGRYYP |
| Ga0335079_101889582 | 3300032783 | Soil | KAVAQLEAEVRVPSIDSTFKTDPLETSKADFAVIGTEVNGKYYS |
| Ga0335078_106446101 | 3300032805 | Soil | EAVVRVPSIGFEFKTDALETSKAGFAVMGEEVNGRYYG |
| Ga0335083_101253813 | 3300032954 | Soil | VQLEAIVHVPSIGFEFKTDALEKSKAEFTVMGEEVNGKCYG |
| Ga0335076_100020141 | 3300032955 | Soil | RFEGFRAIAQLEASVRVPSIDFTFKTDPLDESSAEFAVMGTEVNGRYYQR |
| Ga0335084_122277542 | 3300033004 | Soil | EATFRVPSIDFVFKTDPIETSKSDFAVIGDEANGKYYDAAKG |
| Ga0335073_110261481 | 3300033134 | Soil | GRTASAQLEASVRVPSIDFSFRTDPLENSKCDFAVMGTEMNGKYYETAGR |
| Ga0335077_111461892 | 3300033158 | Soil | AQLQATVRVPSIGFEFETDALETSKADFAVMGEEVNGKYYG |
| Ga0326726_101238281 | 3300033433 | Peat Soil | SAQLEATFRVPSIDFTFKTDPLEKSSCDFAVMGDEVNGKYYEAAKG |
| Ga0326726_106564941 | 3300033433 | Peat Soil | RQYRFDGFKASAQMEATLRVPSIDFTFKTDPLETSKTDFAVMGSEINGKYYEAAKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |