Metagenome Family F103639

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103639
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	47 residues
Representative Sequence	KQKIAGAQQAAILRLKQLENSPDHHHELIALTDALTALKILGETIWAE
Number of Associated Samples	70
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	17.82 %
% of genes from short scaffolds (< 2000 bps)	15.84 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (84.158 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (54.455 % of family members)
Environment Ontology (ENVO)	Unclassified (53.465 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.327 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.63% β-sheet: 0.00% Coil/Unstructured: 47.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00072	Response_reg	7.92
PF02518	HATPase_c	2.97
PF07238	PilZ	1.98
PF07589	PEP-CTERM	1.98
PF12697	Abhydrolase_6	0.99
PF03544	TonB_C	0.99
PF01609	DDE_Tnp_1	0.99
PF01904	DUF72	0.99
PF02517	Rce1-like	0.99
PF02744	GalP_UDP_tr_C	0.99
PF00872	Transposase_mut	0.99
PF06262	Zincin_1	0.99
PF00589	Phage_integrase	0.99
PF04679	DNA_ligase_A_C	0.99
PF08332	CaMKII_AD	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.99
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.99
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.99
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.99
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.99
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.99
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.99
COG4875	Protein kinase association domain CaMKII_AD, NTF2-like superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.99
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.99
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
All Organisms	root	All Organisms	15.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
cellular organisms	root	All Organisms → cellular organisms	14.85 %
Viruses	superkingdom	All Organisms → Viruses	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	14.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005186\|Ga0066676_10040143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2604	Open in IMG/M
3300005468\|Ga0070707_100355588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1423	Open in IMG/M
3300005518\|Ga0070699_102172959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300009137\|Ga0066709_102829964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300011270\|Ga0137391_10289373	All Organisms → cellular organisms → Bacteria → Acidobacteria	1415	Open in IMG/M
3300012205\|Ga0137362_11045530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300012206\|Ga0137380_10264383	Not Available	1548	Open in IMG/M
3300012208\|Ga0137376_10157560	All Organisms → cellular organisms → Bacteria → Acidobacteria	1955	Open in IMG/M
3300012361\|Ga0137360_10056523	Not Available	2850	Open in IMG/M
3300012917\|Ga0137395_10438166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	938	Open in IMG/M
3300012922\|Ga0137394_10514724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1016	Open in IMG/M
3300012925\|Ga0137419_10626709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300012929\|Ga0137404_11253071	Not Available	683	Open in IMG/M
3300012930\|Ga0137407_10038717	All Organisms → cellular organisms → Bacteria → Acidobacteria	3789	Open in IMG/M
3300019887\|Ga0193729_1206275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300025910\|Ga0207684_10250410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1528	Open in IMG/M
3300026532\|Ga0209160_1073146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1841	Open in IMG/M
3300026557\|Ga0179587_10300663	All Organisms → Viruses → Predicted Viral	1034	Open in IMG/M
3300032180\|Ga0307471_103114301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.14%
Loam	Environmental → Terrestrial → Soil → Loam	13.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	54.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD1_06490360	2170459024	Grass Soil	AQATKNNADHHHELIALTDALTALKILGETNWAESR
JGI1027J12803_1005810392	3300000955	Soil	VKLRLKRLESSADHHHEVIAPTDALTALKILAETH
JGI12635J15846_108143512	3300001593	Forest Soil	VIETNPKLLRQKIASAQQAAILRLKQLENSADHHHEVIALTDALTALKILAETTWAV*
Ga0066676_100401436	3300005186	Soil	AAILRLKQLQNSADHHHELIALTDALTALKILAETTWAE*
Ga0066676_102969391	3300005186	Soil	ETNPKLFKQKIAGAQQAALLRLKTIENTTEHYAELRALTDALTALKILRETIWAE*
Ga0070709_108306353	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AVIEANPKLLKLKIASAEQAALLRFKELQNSSDHHEELIALTDALTALKILGESDWAE*
Ga0070705_1019275771	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	NPKLLKHKIAGAEQAAMLRLKQLQNSADHHHELIALTDALTALKILAETTWAD*
Ga0070706_1012779322	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AVIETNPKLLKHKIAAAEQAATLRFKELENSADHHEERIALTNALTALKILGESNWAE*
Ga0070707_1003555886	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	QAAILRLKQLEHSADHHHELTALTDALTALKILGETIWAE*
Ga0070699_1021729592	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	AVIETNPKLLKQKISSAQQAAILRLKQLEHSADHHHELTALTDALTALKILGETIWAE*
Ga0066692_105886972	3300005555	Soil	GAEQAAILRFKELENSSDHHEELIALTDTLTALKILGESEWAG*
Ga0066707_109482791	3300005556	Soil	ETNPKLLKLKIAGAEQAAISRLKELEDSSDHHEERVGLTDALTALKILGESIWAE*
Ga0066704_108037052	3300005557	Soil	ILRLKQLENSADHHHEVIALTDALTALKILGETTWGAE*
Ga0066704_108133781	3300005557	Soil	QAAILRLKQLEHSADHHHELTALTDALTALKILGETLG*
Ga0066698_105019882	3300005558	Soil	RLKQLQNSADHHHELIALTDALTALKILAETTWAE*
Ga0070712_1014339513	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AGAEQAVILRFKQLENNADHHRELTALTDALSALKILGETIWAE*
Ga0066653_107673731	3300006791	Soil	TNPKLFKQKIAGAQQAAILRLKQLEHSADHHHELTALTDALTALKILRETIWAE*
Ga0066665_106031851	3300006796	Soil	KIAGAQQAAILRLKQLEHSADHHHELTALTDALTALKILGETLG*
Ga0066659_101625074	3300006797	Soil	IAGAEQAAILRLKQLENSADNHGEVIALTDALTALRILGETIWG*
Ga0099795_103883811	3300007788	Vadose Zone Soil	KLLKHKISSAEQAAMLRLKQLENSADHHHELIALTDALTALKILGETIWAE*
Ga0099795_104501681	3300007788	Vadose Zone Soil	SAQQAAILRLKQLENGADHHHELMALTDALTALKILGETIWAE*
Ga0099829_100800635	3300009038	Vadose Zone Soil	ILRLKQLENSPDHHHELIALTDALTALKILGETIWAE*
Ga0099830_112332831	3300009088	Vadose Zone Soil	KLLKQKIASAQQAAILRLKQIDKQTDHHHELMALTDALTALKLLAETSWG*
Ga0066709_1018496971	3300009137	Grasslands Soil	NQRIAGAQQAAILRLKQLENSTDHHHELIALTDALTALKILGETIWVD*
Ga0066709_1028299642	3300009137	Grasslands Soil	VIETNPKLLKQKIAGAEQAAILRLKQLQNSADHHHELIALTDALTALKILGETNWAE*
Ga0099796_100812741	3300010159	Vadose Zone Soil	QAAKLRLQQLENSADHHHELIALTDALTALQILGETIWAE*
Ga0137391_102893731	3300011270	Vadose Zone Soil	PLKLKIAAAEQAAKLRLKQLETSTDHHHELIALTDALTALKILGETNWAE*
Ga0137391_111390111	3300011270	Vadose Zone Soil	LKIAAAEQAAKLRLKQLETSTDHHHELIALTDALTALKILGETIWAE*
Ga0137391_112399052	3300011270	Vadose Zone Soil	MLKHKISSAQQAAILRLKQLENNADHHHELIALTDALTALKILGETIWAE*
Ga0137391_112592061	3300011270	Vadose Zone Soil	KLLKLKIAGAEQAAILRLKPLEHSADHHHEVMALTDALTALKILAETLG*
Ga0137393_100283571	3300011271	Vadose Zone Soil	NRQESAILRLKQLEDSADHHHELTALTDALTASIILGEINWAE*
Ga0137393_112017321	3300011271	Vadose Zone Soil	AAVTETNPKLVKHKISSAEQAAILRLKQLENSADHHHELTALTDALTALKILGETIWAD*
Ga0137388_109070642	3300012189	Vadose Zone Soil	ETNPKLLKQKIAGAQQAAILRFKQLENSADHHHEVIALTDALTALKILAETNWAE*
Ga0137388_117615231	3300012189	Vadose Zone Soil	QKIAAAERAAKLRFKELESGVDHHEEVRALTDALTALTILGETNWAE*
Ga0137365_104009861	3300012201	Vadose Zone Soil	RAAVIETNPKLLKLKIAGAEQAAILRLKQLQNSADHHHELIALTDALTALKILAETTWAE
Ga0137363_112368331	3300012202	Vadose Zone Soil	LKQKIAGAQQAAILRLKQLEHSADHHHELTALTDALTALKILGETIWG*
Ga0137362_110455304	3300012205	Vadose Zone Soil	STAQQAAMLRLKQLENSADHHHELIALTDALTALKILGETIWAE*
Ga0137380_102643831	3300012206	Vadose Zone Soil	KLRFKELENSADHHEERIALTDALTALKILGETNWTE*
Ga0137380_107816221	3300012206	Vadose Zone Soil	AAILRFKELESSSDHLAELRALTDALTALKILAETTWAE*
Ga0137376_101575605	3300012208	Vadose Zone Soil	AGVQQAAILRLKQLENSTDHHHEVIALTDALTALKILGETIWG*
Ga0137376_101694491	3300012208	Vadose Zone Soil	GAQQAAILRFKELENSSEHHAELRALTDALTALKILAETNWAE*
Ga0137378_103649522	3300012210	Vadose Zone Soil	VAVTETNPKLLKHKISSAQQTAILRLRQLENSADHHHELIALTDALTALKILGETIWAE*
Ga0137372_107450221	3300012350	Vadose Zone Soil	AGAEQAAILRLKELQNSADHHHELIALTDALTALKILAETTWAE*
Ga0137372_111259262	3300012350	Vadose Zone Soil	AILRFKELENSSDHHEERVALTDALTALKILGESNWAE*
Ga0137386_106203572	3300012351	Vadose Zone Soil	AVIETNPKLLKLKIAGVQQAAILRLKQLENSADHHHERIALTDALTALKILAETT*
Ga0137386_108455921	3300012351	Vadose Zone Soil	EHAAILRLKQLENSTDHHAELRALIDALTALKMLAETTWAE*
Ga0137386_110199791	3300012351	Vadose Zone Soil	NPKLLKLKIAGAQQAAILRLKQLENSADHHHEVIALTDALTALKILGETTWAE*
Ga0137360_100565231	3300012361	Vadose Zone Soil	LKQLENNADHHHELTALTDALSALKILAETTWAE*
Ga0137361_108236381	3300012362	Vadose Zone Soil	KQKIAGAQQAAILRLKQLENSPDHHHELIALTDALTALKILGETIWAE*
Ga0137361_109693571	3300012362	Vadose Zone Soil	LFKQKIAGAEQVVILRLKQLEDSADRHHELTALTDALTALKILGETNWAE*
Ga0137390_102566521	3300012363	Vadose Zone Soil	KISTAQQAAILRLKQLENSPDHHHELIALTDALTALKILGETIWAE*
Ga0137390_104634471	3300012363	Vadose Zone Soil	QQAAMLRLKQLENSADHHHELIALTDALTALKILAETNWAE*
Ga0137358_105312321	3300012582	Vadose Zone Soil	IAGAEHAVILRLKQLENNADHHHELIALTDALSALKILAETTWAE*
Ga0137395_104381661	3300012917	Vadose Zone Soil	KQKIAGAEQAVILRFKQLENSADHHHELIALTDALTALKILGETNWAE*
Ga0137394_105147244	3300012922	Vadose Zone Soil	QAAILRLKQLQNSADNHHELIALTDALTALKILAETTWAE*
Ga0137359_102337822	3300012923	Vadose Zone Soil	MKLQPRSQAAKLQLKQLEASTDHHHEVILLTDALTALKILAETNWAE*
Ga0137413_113898042	3300012924	Vadose Zone Soil	GAEQAAILRFKELENSPDHHEERVALTDALTALKILGESDWAG*
Ga0137419_106267093	3300012925	Vadose Zone Soil	AAVIETNPKLLKQKIASAQQAAMLRLRQIDKQTDHHHELTALTDALTALKLLAETSWG*
Ga0137404_104096061	3300012929	Vadose Zone Soil	AGAQQAAILRLKQLEHSADHHHELTALTDALTALKILGETIWG*
Ga0137404_109713661	3300012929	Vadose Zone Soil	AAILRFKELENSSDHHAELRALTDALTALKMLAETTWAE*
Ga0137404_111188931	3300012929	Vadose Zone Soil	TLLRQKIADAEGAAMLRLMQLENSVDSHPEVIALTDALTALKILEETIWAE*
Ga0137404_112530711	3300012929	Vadose Zone Soil	ILRFKELENSSDHHAELRALTDALTALKILAETT*
Ga0137404_113837362	3300012929	Vadose Zone Soil	METNPKLLKLKIVGAEQAAISRLKELENSSDHHEERVALTDALTALKILGES
Ga0137404_120839882	3300012929	Vadose Zone Soil	AAVIEANPKLLKQKIAGAQQAAILRLKQLENSADHHHELIALTDALTALKILGETSWAE*
Ga0137407_100387177	3300012930	Vadose Zone Soil	ADAEGAAMLRLMQLENSADSHPEVIALTDALTALKILEETTWAE*
Ga0137407_102112571	3300012930	Vadose Zone Soil	EGAAMLRLMQLENSADSHPEVIALTDALTALKILEETIWAE*
Ga0137407_110611431	3300012930	Vadose Zone Soil	RLKQLEHSADHHHELTALTDALTALKILGETIWAE*
Ga0164308_110337632	3300012985	Soil	AERAAILRLKQLENHHHELTALTDTLTALKILRQTTWAG*
Ga0137414_11855772	3300015051	Vadose Zone Soil	GAQQAAMLRLKQLEDGADHHHELTALTDTLTALKILAETNWAE*
Ga0137405_10505881	3300015053	Vadose Zone Soil	GAEQAVILRLKQLENSADHHHELTALTDALSALKILGETICPE*
Ga0137403_100773536	3300015264	Vadose Zone Soil	QAAILRLKQLEHSADHHHELTALTDALTALKILGETIWG*
Ga0066662_128227071	3300018468	Grasslands Soil	AILRLKQLQNSADHHHELIALTDALTALKILAETTWAE
Ga0137408_12562592	3300019789	Vadose Zone Soil	VIETNPKLLKLKIAGAQQAAILRLKQLENSADHHHEVIALTDALTALKILGETTWGAE
Ga0193729_12062751	3300019887	Soil	RLKQLETSTDHHHELIALTDALTALKILGETNWAE
Ga0210393_101523861	3300021401	Soil	RPPRKLRKHKIADAQRAAILRLQQLENSADHHHELIALTDTLAALKILAEANWAG
Ga0207699_106696621	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AVIEANPKLLKLKIASAEQAALLRFKELQNSSDHHEELIALTDALTALKILGESDWAE
Ga0207684_102504105	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	YRAAVIETNPKLLKQKISSAQQAAVLRLKQLEHSADHHHELTALTDALTALKILGETIWA
Ga0207684_102746871	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	KLKIADAEQAAILRLKQLQNSADHHHELIALTDALTALKILAETTWAE
Ga0207684_110769082	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AVIETNPKLLKHKIAAAEQAATLRFKELENSADHHEERIALTNALTALKILGESNWAE
Ga0207663_111085823	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	QAAILRLKQLEHSADHHHELTALTDALTALKILGETIWAE
Ga0207665_104729561	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PKLLKQKISTAQQAAMSSLKQLEHSADHHHELTALTDALTALKILRETIWAE
Ga0207665_110380711	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	QQAAILRLKQLEDSADHHHELTALTDTLTALKILGETNWAE
Ga0209131_13095831	3300026320	Grasslands Soil	AVIETNPKLLKQKIASAQQAAILRFKQLENCADHHHELTALTDALTALNILAETTWG
Ga0257166_10378341	3300026358	Soil	KHKISNARQAAILRFKQLENSADHHHELIALTDALTALKILAETTWAE
Ga0257160_10254311	3300026489	Soil	YRAAVIEANPKLLKQKIAGAQQAVILRLKQLENSADHHHELTALTDALSALKILGETIWA
Ga0257160_10474911	3300026489	Soil	QAAILRLKQLENGADHHHELIALTDALTALKILGETIWAE
Ga0257153_10599213	3300026490	Soil	KISNARQAAILRFKQLENSADHHHELIALTDALTALKILGETIWAE
Ga0209690_12706512	3300026524	Soil	IETNPKLFKQKIAGAQQAAILRLKQLEHSADHHHELTALTDALTALKILGETIWG
Ga0209160_10731463	3300026532	Soil	LLKQKIAGAEQAAILRLKQLEHSADHHHELTALTDALTALKILGETIWAE
Ga0179587_103006631	3300026557	Vadose Zone Soil	MLRLKQLENSADHHHELIALTDALTALKILGETIWAE
Ga0137415_102308431	3300028536	Vadose Zone Soil	KHKIAGAQQAAILRLKQLEDRADHHHELTALTDTLTALKILGETNWAE
Ga0137415_110580011	3300028536	Vadose Zone Soil	KIAGAQQAAILRLKQLEDSADHHHELTALTDTLTALKILAETNWAE
Ga0137415_110843752	3300028536	Vadose Zone Soil	PKLLRLKIAGAEQAAILRFKELENSPDHHEERVALTDALTALKILGESDWAG
Ga0137415_113166431	3300028536	Vadose Zone Soil	NPKLFKQKISAAQQAAMLRLKQLENSADHHHELIALTDALTALKILAETT
Ga0257175_11165602	3300028673	Soil	IEINPTLLKLKIAAAEQAAKLRLKQLETSTDHHHELIALTDALTAMKILGETIWAE
Ga0170834_1050972821	3300031057	Forest Soil	TETNPKLLKHKISSAEQAAMLRLKQLANSADHHHELIALTDALTALKILGETIWAE
Ga0170834_1089575541	3300031057	Forest Soil	QQAAISRLKQLENGADHHHELIALTDALTALKILGETIWAE
Ga0170822_170198321	3300031122	Forest Soil	AQQAAILRLKQLENGADHHHELIALTDALTALKILGETIWAE
Ga0307478_114143221	3300031823	Hardwood Forest Soil	PKLLKQKIAGAAQAVILRLKQLENRADHHHERIALTDALSALRILRETIWAE
Ga0307471_1031143013	3300032180	Hardwood Forest Soil	AVAEQAVILRLKQLENSADHHHELIALTDALAALKILAETTWAE
Ga0307472_1019236651	3300032205	Hardwood Forest Soil	AVIETNPKLRKHKIAGAQQAAILRLKQLESTADHHHELIALTDALAALKILAETTWAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103639

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences