Metagenome Family F103621

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103621
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	102 residues
Representative Sequence	MSLHIGQQVVCINDVFSSCPYWRAAVSAFPKLHMIYTIRHMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIAVFEKLLAPAPAEPLDVT
Number of Associated Samples	82
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.00 %
% of genes near scaffold ends (potentially truncated)	26.73 %
% of genes from short scaffolds (< 2000 bps)	69.31 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (60.396 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (21.782 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.416 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.77% β-sheet: 10.77% Coil/Unstructured: 68.46%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00300	His_Phos_1	9.90
PF13561	adh_short_C2	8.91
PF01264	Chorismate_synt	7.92
PF03401	TctC	5.94
PF00497	SBP_bac_3	3.96
PF00528	BPD_transp_1	3.96
PF13410	GST_C_2	2.97
PF01810	LysE	2.97
PF13602	ADH_zinc_N_2	1.98
PF00459	Inositol_P	0.99
PF02653	BPD_transp_2	0.99
PF09360	zf-CDGSH	0.99
PF04909	Amidohydro_2	0.99
PF00890	FAD_binding_2	0.99
PF02556	SecB	0.99
PF05015	HigB-like_toxin	0.99
PF04542	Sigma70_r2	0.99
PF04055	Radical_SAM	0.99
PF08281	Sigma70_r4_2	0.99
PF05222	AlaDh_PNT_N	0.99
PF01168	Ala_racemase_N	0.99
PF00873	ACR_tran	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	7.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.94
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.99
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.99
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.99
COG1952	Preprotein translocase subunit SecB	Intracellular trafficking, secretion, and vesicular transport [U]	0.99
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.99
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.40 %
Unclassified	root	N/A	39.60 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.50 %
Unclassified	root	N/A	39.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.56 %
Unclassified	root	N/A	39.60 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.99 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.99 %
unclassified Rhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae	0.99 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.99 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.99 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.99 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.99 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
Rhizobium sp. ARZ01	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. ARZ01	0.99 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.99 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10045607	Not Available	2456	Open in IMG/M
3300004082\|Ga0062384_101044786	Not Available	586	Open in IMG/M
3300004092\|Ga0062389_100916738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. ARZ01	1059	Open in IMG/M
3300004092\|Ga0062389_102404012	Not Available	697	Open in IMG/M
3300005332\|Ga0066388_102952647	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300005435\|Ga0070714_100135788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2202	Open in IMG/M
3300005435\|Ga0070714_101207988	Not Available	738	Open in IMG/M
3300005436\|Ga0070713_100201965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1796	Open in IMG/M
3300005436\|Ga0070713_102448092	Not Available	505	Open in IMG/M
3300005529\|Ga0070741_10000871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	100479	Open in IMG/M
3300005533\|Ga0070734_10000274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	128268	Open in IMG/M
3300005534\|Ga0070735_10595219	Not Available	656	Open in IMG/M
3300005537\|Ga0070730_10007293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9360	Open in IMG/M
3300005538\|Ga0070731_10087317	Not Available	2067	Open in IMG/M
3300005610\|Ga0070763_10129798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1299	Open in IMG/M
3300005764\|Ga0066903_101191343	All Organisms → cellular organisms → Bacteria → Proteobacteria	1413	Open in IMG/M
3300005764\|Ga0066903_105981103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	638	Open in IMG/M
3300006050\|Ga0075028_100081566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1618	Open in IMG/M
3300006176\|Ga0070765_100067418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2989	Open in IMG/M
3300006354\|Ga0075021_10345423	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300006903\|Ga0075426_10381279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1039	Open in IMG/M
3300006903\|Ga0075426_10990355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300007788\|Ga0099795_10002600	All Organisms → cellular organisms → Bacteria	4287	Open in IMG/M
3300009792\|Ga0126374_10974232	Not Available	663	Open in IMG/M
3300010048\|Ga0126373_11159582	Not Available	839	Open in IMG/M
3300010159\|Ga0099796_10043992	All Organisms → cellular organisms → Bacteria → Proteobacteria	1524	Open in IMG/M
3300010359\|Ga0126376_11021116	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300010361\|Ga0126378_10049677	Not Available	3901	Open in IMG/M
3300010366\|Ga0126379_10631714	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300010366\|Ga0126379_12716973	Not Available	592	Open in IMG/M
3300010376\|Ga0126381_104046647	Not Available	570	Open in IMG/M
3300010376\|Ga0126381_104601588	Not Available	532	Open in IMG/M
3300010398\|Ga0126383_13224110	Not Available	533	Open in IMG/M
3300010937\|Ga0137776_1646890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3189	Open in IMG/M
3300012210\|Ga0137378_11609933	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300012361\|Ga0137360_10299840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1334	Open in IMG/M
3300012362\|Ga0137361_11631540	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300012924\|Ga0137413_10002956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7270	Open in IMG/M
3300012925\|Ga0137419_11306294	Not Available	610	Open in IMG/M
3300012971\|Ga0126369_11246056	All Organisms → cellular organisms → Bacteria → Proteobacteria	834	Open in IMG/M
3300012986\|Ga0164304_10470215	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300014167\|Ga0181528_10701158	Not Available	565	Open in IMG/M
3300014199\|Ga0181535_10277093	Not Available	1006	Open in IMG/M
3300014200\|Ga0181526_11065418	Not Available	508	Open in IMG/M
3300014501\|Ga0182024_10111849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3935	Open in IMG/M
3300014501\|Ga0182024_10168356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3047	Open in IMG/M
3300014657\|Ga0181522_10058247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2184	Open in IMG/M
3300014657\|Ga0181522_10062425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2112	Open in IMG/M
3300015242\|Ga0137412_10007343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8843	Open in IMG/M
3300015245\|Ga0137409_10481754	Not Available	1063	Open in IMG/M
3300016319\|Ga0182033_12081069	Not Available	518	Open in IMG/M
3300016341\|Ga0182035_12018339	Not Available	524	Open in IMG/M
3300017970\|Ga0187783_10894640	Not Available	640	Open in IMG/M
3300017970\|Ga0187783_11104719	Not Available	571	Open in IMG/M
3300017970\|Ga0187783_11153141	Not Available	558	Open in IMG/M
3300017970\|Ga0187783_11342699	Not Available	515	Open in IMG/M
3300017972\|Ga0187781_10096120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2054	Open in IMG/M
3300017972\|Ga0187781_10229771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1311	Open in IMG/M
3300017974\|Ga0187777_10412884	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300017975\|Ga0187782_10278928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1259	Open in IMG/M
3300017994\|Ga0187822_10131074	Not Available	791	Open in IMG/M
3300018007\|Ga0187805_10388075	Not Available	647	Open in IMG/M
3300018062\|Ga0187784_10226364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1524	Open in IMG/M
3300018062\|Ga0187784_10666752	Not Available	833	Open in IMG/M
3300018062\|Ga0187784_10933194	Not Available	690	Open in IMG/M
3300018062\|Ga0187784_11238379	Not Available	592	Open in IMG/M
3300018085\|Ga0187772_10065770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2266	Open in IMG/M
3300018085\|Ga0187772_10066615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2253	Open in IMG/M
3300018088\|Ga0187771_10063043	All Organisms → cellular organisms → Bacteria	2914	Open in IMG/M
3300018088\|Ga0187771_10533734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	994	Open in IMG/M
3300018090\|Ga0187770_10627336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	855	Open in IMG/M
3300020581\|Ga0210399_10285238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1378	Open in IMG/M
3300021086\|Ga0179596_10163030	Not Available	1068	Open in IMG/M
3300021170\|Ga0210400_10861759	Not Available	741	Open in IMG/M
3300021171\|Ga0210405_10157952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1796	Open in IMG/M
3300021477\|Ga0210398_11378577	Not Available	552	Open in IMG/M
3300021479\|Ga0210410_10793254	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300021560\|Ga0126371_10008949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9015	Open in IMG/M
3300025915\|Ga0207693_10096537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2317	Open in IMG/M
3300025928\|Ga0207700_10060024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2879	Open in IMG/M
3300025929\|Ga0207664_10302613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1407	Open in IMG/M
3300026557\|Ga0179587_10831722	Not Available	609	Open in IMG/M
3300027512\|Ga0209179_1003075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	2355	Open in IMG/M
3300027648\|Ga0209420_1008478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3833	Open in IMG/M
3300027826\|Ga0209060_10000230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	128286	Open in IMG/M
3300027855\|Ga0209693_10188542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1016	Open in IMG/M
3300027857\|Ga0209166_10003407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11497	Open in IMG/M
3300027894\|Ga0209068_10476912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300027903\|Ga0209488_10001705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18644	Open in IMG/M
3300027908\|Ga0209006_10862953	Not Available	729	Open in IMG/M
3300031573\|Ga0310915_10920492	Not Available	612	Open in IMG/M
3300031708\|Ga0310686_119793884	Not Available	759	Open in IMG/M
3300031912\|Ga0306921_11022880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	931	Open in IMG/M
3300032770\|Ga0335085_12347336	Not Available	533	Open in IMG/M
3300032783\|Ga0335079_10265260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1884	Open in IMG/M
3300032805\|Ga0335078_10199289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2781	Open in IMG/M
3300032892\|Ga0335081_10000019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	301523	Open in IMG/M
3300032895\|Ga0335074_10569052	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300032898\|Ga0335072_10316017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1737	Open in IMG/M
3300033289\|Ga0310914_11528105	Not Available	571	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.02%
Host-Associated	Host-Associated	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.16%
Aquatic	Environmental → Aquatic	13.86%
Plants	Host-Associated → Plants	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.16%
Freshwater	Environmental → Aquatic → Freshwater	9.90%
Sediment	Environmental → Aquatic → Sediment	2.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.74%
Loam	Environmental → Terrestrial → Soil → Loam	15.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	23.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.99%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	16.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.98%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100456072	3300001661	Forest Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGVYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVV*
Ga0062384_1010447862	3300004082	Bog Forest Soil	RRRERWIIVPGALTGPPLAANGVTAMSFHIGQQVVCINDVFSSCPYWRRALSALPKLHMVYTIRSMREAHGLLGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIAVFEKLLVPSPAPPLDVG*
Ga0062389_1009167383	3300004092	Bog Forest Soil	PRIIAKNSSWRKRPVRTGGVLYLLRAPVCLFAATGVTAMSFHVGQQVVCINDVFSSCPYWRGAVSALPKVHMIYTIRHMREAHGLLGLCFFEIMSPRAQFAEGYVEPAFNSKNFRPVKRTSIGVFEKLLAPAPASLDVA*
Ga0062389_1024040122	3300004092	Bog Forest Soil	AIIAHAIIEDTAMGLHVGLQVVCISDVFSPCQYWRRAVRTWPKLHMIYTIRDMREVKGLVGLCFFEIVNPREHSFEGYAEPAFKSQNFRPVRRTSIEIFKRLLTPAPADLLETV*
Ga0066388_1029526472	3300005332	Tropical Forest Soil	MDLHAGQQVVCINNIFSPCEYWRQRVSAFPMLHGIYTIRSMREVHGLIGLCFHEIRSPPAHFAEGYVEPAFNSRNFRPVRHTSIEAFERLLLPAELVGA*
Ga0070714_1001357883	3300005435	Agricultural Soil	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTVRHIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEEILQDAPAPADTPELV*
Ga0070714_1012079881	3300005435	Agricultural Soil	AFSPCPYWRRAVSALPRLGMVYTIRSIREAHGLIGLCFFEIVSPHAHFSEGYVEPAFNSQNFRPVRRTSIAVFEGILQDTPAPAPADATELV*
Ga0070713_1002019652	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTIRHIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEEMLQDTPTPADTPELV*
Ga0070713_1024480921	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTVRYIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEEILQDAPAPADTPALV*
Ga0070741_1000087173	3300005529	Surface Soil	MSFGVGLQVVCVSEAFSPCPYWRRAVSALPRLGMVYTIRSIREAHGLIGLCFFEIVSPHAHFSEGYVEPAFNSQNFRPVRRTSIAVFEGILQDTPAPAPADATELV*
Ga0070734_1000027494	3300005533	Surface Soil	MNLHVGQQVVCVNDAFSQCPYWRRAVATLPKLGMIYTIRHIREAHGLIGLTFFEIVSPQAHFSEGYVEPAFNSKNFRPVRRTDIAAFEQILQDTPAPADTPELV*
Ga0070735_105952192	3300005534	Surface Soil	MSFDVGLQVVCVSEAFSPCPYWRRAVSALPRLGMVYTIRSIREAHGLIGLCFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEGILQDTPAPAPA
Ga0070730_100072932	3300005537	Surface Soil	MNLHVGQQVVCVNDAFSQCPYWRRAVATLPKLGMIYTIRHIREAHGLIGLTFFEILSPQAHFSEGYVEPAFNSKNFRPVRRTDIAAFEQILQDTPAPADTPELV*
Ga0070731_100873172	3300005538	Surface Soil	MSFHVGQQVVCISDVFSTCPYWRRAVGALPKLHMIYTIRHMREAHGLIGLCFYEIVSPRAQFAEGYVEPAFKSKNFRPAKPTSIEIFKKLLAPAPAELLDNHGVSAKGRTSGIIGSAPQPF*
Ga0070763_101297982	3300005610	Soil	MTFHIGQQVVCVNDVFSSCPYWRSAISAFPKLHMIYTIRHMREAHGLLGLCFCEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFEKLLAPAPTAPLDVT*
Ga0066903_1011913432	3300005764	Tropical Forest Soil	MGFAVGQQVVCVSDVFSPCEYWRERVRAFPCLHGVYTIREMREVGDLTGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKRTSIEVFTRLLAPADPVGAV*
Ga0066903_1059811032	3300005764	Tropical Forest Soil	MSLAVGQQVVCISDVFSPCEYWRRAVREWPRRNGIYTIRAMREVGDLVGLMFYELKSPCAEFAEGFVEPAFNSKNFR
Ga0075028_1000815662	3300006050	Watersheds	MSFQVGQQVVCINDVFSPCRYWRAALSAFPRLHGIYTIRRMREAHGLLGLCFHEIVSPPADFSEGFVEPAFNSKNFRPVKPTSIAVFAQLLAPADLVEA*
Ga0070765_1000674183	3300006176	Soil	MSFHIGQQVVCINDVFSSCPYWRRALSALPKLHMIYTIRNMREAHGLLGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKPTSIAVFEKLLVPAPAPPLDVG*
Ga0075021_103454231	3300006354	Watersheds	MSFQVGQQVVCINDVFSPCRYWRAALSAFPRLHGVYTIRHMREAHGLLGLCFHEIVSPPADFSEGFVEPAFNSKNFRPVKPTSIAVFAQLLAPADLVEA*
Ga0075426_103812791	3300006903	Populus Rhizosphere	MSLDVGQQVVCVNDVFSACPYWRAAVTAFPVLHGIYTIRHIREAHGLIGLCFHEIVSPHRDFAEGYVEPAFNSRNFRPVKRT
Ga0075426_109903551	3300006903	Populus Rhizosphere	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTIRHIREAHGLIGLCFFEIVSPQAHFSEGYVEPAFNSKNFRPVRRTSI
Ga0099795_100026003	3300007788	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVV*
Ga0126374_109742321	3300009792	Tropical Forest Soil	MSFAVGQQVVCVSDVFSPCEYWRERVRAFPRLHGVYTIRSMREVGDLIGLMFYEMRSPRAQFAEGFVEPAFNSR
Ga0126373_111595822	3300010048	Tropical Forest Soil	MGFAVGQQVVCVSDVFSPCEYWRERVRAFPCLHGVYTIREMREVGDLIGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKRTSIEVFTRLLAPADPVGAV*
Ga0099796_100439922	3300010159	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVA*
Ga0126376_110211161	3300010359	Tropical Forest Soil	MSFAVGQQVVCVSDVFSPCEYWRERVRAFPCLHGVYTIREMREVGDLTGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKRTSIEV
Ga0126378_100496772	3300010361	Tropical Forest Soil	MSLHVGQQVVCVNDAFSPCPYWRRAVSTLPKLGMVYTIRHIREAHGLIGLCFFEIVSTHAHFSEGYVEPAFNSKNFRPVRRTSIALFEEILQGTPAPADAPALV*
Ga0126379_106317142	3300010366	Tropical Forest Soil	MSFHVGQQVVCINDVFSPCPYWRAAVSAFPRLHGVYTIRHMREAHGLLGLCFHEIASPPREFAEGFVEPAFNSRNFRPVKPTSIAIFERLLAGADLVEAT*
Ga0126379_127169732	3300010366	Tropical Forest Soil	MSFAVGQQVVCVSDVFSPCEYWRERVRAFPRLHGVYTIREMREVGDLLGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKRTSIEVFTRLLAPADPVGAV*
Ga0126381_1040466471	3300010376	Tropical Forest Soil	MSLHVGQQVICINDVFAPCPYWRAAVSAFPKLNGIYTIRHMREAHGLIGLCFYEIVSPPAEFSEGLVEPAFNSKNFRPVRPTSIAVFKKLLTPTDLVEAA*
Ga0126381_1046015881	3300010376	Tropical Forest Soil	MSFAVGQQVVCVSDVFSLCEYWRERVRAFPRLHGVYTIREMREVGDLTGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKRTSIEVFTRLLAPADPVGAV*
Ga0126383_132241101	3300010398	Tropical Forest Soil	MSFAVGQQVVCVSDVFSACEYWRERVRAFPRLHGVYTIREMREVGDLLGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKPTSIEVFTRLLAPADPVGAV*
Ga0137776_16468903	3300010937	Sediment	MSFDVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTIRSIREAHSLIGLCFFEIVSPHAHFSEGYVEPAFNSENFRPVRRTSIAIFEEILQDTPALTDATELV*
Ga0137378_116099331	3300012210	Vadose Zone Soil	HVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHMREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDLLEVV*
Ga0137360_102998402	3300012361	Vadose Zone Soil	MSFHAGQLVVCVSDAFSLCEYWRQAVKSLPKLHGIYTIRHMREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDLLEVV*
Ga0137361_116315402	3300012362	Vadose Zone Soil	MSFHAGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHMREAHGLIGLCFYEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDLLEVV*
Ga0137413_100029565	3300012924	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHMREAHGLIGLCFYEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVA*
Ga0137419_113062941	3300012925	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGVYTIRHTREAHGLIGLCFYEIRSPHADFSEGYVEPAFNSKNFRPVKWTSIEIFEKLLAP
Ga0126369_112460562	3300012971	Tropical Forest Soil	MSFAVGQQVVCVSDVFSPCEYWRERVRAFPRLHGVYTIREMREVGDLLGLMFYEMRSPRAQFAEGFVEPAFNSRNFRPVKRTSIEVFTKLLVPEPVGA
Ga0164304_104702152	3300012986	Soil	MSLDVGQQVVCVNDVFSACPYWRAAVTAFPVLHGIYTIRHIREAHGLIGLCFHEIVSPHRDFAEGYVEPAFNSRNFRPVKRTDIEIFKKLLVPADLLEVA*
Ga0181528_107011581	3300014167	Bog	ALPFAMSLHVEQQVVCVNDVFSSCPIWRAAVTSFPVLGGIYTIRDMREARGLIGLCFHEIVSPHRHFAEGYVEPAFNSENFRPVRRTSIEIFKRLLVPAGLLEIA*
Ga0181535_102770932	3300014199	Bog	MSFHVGQQVVCVNDVFSSCPYWRRAVSTLPKLHMVYTIRHMREARGLLGLCFYEIVSPHAEFAEGYVEPAFNSKNFRPVKPTSIAIFEKLLLPAPTAPLEVG*
Ga0181526_110654181	3300014200	Bog	MSFHVGQQVVCVNDVFSSCPYWRRAVSTLPKLHMVYTIRHMREARGLLGLCFYEIVSPCAQFSEGYVEPAFNSKNFRPVKPTSIAIFEKLLLPAPTAPLEV
Ga0182024_101118494	3300014501	Permafrost	MSFHVGQQVVCINDVFSSCPYWRRALSALPKLHMIYTIRSMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKYTSIEVFEKLLAPAPTAPLDVG*
Ga0182024_101683564	3300014501	Permafrost	MSFHVGQQVVCISDVFSPCEYWRAAVSAFPKLHGIYTIRHMREAHGLLGLCFHEIVSAPTDFSEGFVEPAFNSKNFRPVKPTSIAVFEQLLAPVDLVEAI*
Ga0181522_100582473	3300014657	Bog	MSFHVGQQVVCINDVFSSCPYWRRALSALPKLHTIYTIRSMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKHTSIDVFEKLLAPAPAPPLEVG*
Ga0181522_100624253	3300014657	Bog	MSFHIGQQVVCINDVFSSCPYWRRALTALPKLHIVYTIRNMREAHGLIGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIAIFEKLLVPALAPPLDVG*
Ga0137412_100073437	3300015242	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGVYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVA*
Ga0137409_104817542	3300015245	Vadose Zone Soil	MSLHVGQLVVCVNDAFSQCEYWRQAVQSLPKLHGIYTIRHMREAHGLIGLCFYEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDLVEVV*
Ga0182033_120810691	3300016319	Soil	MSLHVGQQVVCINDVFAPCPHWRAALSAFPKLGGIYTIRHMREAHGLIGLCFYEIVSPLAEFSEGFVEPAFNSRNFRPVKPTSIAVFKKLLAPTDLVEAA
Ga0182035_120183391	3300016341	Soil	MSFAVGQQVVCVNDVFSPCEYWRERVRAFPRLHGIYTIREMREVGELLGLMFYEMQSPRAQFAEGFVEPAFNSRNFRPAKRTSIEAFTKLLVPEPVGAA
Ga0187783_108946401	3300017970	Tropical Peatland	MIRLRERARPFAATGVTAMSFHIGQQVVCINDVFSSCPYWRSAISAFPKLHMVYTIRNMREAHGLLGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIEVFEKLLVRQPAPLLDVG
Ga0187783_111047192	3300017970	Tropical Peatland	MTFHIGQQVVCINDVFSSCPYWRAAVSAFPKLRMIYTIRHMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRQVKRTSIEVFEKLLAPAPTVPADVT
Ga0187783_111531411	3300017970	Tropical Peatland	MSFHIGQQVVCVNDVFSSCPYWRAAVSAFPKLRMIYTIRHMREAHGLLGLCFYEIESPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFEKLLAPAPVVPVDVT
Ga0187783_113426991	3300017970	Tropical Peatland	MSFHAGQQVVCVNDVFSSCPYWRSAVSAFPKLHMIYTIRHMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFEKLLAPVPAASADVS
Ga0187781_100961203	3300017972	Tropical Peatland	MSFHVGQQVVCVNDVFSSCPYWRSAVSAFPKLRMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIEVFEKLAPVPTAPLDVA
Ga0187781_102297711	3300017972	Tropical Peatland	MIRRRERVCPFAATGVTAMSFHVGQQVVCVNDVFSSCPYWRSAISAFPKLHMIYTIRHMREAHGLIGLCFYEILSPRAQFSEGFVEPAFNSKNFRSVKRTSIEVFEKLLAPAPTAPVDVT
Ga0187777_104128842	3300017974	Tropical Peatland	MSFHAGQQVVCINDVFSSCPYWRSAVSAFPKLHMIYTIRHMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFEKLLAPSPAHAVKVT
Ga0187782_102789282	3300017975	Tropical Peatland	MSFHVGQQVVCINDVFSSCPYWRSAVSAFPKLRMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIEVFEKLLAPSPTAPLDVA
Ga0187822_101310741	3300017994	Freshwater Sediment	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPRLGMVYTIRSIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEGILQDTPAPAPADATELV
Ga0187805_103880752	3300018007	Freshwater Sediment	MSFGVGQQVVCVSDAFSPCPYWRRAVSALPKLGMVYTIRHIREAHGLIGLYFFEIVSPHARFSEGYVEPAFNSKNFRPVRRTSIAPFEQILRKAPAPSRSTELV
Ga0187784_102263641	3300018062	Tropical Peatland	MIRRRERVCPFAAAGVTAMSFHVGQQVVCINDVFSSCPYWRSAVSAFPKLHMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFEKLLAPAPTEPLDVI
Ga0187784_106667522	3300018062	Tropical Peatland	MSLHIGQQVVCINDVFSSCPYWRAAVSAFPKLHMIYTIRHMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIAVFEKLLAPAPAEPLDVT
Ga0187784_109331942	3300018062	Tropical Peatland	MSFHIGQQVVCINDVFSSCPYWRSAVSAFPKLHMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPLKRTSIEVFEKLLTPAPTEPVEVN
Ga0187784_112383792	3300018062	Tropical Peatland	FASTGVTAMSFHVGQQVVCINDVFSSCPYWRSAVSAFPKLRMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIEAFEKLLAPAPAAPLDVA
Ga0187772_100657702	3300018085	Tropical Peatland	MTFHIGQQVVCVNDVFSSCPYWRSAISAFPKLRMIYTIRHMREAHGLLGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFERLLTPVPTAPLDVT
Ga0187772_100666152	3300018085	Tropical Peatland	MSFHVGQQVVCINDVFSSCPYWRSAVSAFPKLRMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRTSIEVFEKLLAPVPTAPLDVA
Ga0187771_100630433	3300018088	Tropical Peatland	MSWHVGQQVVCVNDVFSPCAYWRRAVSAFPRLHAIYTIRHIREAHGLIGLCFYEIESPPAQFSEGFVEPAFNSKNFRPVRRTSIEVFTKMLAPTDLVEA
Ga0187771_105337343	3300018088	Tropical Peatland	MSWHVGQQVVCINDVFSPCAYWRRAVSAFPRLHGIYTIRHMREAHGLIGLCFYEIESPPAQFSEGFVEPAFNSKNFRPVRPTPIDVFLKMLAPTDLVD
Ga0187770_106273362	3300018090	Tropical Peatland	MSFHVGQQVVCINDVFSSCPYWRSAVSAFPKLHMIYTIRHMREAHGLIGLCFYEIVSPRAQFSEGYVEPAFNSKNFRPLKRTSIEVFEKLLTPASTEPLDVI
Ga0210399_102852382	3300020581	Soil	MSLHVGQQVVCINDAFSPCEYWRAALSAFPRLHGIYTIRHMREAHGLLGLCFHEIVSPPAEFSEGFVEPAFNSKNFRPVKPTRIEVFARLLAAADLVDA
Ga0179596_101630301	3300021086	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGVYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVA
Ga0210400_108617591	3300021170	Soil	MSFHVGQQVVCINDVFSPCEYWRAAVSAFPKLHGIYTIRHMREAHGLLGLCFYEIVSAPADFSEGFVEPAFNSKNFRPVKPTSITVFERLLAPVDLVEAL
Ga0210405_101579522	3300021171	Soil	MSYQVGQQVVCINDVFSPCKYWRAAVRAFPRLHGIYTIRHMREAHGLLGLCFYEIVSPPADFSEGFVEPAFNSKNFRPVKPTSIAVFEQLLVPADLVETA
Ga0210398_113785772	3300021477	Soil	MSLRVGQQVVCISEAFSPCPYWRRALTALPKLHMIYTIRDMRVAHGLLGLCFYEIVSPRAHFSEGYVEPAFNSKNFRPVKRTS
Ga0210410_107932541	3300021479	Soil	MSLHVGQQVVCINDAFSPCEYWRAALSAFPRLHGIYTIRHMREAHGLLGLCFHEIVSPPQEFSEGFVEPAFNSKNFRPVKPTRIEVFARLLAPADLVDA
Ga0126371_100089494	3300021560	Tropical Forest Soil	MSLHVGQQVVCVNDAFSPCPYWRRAVSTLPKLGMVYTIRHIREAHGLIGLCFFEIVSTHAHFSEGYVEPAFNSKNFRPVRRTSIALFEEILQGTPAPADAPALV
Ga0207693_100965373	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	HVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTVRYIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEEILQDAPAPADTPELV
Ga0207700_100600242	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTIRHIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEEMLQDTPTPADTPELV
Ga0207664_103026132	3300025929	Agricultural Soil	MSLHVGQQVVCVNDAFSPCPYWRRAVSALPKLGMVYTVRHIREAHGLIGLTFFEIVSPHAHFSEGYVEPAFNSKNFRPVRRTSIAVFEGILQDTPAPAPADATELV
Ga0179587_108317222	3300026557	Vadose Zone Soil	MSFHAGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHMREAHGLIGLCFYEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVV
Ga0209179_10030753	3300027512	Vadose Zone Soil	MSCNVGHLGVGLKGRAMSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVV
Ga0209420_10084785	3300027648	Forest Soil	MSYHIGQQVVCINDVFSSCPYWRRALSALPKLHMVYTIRNMREAHGLLGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKRACIAVFEKLLVPAPAPLLDVG
Ga0209060_1000023029	3300027826	Surface Soil	MNLHVGQQVVCVNDAFSQCPYWRRAVATLPKLGMIYTIRHIREAHGLIGLTFFEIVSPQAHFSEGYVEPAFNSKNFRPVRRTDIAAFEQILQDTPAPADTPELV
Ga0209693_101885421	3300027855	Soil	MTFHIGQQVVCVNDVFSSCPYWRSAISAFPKLHMIYTIRHMREAHGLLGLCFCEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEVFEKLLA
Ga0209166_100034072	3300027857	Surface Soil	MNLHVGQQVVCVNDAFSQCPYWRRAVATLPKLGMIYTIRHIREAHGLIGLTFFEILSPQAHFSEGYVEPAFNSKNFRPVRRTDIAAFEQILQDTPAPADTPELV
Ga0209068_104769121	3300027894	Watersheds	MSFQVGQQVVCINDVFSPCRYWRAALSAFPRLHGIYTIRRMREAHGLLGLCFHEIVSPPADFSEGFVEPAFNSKNFRPVKPTSIAVFAQLLAPADLVEA
Ga0209488_100017057	3300027903	Vadose Zone Soil	MSLHVGQLVVCVNDAFSPCEYWRQAVQSLPKLHGIYTIRHTREAHGLIGLCFHEIRSPHAHFSEGYVEPAFNSKNFRPVKQTSIEIFEKLLAPVDPVEVV
Ga0209006_108629531	3300027908	Forest Soil	MSFHIGQQVVCINDVFSSCPYWRRALSALPKLHMIYTIRNMREAHGLLGLCFYEIVSPRAQFSEGFVEPAFNSKNFRPVKPTSIAVFEKLRVPAPAPPLDVG
Ga0310915_109204921	3300031573	Soil	MSLHVGQQVVCINDVFAPCPYWRAAVSAFPKLGGIYTIRHMREAHGLIGLCFYEIVSPLAEFSEGFVEPAFNSRNFRPVKPTSIAVFKKLLAPTDLVEAA
Ga0310686_1197938842	3300031708	Soil	MSFHVGQQVVCINDVFSSCPYWRRVLTALPKLHMVYTIRHMREAHGLIGLCFYEIVSPHAQFSEGFVEPAFNSKNFRPVKRTSVAIFEKLLVPALAPPLDVG
Ga0306921_110228801	3300031912	Soil	MSFAVGQQVVCVNDVFSPCEYWRERVRAFPRLHGIYTIREMREVGELLGLMFYEMQSPRAQFAEGFVEPAFNSRNFRPVKRTSIEVFTKLLAPEPVGAV
Ga0335085_123473361	3300032770	Soil	MSFHVGQQVVCISGVFSPCPYWRKALTALPKLHMIYTIRHMREAHGLLGLCFYEIVSPPAHFSEGFVEPAFNSKNFRPVKPTSIDLFLKMPAPAKPLEVA
Ga0335079_102652602	3300032783	Soil	MGAESSFMMRSATEDTAMSFHIGQQVVCISDRFSAEPHWRRSVRAFPKLHMIYRIRDMREVQSLLGLCFFEFVNRHARFAEGYVEAAFNSKNFRPVKRTNIEVFEKLLAPVPNCPLELV
Ga0335078_101992892	3300032805	Soil	MMRSATEDTAMSFHIGQQVVCISDRFSAEPHWRRSVRAFPKLHMIYRIRDMREVQSLLGLCFFEFVNRHARFAEGYVEAAFNSKNFRPVKRTNIEVFEKLLAPVPNCPLELV
Ga0335078_114774331	3300032805	Soil	MLRLREWSHPFAAAGVTAMTFHIGQQVVCINDVFSSCPYWRSAVSTLPKLHMIYTIRHMREAHGLLGLCFYEIVSPRAQFAEGYVEPAFNSKN
Ga0335081_1000001943	3300032892	Soil	MSLHVGQQVVCVSDAFSPCPYWRRAVSALPKLSMVYTIRHIREAHGLIGLCFFEIVSPPARFSEGYVEPAFNSKNFRPVRRTSIAPFEQILRKTPAPGRSTELV
Ga0335074_105690521	3300032895	Soil	MSFNNGQQVVCVNDVFSSCPYWRSAISAFPKLRMIYTIRHMREAHGLLGLCFHEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIEAFEKLLAPTPTAPLDVT
Ga0335072_103160172	3300032898	Soil	MSFHNGQQVVCVNDVFSSCPYWRSAISAFPKLRMIYTIRHMREAHGLLGLCFHEIVSPRAQFSEGYVEPAFNSKNFRPVKRTSIQVFEKLLAPTPTAPLDVT
Ga0310914_115281051	3300033289	Soil	MSLHVGQQVVCINDVFAPCPYWRAAVSAFPKLGGIYTIRHMREAHGLIGLCFYEIVSPLAEFSEGFVEPAFNSRNFRPVKPTSIAVFKKLLAPT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103621

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences