Metagenome / Metatranscriptome Family F103593

Basic Information
Family ID	F103593
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	52 residues
Representative Sequence	LRLIWPWQDRNRRFSWLKASAFALVLLPGIRFAYQFGTGEYGTLPIALGGMT
Number of Associated Samples	88
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.802 % of family members)
Environment Ontology (ENVO)	Unclassified (32.673 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.455 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1JGI12053J15887_105519481 2JGI25615J43890_10552752 3Ga0062389_1039636971 4Ga0066690_103239701 5Ga0066388_1017776872 6Ga0066388_1033520232 7Ga0066388_1036994521 8Ga0066388_1084859842 9Ga0070734_103686011 10Ga0066699_112600101 11Ga0066694_104662532 12Ga0070763_103798921 13Ga0066905_1001221191 14Ga0066903_1056134512 15Ga0066903_1074078742 16Ga0080027_103135782 17Ga0075024_1001052751 18Ga0075026_1003387231 19Ga0070765_1013892731 20Ga0099793_102943803 21Ga0099795_100802911 22Ga0116222_13049792 23Ga0126374_116188441 24Ga0105059_10184251 25Ga0123355_107496872 26Ga0123355_108770001 27Ga0126384_115571961 28Ga0126382_105220331 29Ga0126382_124745622 30Ga0131853_107183861 31Ga0134071_107594251 32Ga0074046_108653701 33Ga0126376_114177272 34Ga0126377_131299912 35Ga0126379_123667241 36Ga0126379_131657052 37Ga0136449_1039022331 38Ga0126383_100666564 39Ga0137391_110752161 40Ga0137393_112515101 41Ga0137389_112690081 42Ga0137363_102436661 43Ga0137363_102795033 44Ga0137399_109184001 45Ga0137362_105867872 46Ga0137362_112836331 47Ga0137360_105512242 48Ga0137358_107568072 49Ga0137395_101315831 50Ga0137396_112421302 51Ga0137394_114536411 52Ga0137413_109579711 53Ga0137416_121934651 54Ga0137407_102999061 55Ga0164301_110903321 56Ga0126369_119935071 57Ga0126369_127919081 58Ga0163163_120407871 59Ga0134072_102876231 60Ga0182037_106065121 61Ga0187807_12278281 62Ga0187785_102199181 63Ga0187785_103577362 64Ga0187776_110235461 65Ga0187781_102111932 66Ga0184608_105071011 67Ga0184619_103966642 68Ga0184625_105158462 69Ga0187771_101932921 70Ga0066662_120307441 71Ga0210393_114833472 72Ga0210394_103800531 73Ga0210384_103737922 74Ga0210402_108383421 75Ga0210402_116110052 76Ga0247664_11219941 77Ga0209647_10958822 78Ga0257148_10219011 79Ga0209106_10702692 80Ga0209488_106997773 81Ga0207428_105475711 82Ga0209698_111500681 83Ga0209069_100333103 84Ga0137415_105252902 85Ga0307287_100307342 86Ga0310039_102804672 87Ga0308187_100445051 88Ga0307499_101148631 89Ga0307469_106766261 90Ga0318550_103145122 91Ga0318511_105622693 92Ga0306923_114978903 93Ga0310916_101896423 94Ga0318531_104928981 95Ga0306922_108539951 96Ga0318518_104367241 97Ga0307470_109021292 98Ga0307470_114559662 99Ga0307472_1018994411 100Ga0306920_1017498392 101Ga0372943_0690856_458_673
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1JGI12053J15887_105519481 2JGI25615J43890_10552752 3Ga0062389_1039636971 4Ga0066690_103239701 5Ga0066388_1017776872 6Ga0066388_1036994521 7Ga0066388_1084859842 8Ga0070734_103686011 9Ga0066699_112600101 10Ga0070763_103798921 11Ga0066905_1001221191 12Ga0066903_1056134512 13Ga0075026_1003387231 14Ga0099793_102943803 15Ga0116222_13049792 16Ga0126374_116188441 17Ga0105059_10184251 18Ga0123355_107496872 19Ga0123355_108770001 20Ga0126384_115571961 21Ga0126382_105220331 22Ga0126382_124745622 23Ga0126376_114177272 24Ga0126379_123667241 25Ga0126379_131657052 26Ga0126383_100666564 27Ga0137391_110752161 28Ga0137363_102436661 29Ga0137362_112836331 30Ga0137395_101315831 31Ga0137413_109579711 32Ga0137407_102999061 33Ga0164301_110903321 34Ga0126369_119935071 35Ga0182037_106065121 36Ga0187785_102199181 37Ga0187785_103577362 38Ga0187776_110235461 39Ga0187771_101932921 40Ga0210384_103737922 41Ga0210402_108383421 42Ga0210402_116110052 43Ga0247664_11219941 44Ga0209106_10702692 45Ga0209698_111500681 46Ga0318511_105622693 47Ga0318531_104928981 48Ga0306922_108539951 49Ga0372943_0690856_458_673
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 1Ga0137362_105867872 2JGI25615J43890_10552752 3Ga0062389_1039636971 4Ga0066690_103239701 5Ga0066388_1033520232 6Ga0066388_1036994521 7Ga0070734_103686011 8Ga0066699_112600101 9Ga0070763_103798921 10Ga0066903_1074078742 11Ga0080027_103135782 12Ga0075024_1001052751 13Ga0105059_10184251 14Ga0123355_107496872 15Ga0123355_108770001 16Ga0126384_115571961 17Ga0126382_124745622 18Ga0131853_107183861 19Ga0126376_114177272 20Ga0126377_131299912 21Ga0126379_123667241 22Ga0126383_100666564 23Ga0137391_110752161 24Ga0137363_102795033 25Ga0137399_109184001 26Ga0137362_112836331 27Ga0137395_101315831 28Ga0137407_102999061 29Ga0164301_110903321 30Ga0126369_119935071 31Ga0163163_120407871 32Ga0187807_12278281 33Ga0187785_102199181 34Ga0187785_103577362 35Ga0187776_110235461 36Ga0187781_102111932 37Ga0187771_101932921 38Ga0210393_114833472 39Ga0210394_103800531 40Ga0210384_103737922 41Ga0247664_11219941 42Ga0209106_10702692 43Ga0209698_111500681 44Ga0318511_105622693 45Ga0307472_1018994411 46Ga0306920_1017498392 47Ga0372943_0690856_458_673
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.25% β-sheet: 2.50% Coil/Unstructured: 61.25%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00015	MCPsignal	8.91
PF00581	Rhodanese	4.95
PF00210	Ferritin	2.97
PF08352	oligo_HPY	2.97
PF14229	DUF4332	2.97
PF00043	GST_C	1.98
PF02668	TauD	1.98
PF00916	Sulfate_transp	0.99
PF02776	TPP_enzyme_N	0.99
PF02803	Thiolase_C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	17.82
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	1.98
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	1.98
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.98
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.99
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.99
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.99
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.99
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.99
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.05%
Host-Associated	Host-Associated	4.95%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.91%
Arthropoda	Host-Associated → Arthropoda	2.97%
Plants	Host-Associated → Plants	1.98%
Terrestrial	Environmental → Terrestrial	86.14%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	2.97%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%
Roots	Host-Associated → Plants → Roots	0.99%
Sediment	Environmental → Aquatic → Sediment	6.93%
Soil	Environmental → Terrestrial → Soil	86.14%

Habitat	Taxonomy	Distribution
Gut	Host-Associated → Arthropoda → Digestive System → Gut	2.97%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Sand	Environmental → Terrestrial → Soil → Sand	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.98%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.99%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.94%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.96%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M

Showing 1 to 10 of 88 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_105519481	3300001661	Forest Soil	VKLIWPWQDRQRNFSWLKASAFALVLAPAVRTIYLY
JGI25615J43890_10552752	3300002910	Grasslands Soil	LQLIWPWQDRNRRFSWLKASAFALMLFPAIRTAYLVGIGDYGTAWPIALGGLTYWSGVWATIILLMALAV
Ga0062389_1039636971	3300004092	Bog Forest Soil	LHLIWPWQDRQRRFSWLKAITFALMLWPAIRTAWLIGAGGYGSTWPMALPALTYWSGVWATVIL
Ga0066690_103239701	3300005177	Soil	LRLIWPWQDRTRRFSWLKASAFALVLWPGIRFIYQFATGDYGILPIALGGMVYWS
Ga0066388_1017776872	3300005332	Tropical Forest Soil	MVWPWQDRNGRWSWLKAGTFALIVSPAVRFTYEVVTGEYGIMPIALGGMVYWSGVWATLILLLTL
Ga0066388_1033520232	3300005332	Tropical Forest Soil	MVWPWQDRSGRWSWLKAATFALIVSPAIRFTYDVVTGEYGIMPIALGGMVYWSGVWATLILLLT
Ga0066388_1036994521	3300005332	Tropical Forest Soil	MRLIWPWQDRQRQFSWLKASAFALVMLPGVRMVYQTLAGDYGMFAMALGSLVYWSGVWATVVLLMALAV
Ga0066388_1084859842	3300005332	Tropical Forest Soil	MLIWPWEDRNRRFSWLKASTLALMLLPAVRSAYLVGAGDYG
Ga0070734_103686011	3300005533	Surface Soil	VRWIWPWQDRNRRFSWLKASAFALVLLPAIRTAWLVGTGEYGTVAA
Ga0066699_112600101	3300005561	Soil	MESAVRLIWPWQDRNRRFSWLKASGFALVLAPGVRMLWQFAVGDYGILPIAYGG
Ga0066694_104662532	3300005574	Soil	LRLIWPWQDRTRRFSWLKASAFALVLWPGIRFIYQFATGDYGILP
Ga0070763_103798921	3300005610	Soil	LRLIWPWQDRNRRFSWLKASAFALVLLPAVRFVYQFETGEYGSLPMGFGSITYWSGVWATVILLM
Ga0066905_1001221191	3300005713	Tropical Forest Soil	MRLIWPWQDRQRRFSWLKASAFVLVLLPGIRLTYQTATGEFGLLSMAFGGLTYWSGVWATVV
Ga0066903_1056134512	3300005764	Tropical Forest Soil	LRLIWPWQDRNRRFSWLKASTFALMLYPAIRTACLV
Ga0066903_1074078742	3300005764	Tropical Forest Soil	VQLIWPWQDRGRRFSWLKACTFALMLLPAIRSAYLVGIGDYGVPAVVLQSLTYWSGVWATVILLMAL
Ga0080027_103135782	3300005993	Prmafrost Soil	LRLIWPWQDRDRRVSWLKASAFALVVLPAIRFIYQFAAGEYGFLPIALGNMTYWSGVWATVILLMALA
Ga0075024_1001052751	3300006047	Watersheds	LQLVWPWQDRNRRFSWLKAITFTLMLLPAIRSAYLFAIGDYGILAVALGGLTYWSGVWATVIMLMAL
Ga0075026_1003387231	3300006057	Watersheds	LQLVWPWQDRNRRFSWLKAITFTLMLLPAIRSAYLFAIGDYGILA
Ga0070765_1013892731	3300006176	Soil	LRLIWPWQDRNRRFSWLKASAFALVLLPAVRFVYQFETGEYGSLPMGFGSITYWSGVWATVIL
Ga0099793_102943803	3300007258	Vadose Zone Soil	LRLIWPWQDRSRRFSWLKAGAFALVLLPAIRFTYQVGTGEYGILPIAL
Ga0099795_100802911	3300007788	Vadose Zone Soil	LRLIWPWQDRNRRFSWLKAGAFALVLLPGIRFAYQFGTGEYGTLPIALGGMTYWSGV
Ga0116222_13049792	3300009521	Peatlands Soil	VRWIWPWQDRARRFSWLKASTFALMVLLPIRFAWQVATGDYGML
Ga0126374_116188441	3300009792	Tropical Forest Soil	MVWPWQDRSGRWSWLKAGTFALIVSPAIRFTYDVVTGEYGIMPIALGGM
Ga0105059_10184251	3300009795	Groundwater Sand	MRLIWPWQDRNRRFSWLKASVFVLILLPAIRFTYHVATGEYGIFPIALSGMVYWSGVW
Ga0123355_107496872	3300009826	Termite Gut	VRPWQDRKRRFSWLKAGALALVTVPAARTAWLAGAGDYGTVSAIVLNGLTFWSGVWATAVLL
Ga0123355_108770001	3300009826	Termite Gut	LIWPWQDRERRFSWLKAAAFAVVLLPAVRFIYQFATGDYG
Ga0126384_115571961	3300010046	Tropical Forest Soil	LQLIWPWQDRNRQFSWLKATTFALMLFPAIRTAYLVGIGDYGTTMAMALGGLTY
Ga0126382_105220331	3300010047	Tropical Forest Soil	MRLIWPWQDRQRRFSWLKASAFALVLLPGARMLYQT
Ga0126382_124745622	3300010047	Tropical Forest Soil	VQWIWPWQDRNRRFSWLKMGTLLLLLAPAIRFSYQVSAGE
Ga0131853_107183861	3300010162	Termite Gut	MRLIWPWQDRARRFSWLKATTFALMLWPAIRTAYLVSIGDYGTALPIALGGLTYWSGV
Ga0134071_107594251	3300010336	Grasslands Soil	MRLIWPWQDRQRRFSWLKASAFTLVLLPGVRMVYQTLAGDYG
Ga0074046_108653701	3300010339	Bog Forest Soil	LIDGGNDLQLIWPWQDRNRRFSWLKASTFALVLLPAIRSAYLVGAGDYGTALPVVLGGLTYWSGVWATVILLMA
Ga0126376_114177272	3300010359	Tropical Forest Soil	LRLIWPWQDRQRRFSWLKASVFALVLGPAIRFTYQVATGEYGILPIALGNMVYWSGVWATVILLMALAVTRR*
Ga0126377_131299912	3300010362	Tropical Forest Soil	VRLIWPWQDRNRRFSWLKAAIFALILLPAIRFTYQVGTGEYGILPI
Ga0126379_123667241	3300010366	Tropical Forest Soil	MESDVRLIWPWEDRNRRFSWLKASGFVLVLTPGVRMLWQFATGDYGIIPIAYGGLVYWTGVWATVVLLLALAV
Ga0126379_131657052	3300010366	Tropical Forest Soil	MRLIWPWQDRQRQFSWLKASAFALVLLPGVRMIYQTFAGDYGMLAMAL
Ga0136449_1039022331	3300010379	Peatlands Soil	VNLIWPWQDRNRRFSWLKASTFALMLLPAIRTAYL
Ga0126383_100666564	3300010398	Tropical Forest Soil	VQLFWPWQDRNRRFSRLKASTFGLMLLPAVRSAYLIGTGDYGTDLHVFWKA*
Ga0137391_110752161	3300011270	Vadose Zone Soil	LQLIWPWQDRNRRFSALKASAFALMLVPAIRIGYQLDTGEFGFYPL
Ga0137393_112515101	3300011271	Vadose Zone Soil	LRLIWPWQDRSRRFSWLKAGAFALVLLPGIRFAYQFGTGEYGTLPIALGGMTYWSG
Ga0137389_112690081	3300012096	Vadose Zone Soil	LRLIWPWQDRNRRFSWLKAGAFALVLLPAIRFAYQF
Ga0137363_102436661	3300012202	Vadose Zone Soil	LISTEGRDLRLIWPWQDRNRRFSWLKASTFALILLPAIRFTYQFGTGEYGILPIALGGMTYWSGVWATAILLMAL
Ga0137363_102795033	3300012202	Vadose Zone Soil	LRLIWPWQDRNRGFSWLKAGAFALVLLPAIRFTYQFGTGAYGILPIALGGMT
Ga0137399_109184001	3300012203	Vadose Zone Soil	MRLIWPWQDRQRRFSWLKASAFALVLLPGIRLTYQTATGEFGLLAMAFGGLTYWSGVWATVVL
Ga0137362_105867872	3300012205	Vadose Zone Soil	LRLIWPWQDRNRRFSWLKASAFALVLLPGIRFAYQFGTGEYGTLPIALGGMT
Ga0137362_112836331	3300012205	Vadose Zone Soil	VQAGRHWFDGGNDLQLIWPWQDRNRRFSWLKASTFALMLLPAIRSAYLVGTGDYGIVLPVVLGGLTYWSGVWATVIMLMALAV
Ga0137360_105512242	3300012361	Vadose Zone Soil	LRLIWPWQDRNRRFSWLKASAFALVLLPGIRFAYQFGTGEYGTLPIALGGMTYWSGVWAT
Ga0137358_107568072	3300012582	Vadose Zone Soil	MRLIWPWQDRQRRFSWLKASAFALVLLPGIRLTYQTATG
Ga0137395_101315831	3300012917	Vadose Zone Soil	VKLIWPWQDRQRNFSWLKASAFALVLAPAVRTIYLYWDGDYQSLPMGYSSLTYWSGVWATVVLL
Ga0137396_112421302	3300012918	Vadose Zone Soil	LRLIWPWQDRSRRFSWLKAGAFALVLLPAIRFTYQVG
Ga0137394_114536411	3300012922	Vadose Zone Soil	VKLIWPWQDRQRKFSWLKASAFALVLAPAVRTIYLYYAGDYQSI
Ga0137413_109579711	3300012924	Vadose Zone Soil	VRLIWPWQDRTRAFSWLKAGAFALALAPGVRMTWQLYT
Ga0137416_121934651	3300012927	Vadose Zone Soil	LQLIWPWQDRNRRFSWLKASTFALMLYPAIRSAYLFGIEDY
Ga0137407_102999061	3300012930	Vadose Zone Soil	LIWPWQDRNRKFSWLKAIAFALVVLPGARFIYQVTTGEYGILSMALGGM
Ga0164301_110903321	3300012960	Soil	MRLVWPWQDRSGAFSWLKASAFALVLAPAFRFAYQFHTNEYGMLPIAFGNMTFWSGVWATAVLL
Ga0126369_119935071	3300012971	Tropical Forest Soil	VRWVWPWQDRNRRFSWLKASAFALVLVPATRTAWLIGAGEYGTVAPIILNGLTYWSGVWA
Ga0126369_127919081	3300012971	Tropical Forest Soil	MRLIWPWQDRQRRFSWLKASAFLLVLLPGIRLTYQTAAGEFGLLAMAFGGLTYWSGV
Ga0163163_120407871	3300014325	Switchgrass Rhizosphere	VKLIWPWQDRSRRFSWLKASAFALVLAPAIRTIYLYAVGDYQTVPMGYNSLTYWSGVWATVVLL
Ga0134072_102876231	3300015357	Grasslands Soil	MGASAMRLIWPWQDRQRRFSWLKASAFALVLLPGIRMVYQTLAGDYGMFAMALGSLVYWSGVWAT
Ga0182037_106065121	3300016404	Soil	VRLIWPWEDRNRRFSWLKASGFAIVLAPGVRMLWQFA
Ga0187807_12278281	3300017926	Freshwater Sediment	LRLIWPWQDRERKFSWLKAAAFALVLLPAIRFTYQFATGDYGILPIAFGGMTY
Ga0187785_102199181	3300017947	Tropical Peatland	LRLIWPWQDRSRRFSWLKATAFTLMVLPAVRFIYQGATGDYGIPAIAIGGMTYWSGVYATAMLLA
Ga0187785_103577362	3300017947	Tropical Peatland	LPLIWPWQDRNRRFSRLKATTFALMVLPAIRFAYHAGTGEYGMFPMALGGMTYWSGVWA
Ga0187776_110235461	3300017966	Tropical Peatland	LAAGDFDRGSTVQPICPWEDRNRRFSWLKASTFALVLLPALRTAYLVGTGDYGSAVPMVLGALTYWSGVWATV
Ga0187781_102111932	3300017972	Tropical Peatland	LQFIWPWEDRNRQFSWLKASTFALMLLPAIRTAYLVAIGDY
Ga0184608_105071011	3300018028	Groundwater Sediment	MRLIWPWQDRQRRFSWLKASVFALVLLPGIRLTYQT
Ga0184619_103966642	3300018061	Groundwater Sediment	MRLIWPWQDRQRRFSWLKASAFALVMLPGIRLTYQTATGEFGLLAMAF
Ga0184625_105158462	3300018081	Groundwater Sediment	MRLIWPWQDRQRRFSWLKASAFALVMLPGIRLTYQTATGEF
Ga0187771_101932921	3300018088	Tropical Peatland	LRLIWPWQDRQRRFSPLKAGAFGLMLMPAIWLGYDLGSGEF
Ga0066662_120307441	3300018468	Grasslands Soil	LQLNWPWQDRNRRFSWLKASTFALMLLPAIRSAYL
Ga0210393_114833472	3300021401	Soil	VRWIWPWQDRNRRFSWIKASAFALVLLPAVRTAWLIWIGDYGTV
Ga0210394_103800531	3300021420	Soil	VRWIWPWQDRARRFSWLKASTFALMVLLALRFAWQVATGEYGMLPIALG
Ga0210384_103737922	3300021432	Soil	LHLIWPWQDRKRRFSWLKASTFALMFVPAVRTFYQAGTSEYGILLSLGGLTYWSGVWATALLLMA
Ga0210402_108383421	3300021478	Soil	VQWIWPWQDRSRRFSGLKAGAFALMLVPGLRLAYQ
Ga0210402_116110052	3300021478	Soil	LHLIWPWQDRKRRLSWLKASTFALMFVPAVRTFYQAGTGEY
Ga0247664_11219941	3300024232	Soil	LQWVWLWQDRKRRFSWLKASTFALMLFPALRTAYLVGAGD
Ga0209647_10958822	3300026319	Grasslands Soil	LQLIWPWQDRNRRFSWLKASAFALMLFPAIRTAYLVGIGDYGTAWPIA
Ga0257148_10219011	3300026345	Soil	LRLIWPWQDRNRRFSWLKAGAFALVLLPGIRFAYQFGTGEY
Ga0209106_10702692	3300027616	Forest Soil	VHRIWPWQDRNRRFSWLKASTFALLLLPVIRSAYLFGIDDYGVVP
Ga0209488_106997773	3300027903	Vadose Zone Soil	VQLIWPWQDRNRRLSWLKASAFALMLFPAIRTAYLVGIGDYGTALPIALGGLTYWSGVW
Ga0207428_105475711	3300027907	Populus Rhizosphere	MRLIWPWQDRQRRFSWLKASAFALVLLPGIRLTYQTATGEFGLMAMAYGGLTYWSGVWATVVLL
Ga0209698_111500681	3300027911	Watersheds	MRWVWPWQDRNGGFSWLKASAFAIVLLPAIRSAYQVGIGEYGV
Ga0209069_100333103	3300027915	Watersheds	LQLVWPWQDRNRRFSWLKAITFTLMLLPAIRSAYL
Ga0137415_105252902	3300028536	Vadose Zone Soil	LQLIWPWQDRNRRFSWLKASTFALMLFPAIRTAYLVGIGDYGTAVPIALGGLTY
Ga0307287_100307342	3300028796	Soil	MRLIWPWQDRQRRFSWLKASVFALVLLPGIRLTYQTVAGEFGLLAMAFGGLTYWSGVWAT
Ga0310039_102804672	3300030706	Peatlands Soil	VNLIWPWQDRNRRFSWLKASTFALMLLPAIRTAYLVGI
Ga0308187_100445051	3300031114	Soil	LIWPWQDRTRRFSWLKASAFALVLWPGIRFIYQFATGDYGILPIALGGMVYWSGVWA
Ga0307499_101148631	3300031184	Soil	MRLIWPWQDRQRRFSWLKASAFALVLLPGIRLIYQTAAGE
Ga0307469_106766261	3300031720	Hardwood Forest Soil	MRLIWPWQDRQRRFSWLKASAFLLVLLPGIRLTYQTAIGEYGLLAMA
Ga0318550_103145122	3300031797	Soil	LHLIWPWQDRKRRFSWLKASTFALMFVPAVRTFYQAGTGEYGISLSLGG
Ga0318511_105622693	3300031845	Soil	VRLIWPWQDRNRRFSWLKASTFALMLAPAIRTAHLVGAGEYGGDWPVVLGGLTY
Ga0306923_114978903	3300031910	Soil	VRLIWPWEDRNRRFSWLKASGFALVLAPGVRMLWQFATGDYGVL
Ga0310916_101896423	3300031942	Soil	VRLIWPWEDRNRRFSWLKASGFALVLAPGVRMLWQFAAGDYGILPIAYGGLVYWTGVWATVV
Ga0318531_104928981	3300031981	Soil	LTLIWPWQDRQRRFSALKAAAFALTLAPAAWLVYQTA
Ga0306922_108539951	3300032001	Soil	MLIWPWEDRNRRFSWLKASAFALMLLPAIRSAYLVGAGDYGSSLTVVLEGPTYWSGV
Ga0318518_104367241	3300032090	Soil	VRLIWPWEDRNRRFSWLKASGFALVLAPGVRMLWQFAAGDYGILPIAYGGLVY
Ga0307470_109021292	3300032174	Hardwood Forest Soil	MRLIWPWQDRQRRFSWLKASAFALVLLPGIRLTYQTAAGEFGLLAMAFGG
Ga0307470_114559662	3300032174	Hardwood Forest Soil	MRLIWPWQDRQRRFSWLKASAFALVLLPGIRLTYQTAAGEFGLMAMAFGGLTY
Ga0307472_1018994411	3300032205	Hardwood Forest Soil	LQLIWPWQDRNRRFSWLKAATFALMLAPAIRTAYLVGIGDYGILPIAL
Ga0306920_1017498392	3300032261	Soil	MLIWPWEDRNRRFSWLKASAFALMLLPAIRSAYLVGAGDYGSSLTVVLEGLTY
Ga0372943_0690856_458_673	3300034268	Soil	LEGGAVQLIWPWQDRQRKFSWLKAGAFALVLLPAIRFAYQFATREYGYLPIAFGNMTYWSGVWATVILLLAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103593

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences